Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1423.7 698 100.0
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1310.8 698 90.3
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1307.4 698 89.7
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1305.8 698 89.4
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1300.4 698 88.5
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1298.5 698 88.8
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1294.6 698 89.7
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1293.5 699 88.8
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1291.6 700 89.4
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1290.4 698 87.8
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1287.7 698 88.3
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1267.7 698 86.0
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1257.7 698 86.0
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1256.9 695 86.2
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1256.1 694 86.5
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1255.7 698 86.1
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1249.6 695 85.3
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1246.5 695 84.2
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1241.9 694 85.0
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1241.9 695 85.2
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1241.9 697 84.6
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1239.9 695 84.7
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1239.6 695 84.6
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1236.1 698 84.4
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1234.6 698 84.4
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1231.9 695 85.2
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1231.1 694 85.3
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1230.7 695 85.2
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1230.3 695 85.0
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1229.9 697 83.9
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1229.9 693 85.1
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1227.2 692 85.1
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1226.8 694 84.4
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1226.5 698 84.7
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1226.1 699 83.8
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1225.3 695 84.2
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1224.5 698 83.7
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1223.8 694 84.7
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1223.4 677 85.5
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1221.8 698 82.5
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1221.5 698 84.1
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1221.1 695 84.2
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1220.3 695 83.3
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1220.3 694 83.3
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1219.5 694 83.4
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1218.4 694 84.4
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1218.0 698 84.4
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1218.0 698 83.2
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1217.6 698 83.1
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1216.8 693 84.3
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1215.7 692 83.7
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1215.3 720 82.1
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1214.9 699 83.5
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1214.9 698 82.7
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1214.1 698 83.2
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1213.0 695 83.2
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1210.7 694 83.9
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1209.1 698 83.0
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1206.0 695 82.6
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1203.3 698 82.5
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1203.0 698 82.4
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1201.8 699 82.5
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1201.4 694 82.9
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1200.7 694 81.6
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1200.7 700 81.6
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1199.1 694 81.7
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1198.7 695 81.6
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1198.7 694 81.6
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1196.0 698 82.5
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1192.9 694 80.8
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1190.3 695 80.6
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1189.1 694 83.3
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1187.2 695 81.6
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1186.0 696 82.5
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1181.0 694 80.0
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1179.5 694 79.7
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1178.3 698 81.4
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1177.2 696 80.3
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1175.2 696 80.3
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1175.2 693 81.5
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1169.8 719 78.4
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1168.3 698 81.7
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1167.5 687 79.6
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1164.8 747 76.2
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1162.9 693 81.5
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1157.9 699 81.5
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 0.0e+00 1153.3 647 83.8
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1151.0 741 76.5
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 0.0e+00 1149.4 698 81.2
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1148.7 718 77.6
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1147.1 713 76.6
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1140.9 698 77.5
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 0.0e+00 1131.3 615 87.3
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1125.9 681 80.2
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1123.2 681 79.9
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 0.0e+00 1117.4 695 79.0
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 0.0e+00 1107.4 699 76.0
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1090.5 585 88.0
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 0.0e+00 1090.1 678 76.1
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 1.1e-309 1066.2 705 74.2
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 1.9e-306 1055.4 689 73.7
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 6.2e-302 1040.4 702 71.9
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 6.4e-299 1030.4 641 78.6
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 3.3e-287 991.5 712 72.1
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 1.9e-274 949.1 540 84.1
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 7.1e-274 947.2 581 77.6
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 1.4e-253 879.8 565 76.3
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 1.6e-249 866.3 699 60.4
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 1.1e-231 807.0 697 57.0
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.5e-231 806.6 703 57.5
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.5e-231 806.6 703 57.5
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 4.4e-231 805.1 471 83.0
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 7.0e-229 797.7 704 56.8
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.1e-225 786.2 702 56.3
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 1.1e-218 763.8 711 55.6
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 1.1e-194 684.1 386 83.9
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 7.3e-162 575.1 720 43.3
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 9.9e-159 564.7 377 72.9
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 2.1e-145 520.4 506 55.9
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 1.7e-113 414.5 248 80.2
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 7.0e-112 409.1 767 36.1
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 3.7e-105 386.7 815 34.5
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 2.7e-103 380.6 344 58.1
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 3.2e-101 373.6 269 67.3
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 3.2e-80 303.9 247 62.8
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 6.6e-78 296.2 251 62.9
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 1.1e-77 295.4 179 76.0
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 1.2e-74 285.4 184 75.0
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 1.5e-74 285.0 166 80.7
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 6.8e-67 259.6 619 32.1
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 4.4e-66 256.9 235 58.3
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 3.1e-51 207.6 127 74.8
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 1.1e-48 199.1 138 76.1
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 2.1e-44 184.9 145 68.3
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 1.1e-37 162.5 95 81.1
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 1.3e-36 159.1 211 46.4
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 5.8e-34 150.2 75 93.3
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 4.9e-33 147.1 76 90.8
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 5.9e-26 123.6 84 67.9
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 6.1e-23 113.6 86 60.5
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 5.9e-18 97.1 87 58.6
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 3.0e-14 84.7 49 83.7
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 2.6e-13 81.6 49 77.6
MBI01_g27920_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D000004 5.5e-08 63.9 33 84.8


User provided reference genes

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