Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 5.4e-108 394.4 212 100.0
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 9.9e-78 293.9 198 78.3
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 3.8e-77 292.0 198 77.8
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 5.4e-76 288.1 212 75.5
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 2.1e-75 286.2 198 77.3
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 7.9e-75 284.3 188 78.2
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 2.3e-74 282.7 188 77.7
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.1e-73 280.4 187 77.0
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 1.5e-73 280.0 205 74.6
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 2.5e-73 279.3 201 75.6
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 4.3e-73 278.5 190 78.9
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 5.6e-73 278.1 198 76.3
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 1.3e-72 276.9 214 72.9
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 1.6e-72 276.6 189 78.8
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 2.8e-72 275.8 197 74.1
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 4.8e-72 275.0 204 72.5
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 6.2e-72 274.6 202 76.2
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 1.8e-71 273.1 196 74.5
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 3.1e-71 272.3 186 79.0
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 5.3e-71 271.6 215 70.7
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 1.5e-70 270.0 202 75.2
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 1.5e-70 270.0 187 75.9
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 3.4e-70 268.9 211 69.7
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 4.5e-70 268.5 204 71.6
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 5.8e-70 268.1 215 71.2
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 7.6e-70 267.7 199 74.4
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 7.6e-70 267.7 209 70.8
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.0e-69 267.3 190 77.4
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 1.0e-69 267.3 189 75.7
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 1.7e-69 266.5 214 69.2
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 3.8e-69 265.4 209 69.9
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 3.8e-69 265.4 199 72.9
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 4.9e-69 265.0 198 74.2
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 8.4e-69 264.2 189 75.1
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 8.4e-69 264.2 187 75.9
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 1.1e-68 263.8 186 76.3
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 1.1e-68 263.8 209 68.9
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 1.4e-68 263.5 204 69.6
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.4e-68 263.5 204 69.6
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 1.9e-68 263.1 187 76.5
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 2.5e-68 262.7 188 75.0
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 3.2e-68 262.3 206 68.4
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 5.5e-68 261.5 189 74.6
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 7.1e-68 261.2 189 74.6
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 7.1e-68 261.2 208 68.8
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 9.3e-68 260.8 198 73.2
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 2.1e-67 259.6 210 67.6
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 4.6e-67 258.5 209 68.4
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 7.9e-67 257.7 209 68.4
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 7.9e-67 257.7 206 70.9
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 3.9e-66 255.4 186 76.9
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 6.7e-66 254.6 214 68.2
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 8.7e-66 254.2 188 70.7
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 8.7e-66 254.2 192 69.3
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 5.7e-65 251.5 215 67.4
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 1.6e-64 250.0 202 67.8
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 2.8e-64 249.2 206 67.5
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 3.7e-64 248.8 189 69.8
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 8.2e-64 247.7 187 70.1
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 8.2e-64 247.7 189 69.8
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 1.4e-63 246.9 190 67.9
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 1.4e-63 246.9 204 67.2
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 2.0e-62 243.0 203 66.5
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 2.6e-62 242.7 191 68.1
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 7.6e-62 241.1 213 63.8
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 1.0e-61 240.7 200 65.0
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 1.3e-61 240.4 192 66.7
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 1.7e-61 240.0 212 63.7
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 2.2e-61 239.6 192 66.7
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 2.2e-61 239.6 192 66.7
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 2.2e-61 239.6 192 66.7
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 2.2e-61 239.6 188 68.6
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 5.5e-60 235.0 192 66.1
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 7.2e-60 234.6 229 59.4
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 1.6e-59 233.4 205 62.4
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 2.7e-59 232.6 191 66.0
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 2.7e-59 232.6 191 66.0
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 4.6e-59 231.9 173 69.4
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 4.6e-59 231.9 173 69.4
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 6.1e-59 231.5 188 67.6
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 1.0e-58 230.7 194 64.4
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 1.0e-58 230.7 184 68.5
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 1.5e-57 226.9 217 62.7
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 4.3e-57 225.3 206 62.6
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 9.7e-57 224.2 214 61.2
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 2.2e-56 223.0 189 64.0
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 4.8e-56 221.9 191 66.0
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 6.3e-56 221.5 204 61.3
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 6.3e-56 221.5 196 65.3
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 1.1e-55 220.7 189 66.7
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.4e-55 220.3 144 79.9
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 2.4e-55 219.5 171 68.4
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 4.1e-55 218.8 144 79.2
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 9.0e-55 217.6 159 71.7
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 1.5e-54 216.9 203 63.1
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 2.6e-54 216.1 190 64.2
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 2.6e-54 216.1 198 62.6
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 3.4e-54 215.7 149 73.8
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 2.2e-53 213.0 200 60.5
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 4.2e-52 208.8 189 59.8
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 7.2e-52 208.0 144 72.9
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 7.2e-52 208.0 248 53.2
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.6e-51 206.8 169 69.2
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 1.4e-50 203.8 213 60.6
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 2.5e-49 199.5 119 83.2
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 1.7e-48 196.8 119 82.4
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.4e-47 193.7 205 58.0
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 3.1e-47 192.6 180 58.9
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 4.1e-47 192.2 173 59.5
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 4.1e-47 192.2 137 77.4
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 5.5e-44 181.8 119 75.6
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 9.4e-44 181.0 138 74.6
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 9.4e-44 181.0 116 78.4
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 1.0e-42 177.6 115 73.9
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 4.0e-34 149.1 124 67.7
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 1.3e-32 144.1 115 66.1
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 1.8e-31 140.2 102 67.6
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.2e-30 137.5 85 83.5
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 2.7e-30 136.3 85 82.4
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 2.2e-29 133.3 100 72.0
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 2.9e-29 132.9 85 81.2
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 1.9e-28 130.2 216 38.9
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 6.1e-27 125.2 201 38.8
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 3.7e-24 115.9 97 63.9
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 3.1e-23 112.8 150 49.3
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 5.4e-23 112.1 209 39.2
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 7.0e-23 111.7 69 84.1
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 4.5e-22 109.0 83 66.3
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 7.7e-22 108.2 123 51.2
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 8.5e-21 104.8 153 47.1
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 9.4e-20 101.3 80 66.2
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 6.1e-19 98.6 65 72.3
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 7.5e-17 91.7 141 38.3
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 9.8e-17 91.3 109 41.3
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.3e-16 90.9 53 81.1
Eucgr.L03507 Eucalyptus grandis HOM05D005734 ORTHO05D006990 7.0e-07 58.5 84 46.4
HanXRQChr04g0110971 Helianthus annuus HOM05D000316 ORTHO05D012803 2.0e-06 57.0 63 55.6


User provided reference genes

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