Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 4.5e-115 417.9 207 100.0
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 1.3e-74 283.5 216 72.2
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 2.2e-66 256.1 191 70.2
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 5.7e-62 241.5 211 62.6
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 4.8e-61 238.4 201 61.2
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 8.2e-61 237.7 201 63.2
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 1.1e-60 237.3 214 61.2
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 1.1e-57 227.3 210 57.6
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 1.5e-57 226.9 198 57.6
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 5.5e-57 224.9 201 61.2
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 6.8e-55 218.0 217 56.7
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 1.5e-54 216.9 213 54.0
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 1.5e-54 216.9 213 54.0
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 1.5e-54 216.9 209 56.9
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 2.0e-54 216.5 199 57.8
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 2.0e-54 216.5 192 58.3
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 3.4e-54 215.7 213 53.5
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 4.4e-54 215.3 213 53.5
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 4.4e-54 215.3 213 53.5
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 9.8e-54 214.2 182 61.0
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 2.2e-53 213.0 205 56.6
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 2.8e-53 212.6 205 55.6
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 2.8e-53 212.6 219 53.9
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 8.3e-53 211.1 208 54.3
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 1.1e-52 210.7 213 53.1
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 4.1e-52 208.8 210 55.2
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 1.6e-51 206.8 201 53.7
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 1.6e-51 206.8 173 60.1
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 5.9e-51 204.9 222 50.0
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 1.0e-50 204.1 178 56.7
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.0e-50 204.1 180 60.0
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 1.0e-50 204.1 180 60.0
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 1.7e-50 203.4 180 60.6
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 3.8e-50 202.2 212 56.6
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 3.8e-50 202.2 210 54.8
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 1.1e-49 200.7 206 51.5
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 1.5e-49 200.3 208 53.4
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 1.5e-49 200.3 181 56.9
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 2.5e-49 199.5 211 52.1
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 4.2e-49 198.7 180 58.9
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 5.5e-49 198.4 200 54.0
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 9.5e-49 197.6 206 52.4
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 9.5e-49 197.6 176 57.4
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 9.5e-49 197.6 196 55.1
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 2.1e-48 196.4 213 52.1
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 4.7e-48 195.3 204 53.9
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 8.0e-48 194.5 182 54.9
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 8.0e-48 194.5 176 56.8
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 1.0e-47 194.1 186 56.5
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 1.4e-47 193.7 182 57.7
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 4.0e-47 192.2 216 50.0
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 1.2e-46 190.7 206 53.4
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 1.5e-46 190.3 187 53.5
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 1.5e-46 190.3 203 53.2
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 2.6e-46 189.5 200 48.5
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 3.4e-46 189.1 171 57.9
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 5.7e-46 188.3 207 52.2
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 7.5e-46 188.0 230 50.4
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 1.3e-45 187.2 199 50.8
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 2.2e-45 186.4 203 50.7
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 2.8e-45 186.0 196 49.0
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 2.8e-45 186.0 210 50.0
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 2.8e-45 186.0 211 50.7
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 6.3e-45 184.9 207 51.7
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 6.3e-45 184.9 172 52.9
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 8.3e-45 184.5 181 53.6
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 8.3e-45 184.5 208 51.9
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 1.4e-44 183.7 205 50.7
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 1.8e-44 183.3 210 49.5
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 2.4e-44 183.0 216 47.7
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 5.4e-44 181.8 176 54.5
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 7.0e-44 181.4 200 51.5
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 9.2e-44 181.0 225 48.9
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 2.7e-43 179.5 211 52.1
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 2.7e-43 179.5 169 57.4
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 3.5e-43 179.1 183 51.9
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 5.9e-43 178.3 186 51.1
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 1.0e-42 177.6 156 57.7
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 1.7e-42 176.8 213 47.9
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 2.3e-42 176.4 211 49.3
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 2.9e-42 176.0 173 51.4
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 2.9e-42 176.0 235 46.0
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 6.6e-42 174.9 192 49.0
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 8.6e-42 174.5 179 50.3
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 1.9e-41 173.3 223 46.2
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 3.3e-41 172.6 181 49.7
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 3.3e-41 172.6 206 50.5
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 5.6e-41 171.8 183 51.9
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 1.6e-40 170.2 223 45.7
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 4.7e-40 168.7 200 48.0
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 6.1e-40 168.3 194 51.0
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 1.0e-39 167.5 206 49.0
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 1.4e-39 167.2 212 46.7
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.3e-39 166.4 200 47.5
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 3.0e-39 166.0 180 50.0
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 5.2e-39 165.2 189 47.6
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 6.8e-39 164.9 171 51.5
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.5e-38 163.7 205 45.4
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 1.5e-38 163.7 171 50.9
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 1.5e-38 163.7 173 52.0
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 5.8e-38 161.8 137 60.6
Sabra07G0013400 Salix brachista HOM05D001544 ORTHO05D005712 9.8e-38 161.0 297 38.7
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 9.8e-38 161.0 201 44.8
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 1.7e-37 160.2 181 47.0
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 2.2e-37 159.8 183 47.5
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 4.9e-37 158.7 226 42.0
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 3.2e-36 156.0 196 45.9
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.2e-35 154.1 198 45.5
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 6.0e-35 151.8 210 45.2
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 1.7e-34 150.2 229 42.4
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 8.6e-34 147.9 312 37.2
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 8.6e-34 147.9 140 55.7
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 5.6e-33 145.2 222 39.6
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 2.1e-32 143.3 136 58.8
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 4.7e-32 142.1 174 46.6
CARHR160680 Cardamine hirsuta HOM05D001544 ORTHO05D005712 8.0e-32 141.4 185 43.2
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 1.1e-31 141.0 167 47.9
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 1.1e-31 141.0 172 44.2
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 5.2e-31 138.7 184 48.9
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 8.9e-31 137.9 167 46.7
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 3.4e-30 136.0 204 45.6
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 4.4e-30 135.6 204 45.6
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 7.5e-30 134.8 157 47.8
MBI14_g19731_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 2.2e-29 133.3 193 43.5
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 1.1e-28 131.0 117 59.0
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 3.2e-28 129.4 152 52.0
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 7.0e-28 128.3 174 45.4
Thecc.01G023500 Theobroma cacao HOM05D001544 ORTHO05D005712 9.2e-28 127.9 129 55.0
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 6.0e-27 125.2 151 45.0
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 1.3e-26 124.0 166 44.6
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 1.7e-26 123.6 141 48.9
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 8.6e-26 121.3 190 42.1
Ca_19707_v3 Cicer arietinum L. HOM05D001544 ORTHO05D005712 3.3e-25 119.4 152 44.1
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 7.3e-25 118.2 199 41.2
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 2.3e-23 113.2 175 38.3
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 3.1e-23 112.8 119 51.3
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 2.6e-22 109.8 127 51.2
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 1.3e-21 107.5 116 44.8
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 2.9e-21 106.3 93 55.9
TAR381G0232 Trochodendron aralioides HOM05D001544 ORTHO05D005712 2.9e-21 106.3 104 51.9
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 2.1e-19 100.1 193 35.2
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 5.1e-18 95.5 195 32.3
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.1e-17 94.4 195 30.3
Actinidia23006 Actinidia chinensis HOM05D001544 ORTHO05D005712 2.5e-17 93.2 58 72.4
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 3.3e-17 92.8 115 50.4
PSO675G0307 Papaver somniferum HOM05D001544 ORTHO05D005712 3.3e-17 92.8 109 44.0
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 5.6e-17 92.0 191 33.5
Zm00001eb319500 Zea mays HOM05D001544 ORTHO05D005712 7.3e-17 91.7 136 39.0
MBI14_g19737_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 8.1e-16 88.2 77 57.1
MBI14_g19736_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 1.2e-14 84.3 57 68.4
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 6.4e-13 78.6 118 36.4
CBR_g12214 Chara braunii HOM05D068249 ORTHO05D005712 7.1e-12 75.1 260 27.3
TAR626G0405 Trochodendron aralioides HOM05D000010 ORTHO05D016350 8.7e-10 68.2 42 71.4
COL.COLO4_21965 Corchorus olitorius HOM05D002906 ORTHO05D003211 5.3e-07 58.9 46 63.0
HPP92_028379 Vanilla planifolia HOM05D001544 ORTHO05D005712 9.9e-06 54.7 133 30.8


User provided reference genes

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