Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 8.7e-93 343.6 169 100.0
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 5.0e-32 141.7 135 64.4
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 8.9e-21 104.4 127 52.0
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 8.9e-21 104.4 136 50.7
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 1.7e-19 100.1 129 50.4
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 2.2e-19 99.8 122 50.0
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 8.3e-19 97.8 122 47.5
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.4e-18 97.1 130 50.0
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.4e-18 96.3 128 48.4
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 3.2e-18 95.9 122 47.5
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 4.1e-18 95.5 159 40.3
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 4.1e-18 95.5 131 50.4
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 9.2e-18 94.4 122 46.7
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.6e-17 93.6 134 46.3
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.6e-17 93.6 134 46.3
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 2.1e-17 93.2 134 42.5
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 2.1e-17 93.2 122 45.9
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 2.1e-17 93.2 122 45.9
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 2.1e-17 93.2 122 45.9
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 2.1e-17 93.2 122 45.9
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 3.5e-17 92.4 122 46.7
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 3.5e-17 92.4 122 46.7
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 3.5e-17 92.4 121 49.6
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 4.6e-17 92.0 122 46.7
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 4.6e-17 92.0 122 46.7
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 4.6e-17 92.0 122 46.7
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 4.6e-17 92.0 122 46.7
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 4.6e-17 92.0 128 48.4
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 7.8e-17 91.3 123 47.2
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 7.8e-17 91.3 137 46.7
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 7.8e-17 91.3 121 48.8
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 1.0e-16 90.9 123 49.6
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 1.3e-16 90.5 125 47.2
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.7e-16 90.1 122 45.1
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.7e-16 90.1 122 45.1
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.3e-16 89.7 122 45.1
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 2.3e-16 89.7 123 44.7
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 2.3e-16 89.7 123 46.3
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 2.3e-16 89.7 123 46.3
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 2.3e-16 89.7 120 48.3
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 3.0e-16 89.4 123 46.3
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 3.0e-16 89.4 122 45.1
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 3.0e-16 89.4 127 49.6
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 3.9e-16 89.0 122 52.5
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 3.9e-16 89.0 123 44.7
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 5.1e-16 88.6 123 45.5
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 5.1e-16 88.6 123 45.5
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 5.1e-16 88.6 123 45.5
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 5.1e-16 88.6 123 45.5
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 5.1e-16 88.6 133 48.1
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 6.6e-16 88.2 120 50.0
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 8.6e-16 87.8 123 45.5
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 8.6e-16 87.8 123 45.5
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 1.1e-15 87.4 123 45.5
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 1.1e-15 87.4 131 42.7
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 1.1e-15 87.4 125 52.0
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.1e-15 87.4 127 47.2
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 1.9e-15 86.7 122 47.5
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.9e-15 86.7 123 44.7
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.9e-15 86.7 125 48.8
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 3.3e-15 85.9 140 44.3
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 3.3e-15 85.9 120 47.5
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 5.6e-15 85.1 120 46.7
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 5.6e-15 85.1 124 43.5
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 5.6e-15 85.1 126 46.8
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 9.5e-15 84.3 123 45.5
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.6e-14 83.6 125 48.0
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 2.1e-14 83.2 113 46.9
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 2.1e-14 83.2 108 52.8
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.8e-14 82.8 128 44.5
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 2.8e-14 82.8 108 51.9
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 4.7e-14 82.0 128 44.5
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 4.7e-14 82.0 138 39.9
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 6.2e-14 81.6 131 45.0
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 6.2e-14 81.6 129 43.4
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 6.2e-14 81.6 137 40.9
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 8.1e-14 81.3 121 46.3
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 8.1e-14 81.3 123 47.2
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 1.4e-13 80.5 127 42.5
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 1.8e-13 80.1 130 42.3
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.8e-13 80.1 121 44.6
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 1.8e-13 80.1 128 41.4
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 1.8e-13 80.1 124 45.2
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 2.3e-13 79.7 131 45.0
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 3.1e-13 79.3 131 44.3
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 3.1e-13 79.3 121 43.8
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 4.0e-13 79.0 125 45.6
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 4.0e-13 79.0 119 45.4
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 4.0e-13 79.0 125 44.0
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 4.0e-13 79.0 118 44.9
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 4.0e-13 79.0 121 43.0
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 5.2e-13 78.6 123 49.6
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 6.8e-13 78.2 138 39.9
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 6.8e-13 78.2 127 41.7
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 1.5e-12 77.0 123 43.9
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 1.5e-12 77.0 137 38.7
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 2.0e-12 76.6 96 45.8
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.6e-12 76.3 125 43.2
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 5.8e-12 75.1 120 45.0
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 7.5e-12 74.7 127 39.4
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 7.5e-12 74.7 130 40.0
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 9.9e-12 74.3 123 43.1
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 9.9e-12 74.3 116 42.2
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 1.3e-11 73.9 127 45.7
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 1.3e-11 73.9 49 71.4
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.7e-11 73.6 128 42.2
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 1.7e-11 73.6 117 42.7
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 2.2e-11 73.2 111 42.3
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 2.2e-11 73.2 128 42.2
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 2.9e-11 72.8 128 39.8
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 2.9e-11 72.8 133 38.3
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 2.9e-11 72.8 128 39.8
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 2.9e-11 72.8 133 38.3
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 2.9e-11 72.8 128 39.8
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 3.7e-11 72.4 127 39.4
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 3.7e-11 72.4 130 38.5
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 4.9e-11 72.0 114 43.0
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 6.4e-11 71.6 120 41.7
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 6.4e-11 71.6 115 41.7
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 6.4e-11 71.6 128 41.4
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 6.4e-11 71.6 124 39.5
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.1e-10 70.9 126 39.7
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 1.1e-10 70.9 137 36.5
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 1.1e-10 70.9 130 40.8
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 1.1e-10 70.9 122 42.6
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.4e-10 70.5 130 39.2
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 1.4e-10 70.5 136 35.3
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 1.9e-10 70.1 133 40.6
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 1.9e-10 70.1 109 46.8
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 2.4e-10 69.7 115 50.4
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 3.2e-10 69.3 126 40.5
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 3.2e-10 69.3 123 43.9
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 4.1e-10 68.9 130 38.5
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 4.1e-10 68.9 126 40.5
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 4.1e-10 68.9 129 38.8
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 4.1e-10 68.9 49 67.3
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 4.1e-10 68.9 120 42.5
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 5.4e-10 68.6 130 40.8
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 7.1e-10 68.2 130 39.2
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 1.6e-09 67.0 130 36.9
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 1.6e-09 67.0 112 44.6
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 2.1e-09 66.6 132 38.6
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 3.5e-09 65.9 127 40.9
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 3.5e-09 65.9 110 43.6
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 6.0e-09 65.1 122 38.5
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 6.0e-09 65.1 122 38.5
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 6.0e-09 65.1 117 40.2
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 7.8e-09 64.7 111 42.3
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 7.8e-09 64.7 112 40.2
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 1.0e-08 64.3 126 35.7
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 1.0e-08 64.3 126 35.7
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.3e-08 63.9 114 40.4
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 1.3e-08 63.9 108 41.7
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 1.7e-08 63.5 107 43.9
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 3.0e-08 62.8 105 40.0
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 3.0e-08 62.8 124 37.9
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 3.9e-08 62.4 113 41.6
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 3.9e-08 62.4 109 40.4
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 3.9e-08 62.4 120 39.2
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 8.6e-08 61.2 118 36.4
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.1e-07 60.8 89 42.7
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 1.9e-07 60.1 149 30.9
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.9e-07 60.1 114 37.7
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 2.5e-07 59.7 107 47.7
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 5.6e-07 58.5 37 62.2
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 5.6e-07 58.5 109 39.4
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 7.3e-07 58.2 36 63.9
HPP92_023423 Vanilla planifolia HOM05D003805 ORTHO05D004300 7.3e-07 58.2 48 56.2
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 1.2e-06 57.4 108 41.7
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 2.1e-06 56.6 47 57.4
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 2.8e-06 56.2 110 38.2
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 3.6e-06 55.8 114 40.4


User provided reference genes

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