Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 2.9e-120 435.3 222 100.0
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 7.0e-82 307.8 225 71.6
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 9.1e-82 307.4 207 75.8
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 2.6e-81 305.8 208 74.5
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 1.9e-79 299.7 180 84.4
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 2.5e-79 299.3 224 71.9
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 3.2e-79 298.9 200 75.0
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 4.2e-79 298.5 194 78.9
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.2e-78 297.0 222 70.7
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 1.6e-78 296.6 220 69.1
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 3.6e-78 295.4 194 78.4
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 8.0e-78 294.3 186 78.0
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 1.0e-77 293.9 216 69.9
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 1.8e-77 293.1 216 69.4
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 6.7e-77 291.2 216 69.4
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 6.7e-77 291.2 218 71.6
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 8.8e-77 290.8 215 72.6
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 8.8e-77 290.8 186 76.9
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 1.1e-76 290.4 218 72.9
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 1.5e-76 290.0 223 66.4
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 3.3e-76 288.9 208 70.2
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 3.3e-76 288.9 170 82.4
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 3.3e-76 288.9 207 72.5
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 4.4e-76 288.5 216 69.0
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 4.4e-76 288.5 215 72.1
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 4.4e-76 288.5 210 71.9
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 9.7e-76 287.3 214 69.2
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 9.7e-76 287.3 218 69.3
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.3e-75 287.0 186 78.0
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.3e-75 287.0 186 78.0
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 1.7e-75 286.6 170 81.8
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 2.2e-75 286.2 223 66.8
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 2.2e-75 286.2 225 68.4
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 2.8e-75 285.8 185 76.2
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 2.8e-75 285.8 186 74.7
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 2.8e-75 285.8 186 74.7
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 2.8e-75 285.8 222 68.5
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.8e-75 285.8 196 75.0
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.8e-75 285.8 196 75.0
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 2.8e-75 285.8 196 75.0
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 3.7e-75 285.4 198 74.7
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 6.3e-75 284.6 186 75.8
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 6.3e-75 284.6 186 75.8
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 8.2e-75 284.3 188 76.6
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 8.2e-75 284.3 196 75.5
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 1.1e-74 283.9 204 72.5
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 1.4e-74 283.5 194 73.2
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 1.4e-74 283.5 216 69.9
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 1.4e-74 283.5 219 68.0
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 1.8e-74 283.1 234 65.4
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 2.4e-74 282.7 199 74.4
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 3.1e-74 282.3 232 65.1
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 3.1e-74 282.3 186 74.2
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 4.1e-74 282.0 206 69.4
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 4.1e-74 282.0 236 66.9
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 4.1e-74 282.0 212 68.9
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 4.1e-74 282.0 169 82.8
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 5.3e-74 281.6 165 82.4
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 5.3e-74 281.6 185 75.7
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 7.0e-74 281.2 186 73.7
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 2.0e-73 279.6 226 68.6
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 2.0e-73 279.6 226 68.6
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 2.0e-73 279.6 164 84.1
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 2.7e-73 279.3 180 75.6
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 2.7e-73 279.3 170 79.4
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 4.5e-73 278.5 162 81.5
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 4.5e-73 278.5 176 79.5
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 1.3e-72 276.9 170 80.0
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 1.7e-72 276.6 222 66.2
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 2.2e-72 276.2 242 62.4
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 5.0e-72 275.0 213 67.1
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 6.5e-72 274.6 238 63.0
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 6.5e-72 274.6 235 64.3
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 1.5e-71 273.5 233 62.7
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 1.9e-71 273.1 211 69.2
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 4.2e-71 271.9 175 74.9
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 1.2e-70 270.4 226 65.0
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 1.2e-70 270.4 195 68.2
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 1.6e-70 270.0 187 72.7
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 2.7e-70 269.2 187 73.8
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 1.4e-69 266.9 169 79.9
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 1.8e-69 266.5 176 73.3
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 3.0e-69 265.8 186 71.0
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 8.8e-69 264.2 205 67.8
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 1.2e-68 263.8 184 68.5
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 1.2e-68 263.8 196 68.9
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 1.5e-68 263.5 223 61.0
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 2.0e-68 263.1 195 72.3
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 2.6e-68 262.7 157 80.9
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 1.3e-67 260.4 198 66.2
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 2.8e-67 259.2 198 66.2
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 3.7e-67 258.8 209 67.0
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 3.7e-67 258.8 215 62.8
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 4.8e-67 258.5 169 75.1
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 6.3e-67 258.1 165 74.5
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 8.3e-67 257.7 220 61.4
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 8.3e-67 257.7 202 64.9
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.1e-66 255.8 195 67.2
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 3.1e-66 255.8 199 67.8
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 4.1e-66 255.4 177 73.4
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 4.1e-66 255.4 138 87.7
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 5.4e-66 255.0 208 62.5
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 7.0e-66 254.6 213 62.4
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 9.1e-66 254.2 146 84.2
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 1.2e-65 253.8 200 63.5
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.0e-65 253.1 195 66.2
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 2.0e-65 253.1 186 69.4
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 2.7e-65 252.7 152 78.9
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 2.7e-65 252.7 186 69.4
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 2.7e-65 252.7 186 69.4
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 4.5e-65 251.9 142 87.3
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 7.7e-65 251.1 165 77.0
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 1.0e-64 250.8 189 64.6
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 1.7e-64 250.0 239 59.4
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 2.9e-64 249.2 170 74.7
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 1.9e-63 246.5 139 84.2
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 2.5e-63 246.1 229 57.2
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 4.2e-63 245.4 227 60.4
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 5.5e-63 245.0 165 75.2
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 5.2e-61 238.4 177 65.0
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 5.7e-60 235.0 158 68.4
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 4.9e-59 231.9 158 69.0
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 8.3e-59 231.1 139 77.7
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 1.1e-58 230.7 133 85.7
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.1e-58 230.7 158 69.0
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 2.4e-58 229.6 140 80.0
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 5.4e-58 228.4 127 85.8
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 9.2e-58 227.6 127 85.0
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.7e-57 226.1 207 57.5
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 4.5e-57 225.3 132 81.8
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 4.3e-55 218.8 162 63.6
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 1.7e-51 206.8 186 59.1
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 8.3e-51 204.5 146 71.9
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 1.1e-50 204.1 154 70.1
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 1.1e-50 204.1 183 63.4
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 9.2e-50 201.1 180 66.1
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 2.3e-48 196.4 153 69.9
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 2.5e-47 193.0 141 63.8
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 3.6e-46 189.1 158 57.6
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.6e-46 189.1 160 58.1
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 4.7e-46 188.7 183 54.6
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 1.7e-43 180.3 116 74.1
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 2.9e-43 179.5 105 81.9
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 2.7e-41 172.9 97 83.5
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.6e-38 162.5 137 61.3
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.1e-37 161.0 148 52.0
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 6.8e-37 158.3 128 68.0
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.3e-35 154.1 177 55.4
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 4.6e-33 145.6 212 47.2
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 4.6e-33 145.6 216 48.1
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 7.8e-33 144.8 76 90.8
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 2.3e-32 143.3 132 50.8
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 3.9e-32 142.5 77 89.6
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 8.6e-32 141.4 105 71.4
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 5.6e-31 138.7 74 86.5
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 2.0e-28 130.2 102 64.7
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 3.2e-26 122.9 100 62.0
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 9.2e-26 121.3 126 51.6
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 1.3e-24 117.5 74 75.7
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 4.7e-22 109.0 125 52.8
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 1.2e-20 104.4 70 71.4
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 6.0e-17 92.0 46 91.3
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 1.5e-15 87.4 53 83.0
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 9.6e-15 84.7 53 73.6
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 2.1e-14 83.6 42 92.9
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 2.8e-14 83.2 42 90.5
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 5.3e-13 79.0 125 44.0
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 3.8e-11 72.8 143 43.4
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 3.2e-10 69.7 37 83.8
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 8.7e-08 61.6 33 84.8
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 1.1e-07 61.2 96 35.4
AagrBONN_evm.TU.Sc2ySwM_344.4461 Anthoceros agrestis HOM05D004281 ORTHO05D004839 1.9e-07 60.5 44 65.9
Cc05_g01010 Coffea canephora HOM05D004281 ORTHO05D004839 1.9e-07 60.5 32 90.6
Cc00_g07230 Coffea canephora HOM05D004281 ORTHO05D004839 1.6e-06 57.4 39 76.9
Cc00_g07240 Coffea canephora HOM05D004281 ORTHO05D004839 1.6e-06 57.4 39 76.9


User provided reference genes

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