Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 1.8e-94 349.4 188 100.0
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 1.2e-74 283.5 192 81.2
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 2.8e-55 219.2 191 66.0
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 3.6e-55 218.8 188 68.6
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 6.8e-54 214.5 195 68.7
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 5.7e-53 211.5 188 68.1
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 7.5e-53 211.1 196 66.3
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 1.7e-52 209.9 193 66.3
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 2.2e-52 209.5 186 67.2
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 2.2e-52 209.5 186 67.2
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 2.9e-52 209.1 190 66.8
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 4.9e-52 208.4 195 65.1
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 6.4e-52 208.0 188 64.9
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.4e-51 206.1 190 65.8
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 2.4e-51 206.1 192 67.2
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 3.2e-51 205.7 189 64.6
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 9.2e-51 204.1 189 64.6
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 1.2e-50 203.8 192 64.1
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.7e-50 202.6 190 65.3
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 3.5e-50 202.2 193 63.7
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 5.9e-50 201.4 189 63.5
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 7.8e-50 201.1 190 64.7
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 1.0e-49 200.7 186 66.1
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 1.0e-49 200.7 185 64.9
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 1.3e-49 200.3 189 64.0
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 1.7e-49 199.9 195 63.6
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 2.3e-49 199.5 187 63.1
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 3.9e-49 198.7 190 63.7
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 6.6e-49 198.0 190 64.2
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 6.6e-49 198.0 190 64.2
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 8.6e-49 197.6 186 65.1
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 8.6e-49 197.6 191 64.4
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 1.1e-48 197.2 190 64.2
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 1.1e-48 197.2 190 62.6
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 1.5e-48 196.8 196 62.8
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 3.3e-48 195.7 185 61.6
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 5.6e-48 194.9 191 62.3
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 5.6e-48 194.9 193 62.7
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 7.3e-48 194.5 186 62.4
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 7.3e-48 194.5 194 62.9
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 1.2e-47 193.7 187 61.5
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 3.6e-47 192.2 195 62.1
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 4.7e-47 191.8 185 63.8
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 4.7e-47 191.8 188 62.8
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 4.7e-47 191.8 190 58.9
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 4.7e-47 191.8 188 61.7
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 6.2e-47 191.4 189 64.0
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 1.1e-46 190.7 188 60.6
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 1.1e-46 190.7 185 62.2
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 1.8e-46 189.9 191 62.3
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 1.8e-46 189.9 193 61.1
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 5.2e-46 188.3 185 62.2
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 6.8e-46 188.0 192 62.0
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 8.9e-46 187.6 190 62.6
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 1.2e-45 187.2 193 59.1
Dinv33575 Davidia involucrata HOM05D005654 ORTHO05D006438 2.0e-45 186.4 123 83.7
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 2.0e-45 186.4 190 61.6
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 7.5e-45 184.5 191 61.3
Glyma.16G220800 Glycine max HOM05D005654 ORTHO05D006438 9.8e-45 184.1 191 61.8
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 1.3e-44 183.7 184 62.5
Glyma.20G066700 Glycine max HOM05D005654 ORTHO05D006438 1.7e-44 183.3 189 63.0
Sc18g0007030 Simmondsia chinensis HOM05D005654 ORTHO05D006438 2.9e-44 182.6 199 59.8
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 3.7e-44 182.2 188 62.2
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 4.9e-44 181.8 192 56.8
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 1.1e-43 180.6 185 56.8
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 1.1e-43 180.6 185 56.8
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 1.1e-43 180.6 185 56.8
Hund00373 Selenicereus undatus HOM05D005654 ORTHO05D006438 1.1e-43 180.6 197 58.9
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 3.2e-43 179.1 185 56.2
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 4.1e-43 178.7 185 57.8
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 4.1e-43 178.7 185 59.5
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 5.4e-43 178.3 192 55.7
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 5.4e-43 178.3 191 56.5
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 9.2e-43 177.6 241 50.6
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 1.6e-42 176.8 185 56.2
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 2.0e-42 176.4 185 57.3
ECA248G0981 Erigeron canadensis HOM05D005654 ORTHO05D006438 2.0e-42 176.4 193 59.1
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 2.7e-42 176.0 191 55.5
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 3.5e-42 175.6 192 56.2
Medtr8g077440 Medicago truncatula HOM05D005654 ORTHO05D006438 7.8e-42 174.5 194 58.8
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 3.0e-41 172.6 193 57.0
TPR.G24134 Trifolium pratense HOM05D005654 ORTHO05D006438 6.6e-41 171.4 188 58.5
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 8.6e-41 171.0 190 55.8
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 1.5e-40 170.2 211 54.5
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 4.3e-40 168.7 191 53.9
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 4.3e-40 168.7 185 57.3
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 4.3e-40 168.7 185 56.8
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 5.6e-40 168.3 189 53.4
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 7.3e-40 167.9 185 55.7
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 7.3e-40 167.9 185 55.7
Oeu035320.1 Olea europaea HOM05D005654 ORTHO05D006438 1.6e-39 166.8 130 72.3
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 2.1e-39 166.4 185 55.1
HanXRQChr10g0278901 Helianthus annuus HOM05D005654 ORTHO05D006438 1.1e-38 164.1 193 53.4
Aqoxy6G01210 Aquilegia oxysepala HOM05D005654 ORTHO05D006438 3.1e-38 162.5 188 54.8
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 8.9e-38 161.0 203 55.2
AUR62027117 Chenopodium quinoa HOM05D005654 ORTHO05D006438 2.6e-37 159.5 193 54.9
SGA_v2.0_scaffold9G04932 Striga asiatica HOM05D005654 ORTHO05D006438 5.8e-37 158.3 123 70.7
AUR62012893 Chenopodium quinoa HOM05D005654 ORTHO05D006438 1.7e-36 156.8 194 54.1
Potri.007G018300 Populus trichocarpa HOM05D005654 ORTHO05D006438 2.2e-36 156.4 135 63.0
arahy.Tifrunner.gnm1.ann1.I9PPQ0 Arachis hypogaea HOM05D005654 ORTHO05D006438 4.1e-35 152.1 199 52.3
CDE04G0601 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 1.6e-34 150.2 196 50.5
CDE12G0226 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 2.1e-34 149.8 197 50.8
Ciclev10003765m.g Citrus clementina HOM05D005654 ORTHO05D006438 3.5e-34 149.1 135 63.0
Sed0001903 Sechium edule HOM05D005654 ORTHO05D006438 1.6e-31 140.2 95 83.2
EL10Ac9g22080 Beta vulgaris HOM05D005654 ORTHO05D006438 3.6e-31 139.0 258 43.8
HPP92_013005 Vanilla planifolia HOM05D005654 ORTHO05D006438 3.6e-31 139.0 182 48.4
ATR0605G129 Amborella trichopoda HOM05D005654 ORTHO05D006438 2.4e-30 136.3 189 50.3
Ah.08g209860 Amaranthus hybridus HOM05D005654 ORTHO05D006438 1.2e-29 134.0 142 55.6
FAN20G0529 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.0e-29 133.3 126 65.9
SGA_v2.0_scaffold280G46859 Striga asiatica HOM05D005654 ORTHO05D006438 4.9e-28 128.6 132 54.5
Cfa006918 Carpinus fangiana HOM05D005654 ORTHO05D006438 6.4e-28 128.3 208 44.7
DCAR_025978 Daucus carota HOM05D005654 ORTHO05D006438 3.2e-27 125.9 189 50.3
Nn5g29728 Nelumbo nucifera HOM05D005654 ORTHO05D006438 5.4e-27 125.2 140 52.9
TWI09G1445 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 1.2e-26 124.0 135 61.5
Zm00001eb265250 Zea mays HOM05D005654 ORTHO05D006438 1.2e-26 124.0 124 62.1
Os05g0126200 Oryza sativa ssp. japonica HOM05D005654 ORTHO05D006438 1.7e-25 120.2 201 46.3
Cpa.g.sc217.22 Carica papaya HOM05D005654 ORTHO05D006438 3.9e-25 119.0 167 47.9
Psat2g190960 Pisum sativum HOM05D005654 ORTHO05D006438 6.6e-25 118.2 131 55.0
Psat0s439g0080 Pisum sativum HOM05D005654 ORTHO05D006438 1.9e-24 116.7 129 53.5
CARHR160580 Cardamine hirsuta HOM05D005654 ORTHO05D006438 2.5e-24 116.3 93 72.0
FAN24G1434 Fragaria x ananassa HOM05D005654 ORTHO05D006438 4.3e-24 115.5 167 45.5
Rhsim08G0123600 Rhododendron simsii HOM05D005654 ORTHO05D006438 7.3e-24 114.8 189 48.1
Zm00001eb414250 Zea mays HOM05D005654 ORTHO05D006438 2.7e-18 96.3 96 62.5
unitig_747.g21954 Utricularia gibba HOM05D005654 ORTHO05D006438 5.1e-17 92.0 115 47.0
SEGI_21166 Sequoiadendron giganteum HOM05D005654 ORTHO05D006438 3.4e-13 79.3 112 42.9
SHI03481 Sapria himalayana HOM05D005654 ORTHO05D006438 5.8e-13 78.6 109 46.8
Zm00001eb355020 Zea mays HOM05D005654 ORTHO05D006438 5.8e-13 78.6 126 48.4
MBI01_g11791_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 7.6e-13 78.2 143 42.7
FAN15G1271 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.3e-12 77.4 64 75.0
Zm00001eb035810 Zea mays HOM05D005654 ORTHO05D006438 2.4e-11 73.2 81 59.3
Zm00001eb078300 Zea mays HOM05D000349 ORTHO05D010734 1.3e-09 67.4 81 54.3
Zm00001eb309330 Zea mays HOM05D000349 ORTHO05D006438 1.3e-09 67.4 81 54.3
Lalb_Chr02g0154671 Lupinus albus HOM05D005654 ORTHO05D006438 1.9e-08 63.5 79 44.3
CARHR160590 Cardamine hirsuta HOM05D005654 ORTHO05D006438 7.4e-08 61.6 100 38.0
SHI05467 Sapria himalayana HOM05D005654 ORTHO05D006438 1.3e-07 60.8 67 52.2
Mapoly0001s0539 Marchantia polymorpha HOM05D024399 ORTHO05D023494 3.7e-07 59.3 87 46.0
Zm00001eb093520 Zea mays HOM05D005654 ORTHO05D006438 4.8e-07 58.9 62 56.5
SHI06070 Sapria himalayana HOM05D005654 ORTHO05D006438 6.2e-07 58.5 92 42.4
SHI15307 Sapria himalayana HOM05D005654 ORTHO05D006438 8.1e-07 58.2 128 39.1
FAN24G2610 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.1e-06 56.2 43 79.1


User provided reference genes

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