Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G098000 Manihot esculenta HOM05D006531 ORTHO05D007905 7.0e-245 850.1 413 100.0
Potri.007G019733 Populus trichocarpa HOM05D006531 ORTHO05D007905 5.9e-143 511.5 415 61.7
Potri.007G019800 Populus trichocarpa HOM05D006531 ORTHO05D007905 1.3e-142 510.4 415 61.4
Sabra07G0016900 Salix brachista HOM05D006531 ORTHO05D007905 2.0e-119 433.3 365 59.5
Gohir.A11G181766 Gossypium hirsutum HOM05D006531 ORTHO05D007905 1.9e-117 426.8 415 53.5
Gohir.D11G188400 Gossypium hirsutum HOM05D006531 ORTHO05D007905 2.5e-117 426.4 415 53.5
Thecc.01G028000 Theobroma cacao HOM05D006531 ORTHO05D007905 2.5e-117 426.4 415 53.7
Atru.chr3.665 Acer truncatum HOM05D006531 ORTHO05D007905 1.2e-116 424.1 419 53.7
Gorai.007G200500 Gossypium raimondii HOM05D006531 ORTHO05D007905 4.7e-116 422.2 415 53.0
CiPaw.07G051400 Carya illinoinensis HOM05D006531 ORTHO05D007905 1.4e-115 420.6 418 52.4
Duzib187G1823 Durio zibethinus HOM05D006531 ORTHO05D007905 4.4e-114 415.6 411 53.3
Haze_03846 Corylus avellana HOM05D006531 ORTHO05D007905 1.4e-112 410.6 417 51.6
COL.COLO4_22012 Corchorus olitorius HOM05D006531 ORTHO05D007905 1.3e-110 404.1 413 52.1
Ciclev10025250m.g Citrus clementina HOM05D006531 ORTHO05D007905 8.6e-110 401.4 420 52.6
QL06p035210 Quercus lobata HOM05D006531 ORTHO05D007905 1.5e-109 400.6 441 48.3
TAR628G0973 Trochodendron aralioides HOM05D006531 ORTHO05D007905 7.3e-109 398.3 426 49.1
GSVIVG01018883001 Vitis vinifera HOM05D006531 ORTHO05D007905 1.2e-108 397.5 413 50.6
MD15G1254500 Malus domestica HOM05D006531 ORTHO05D007905 2.8e-108 396.4 415 49.2
Dinv05610 Davidia involucrata HOM05D006531 ORTHO05D007905 4.7e-108 395.6 395 51.1
Cpa.g.sc89.75 Carica papaya HOM05D006531 ORTHO05D007905 8.1e-108 394.8 420 49.0
Gohir.D11G322533 Gossypium hirsutum HOM05D006531 ORTHO05D007905 9.8e-106 387.9 415 50.6
Actinidia35619 Actinidia chinensis HOM05D006531 ORTHO05D007905 2.2e-105 386.7 416 49.3
Lalb_Chr16g0391021 Lupinus albus HOM05D006531 ORTHO05D007905 4.9e-105 385.6 416 47.4
TWI53G1729 Tripterygium wilfordii HOM05D006531 ORTHO05D007905 4.1e-104 382.5 416 50.0
Prupe.7G159100 Prunus persica HOM05D006531 ORTHO05D007905 7.1e-104 381.7 362 52.8
CANSAT21G1927 Cannabis sativa HOM05D006531 ORTHO05D007905 8.6e-102 374.8 408 47.3
Lj2C458T7 Lonicera japonica HOM05D006531 ORTHO05D007905 8.6e-102 374.8 416 47.8
RcHm_v2.0_Chr2g0100811 Rosa chinensis HOM05D006531 ORTHO05D007905 3.3e-101 372.9 408 47.5
Medtr8g076860 Medicago truncatula HOM05D006531 ORTHO05D007905 4.7e-100 369.0 420 48.8
FvH4_1g12740 Fragaria vesca HOM05D006531 ORTHO05D007905 1.1e-99 367.9 412 46.8
FAN19G3073 Fragaria x ananassa HOM05D006531 ORTHO05D007905 1.1e-99 367.9 412 46.8
Atru.BG.101.p Acer truncatum HOM05D006531 ORTHO05D007905 1.8e-99 367.1 414 48.1
Sed0004808 Sechium edule HOM05D006531 ORTHO05D007905 2.3e-99 366.7 413 47.2
arahy.Tifrunner.gnm1.ann1.WDDE23 Arachis hypogaea HOM05D006531 ORTHO05D007905 1.5e-98 364.0 419 47.3
arahy.Tifrunner.gnm1.ann1.P54VLQ Arachis hypogaea HOM05D006531 ORTHO05D007905 1.7e-97 360.5 419 46.8
FAN23G2909 Fragaria x ananassa HOM05D006531 ORTHO05D007905 2.9e-97 359.8 412 45.9
Ca_22340_v3 Cicer arietinum L. HOM05D006531 ORTHO05D007905 8.4e-97 358.2 413 46.0
vmacro17801 Vaccinium macrocarpon HOM05D006531 ORTHO05D007905 2.4e-96 356.7 403 46.9
CsaV3_6G046680 Cucumis sativus L. HOM05D006531 ORTHO05D007905 5.4e-96 355.5 418 45.7
FAN28G0612 Fragaria x ananassa HOM05D006531 ORTHO05D007905 5.4e-96 355.5 413 45.0
Psat4g096120 Pisum sativum HOM05D006531 ORTHO05D007905 7.1e-96 355.1 432 45.8
Eucgr.J02379 Eucalyptus grandis HOM05D006531 ORTHO05D007905 1.6e-95 354.0 414 44.9
MELO3C007866.2 Cucumis melo HOM05D006531 ORTHO05D007905 2.1e-95 353.6 413 45.5
FAN26G0669 Fragaria x ananassa HOM05D006531 ORTHO05D007905 2.1e-95 353.6 413 45.0
Glyma.02G053000 Glycine max HOM05D006531 ORTHO05D007905 2.1e-95 353.6 416 45.4
MBI16_g36847_MAGBIO Magnolia biondii HOM05D006531 ORTHO05D007905 3.9e-94 349.4 446 44.2
TPR.G21544 Trifolium pratense HOM05D006531 ORTHO05D007905 5.1e-94 349.0 416 46.2
Cc07_g10020 Coffea canephora HOM05D006531 ORTHO05D007905 6.6e-94 348.6 420 45.0
Rhsim08G0121800 Rhododendron simsii HOM05D006531 ORTHO05D007905 1.1e-93 347.8 414 44.2
ClCG01G019940 Citrullus lanatus HOM05D006531 ORTHO05D008656 4.3e-93 345.9 449 42.5
VMungo0251G0240 Vigna mungo HOM05D006531 ORTHO05D007905 2.8e-92 343.2 417 44.4
MSTRG.23258 Avicennia marina HOM05D006531 ORTHO05D007905 3.1e-91 339.7 424 44.6
Lj4g0004916 Lotus japonicus HOM05D006531 ORTHO05D007905 5.2e-91 339.0 418 45.0
PGR102G2490 Punica granatum HOM05D006531 ORTHO05D007905 1.5e-90 337.4 425 44.0
DCAR_001553 Daucus carota HOM05D006531 ORTHO05D007905 5.8e-90 335.5 420 44.5
Aqoxy6G01185 Aquilegia oxysepala HOM05D006531 ORTHO05D007905 4.2e-88 329.3 441 42.2
PSO675G3692 Papaver somniferum HOM05D006531 ORTHO05D007905 1.2e-87 327.8 424 43.2
Oeu056763.1 Olea europaea HOM05D006531 ORTHO05D007905 1.6e-87 327.4 416 44.5
SGA_v2.0_scaffold12G06335 Striga asiatica HOM05D006531 ORTHO05D007905 2.1e-87 327.0 414 43.7
Hma1.2p1_3019F.1_g331750 Hydrangea macrophylla HOM05D006531 ORTHO05D007905 3.9e-86 322.8 369 48.8
SalBow8G4669 Salvia bowleyana HOM05D006531 ORTHO05D007905 1.9e-85 320.5 418 43.1
Lsat_1_v5_gn_4_151921 Lactuca sativa HOM05D006531 ORTHO05D007905 3.3e-85 319.7 413 43.3
AUR62004101 Chenopodium quinoa HOM05D006531 ORTHO05D007905 4.3e-85 319.3 414 42.3
Sc07g0000880 Simmondsia chinensis HOM05D006531 ORTHO05D007905 9.6e-85 318.2 413 43.3
PSO541G5850 Papaver somniferum HOM05D006531 ORTHO05D007905 2.1e-84 317.0 430 41.6
Migut.H02514 Erythranthe guttata HOM05D006531 ORTHO05D007905 3.6e-84 316.2 421 41.3
AUR62007614 Chenopodium quinoa HOM05D006531 ORTHO05D007905 1.4e-83 314.3 414 41.5
CAN.G753.1 Capsicum annuum HOM05D006531 ORTHO05D007905 3.1e-83 313.2 416 40.9
PGSC0003DMG400022568 Solanum tuberosum HOM05D006531 ORTHO05D007905 1.2e-82 311.2 416 40.9
EL10As8g23896 Beta vulgaris HOM05D006531 ORTHO05D007905 1.5e-82 310.8 413 41.4
Hund14004 Selenicereus undatus HOM05D006531 ORTHO05D007905 3.4e-82 309.7 413 42.4
ECA232G0312 Erigeron canadensis HOM05D006531 ORTHO05D007905 1.7e-81 307.4 415 41.9
Ah.03g141200 Amaranthus hybridus HOM05D006531 ORTHO05D007905 1.9e-80 303.9 403 41.7
Solyc03g033720.4 Solanum lycopersicum HOM05D006531 ORTHO05D007905 1.0e-78 298.1 423 39.5
Sopen03g006510 Solanum pennellii HOM05D006531 ORTHO05D007905 1.7e-78 297.4 423 38.5
Nitab4.5_0011360g0010 Nicotiana tabacum HOM05D006531 ORTHO05D007905 1.1e-75 288.1 417 39.6
Thhalv10003992m.g Eutrema salsugineum HOM05D006531 ORTHO05D007905 2.6e-74 283.5 410 40.2
THA.LOC104819768 Tarenaya hassleriana HOM05D006531 ORTHO05D007905 2.9e-73 280.0 415 38.3
Nitab4.5_0001289g0010 Nicotiana tabacum HOM05D006531 ORTHO05D007905 3.2e-72 276.6 444 36.5
unitig_0.g471 Utricularia gibba HOM05D006531 ORTHO05D007905 7.1e-72 275.4 413 39.5
AT3G26750 Arabidopsis thaliana HOM05D006531 ORTHO05D007905 9.3e-72 275.0 410 38.8
Carub.0005s0479 Capsella rubella HOM05D006531 ORTHO05D007905 2.1e-71 273.9 412 39.3
CDE04G2389 Ceratophyllum demersum HOM05D006531 ORTHO05D007905 2.1e-71 273.9 424 37.7
CARHR147820 Cardamine hirsuta HOM05D006531 ORTHO05D007905 3.5e-71 273.1 416 38.9
AL5G15610 Arabidopsis lyrata HOM05D006531 ORTHO05D007905 4.6e-71 272.7 419 38.4
BcaC06g31044 Brassica carinata HOM05D006531 ORTHO05D007905 6.7e-70 268.9 412 39.3
A06p41760 Brassica napus HOM05D006531 ORTHO05D007905 3.3e-69 266.5 412 37.9
BraA06t27096Z Brassica rapa HOM05D006531 ORTHO05D007905 3.3e-69 266.5 412 37.9
Sp2g15880 Schrenkiella parvula HOM05D006531 ORTHO05D007905 4.3e-69 266.2 410 38.3
BcaC06g33892 Brassica carinata HOM05D006531 ORTHO05D007905 2.1e-68 263.8 407 38.6
C07p35780 Brassica napus HOM05D006531 ORTHO05D007905 2.1e-68 263.8 407 38.6
BolC7t44097H Brassica oleracea HOM05D006531 ORTHO05D007905 2.1e-68 263.8 407 38.6
HanXRQChr09g0261281 Helianthus annuus HOM05D006531 ORTHO05D007905 8.1e-68 261.9 414 37.4
Phvul.003G257232 Phaseolus vulgaris HOM05D006531 ORTHO05D007905 4.5e-66 256.1 221 53.4
ATR0585G072 Amborella trichopoda HOM05D006531 ORTHO05D007905 5.8e-66 255.8 414 33.3
Aa31LG2G5790 Aethionema arabicum HOM05D006531 ORTHO05D007905 9.3e-64 248.4 399 37.1
Peaxi162Scf00010g00816 Petunia axillaris HOM05D006531 ORTHO05D007905 2.1e-63 247.3 406 35.7
HPP92_011628 Vanilla planifolia HOM05D006531 ORTHO05D007905 8.7e-62 241.9 424 36.8
Os02g0130900 Oryza sativa ssp. japonica HOM05D006531 ORTHO05D007905 4.1e-59 233.0 440 33.0
MBI14_g29302_MAGBIO Magnolia biondii HOM05D006531 ORTHO05D007905 4.2e-56 223.0 189 54.5
Mapoly0011s0081 Marchantia polymorpha HOM05D006531 ORTHO05D007905 5.0e-41 172.9 479 28.2
CSS0007477 Camellia sinensis var. sinensis HOM05D006531 ORTHO05D007905 5.5e-40 169.5 134 58.2
TAR376G0004 Trochodendron aralioides HOM05D006531 ORTHO05D007905 1.6e-39 167.9 143 57.3
Pp3c2_6980 Physcomitrium patens HOM05D006531 ORTHO05D007905 2.8e-36 157.1 448 27.0
vmacro23089 Vaccinium macrocarpon HOM05D006531 ORTHO05D007905 2.8e-36 157.1 167 47.9
Nn5g29702 Nelumbo nucifera HOM05D006531 ORTHO05D007905 4.8e-36 156.4 141 52.5
Zm00001eb231290 Zea mays HOM05D006531 ORTHO05D007905 8.5e-33 145.6 190 41.1
Carub.0006s2991 Capsella rubella HOM05D006531 ORTHO05D007905 5.3e-27 126.3 103 57.3
AagrBONN_evm.TU.Sc2ySwM_368.1148 Anthoceros agrestis HOM05D006531 ORTHO05D007905 5.9e-26 122.9 418 24.4
Zm00001eb209020 Zea mays HOM05D006531 ORTHO05D007905 2.5e-24 117.5 359 26.2
Phvul.003G257166 Phaseolus vulgaris HOM05D006531 ORTHO05D007905 8.0e-23 112.5 93 57.0
SEGI_05601 Sequoiadendron giganteum HOM05D006531 ORTHO05D007905 1.8e-19 101.3 319 26.6
Sc07g0000850 Simmondsia chinensis HOM05D006531 ORTHO05D007905 1.5e-13 81.6 74 52.7
RcHm_v2.0_Chr4g0390451 Rosa chinensis HOM05D006531 ORTHO05D007905 1.0e-09 68.9 43 74.4
TAR629G1149 Trochodendron aralioides HOM05D006531 ORTHO05D007905 2.3e-09 67.8 101 39.6
MSTRG.2488 Avicennia marina HOM05D006531 ORTHO05D007905 5.0e-09 66.6 77 44.2


User provided reference genes

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