Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G095200 Manihot esculenta HOM05D005644 ORTHO05D007092 9.9e-109 396.7 193 100.0
TWI73G0320 Tripterygium wilfordii HOM05D005644 ORTHO05D007092 3.6e-103 378.3 193 93.3
Potri.005G121700 Populus trichocarpa HOM05D005644 ORTHO05D007092 6.2e-103 377.5 193 93.3
Gohir.D03G013600 Gossypium hirsutum HOM05D005644 ORTHO05D007092 1.4e-102 376.3 193 94.3
Gorai.003G013900 Gossypium raimondii HOM05D005644 ORTHO05D007092 1.4e-102 376.3 193 94.3
Gohir.A02G166400 Gossypium hirsutum HOM05D005644 ORTHO05D007092 6.9e-102 374.0 193 93.3
Manes.01G136400 Manihot esculenta HOM05D005644 ORTHO05D007092 5.8e-101 370.9 193 93.8
Thecc.01G033400 Theobroma cacao HOM05D005644 ORTHO05D007092 5.8e-101 370.9 193 93.3
Duzib264G1010 Durio zibethinus HOM05D005644 ORTHO05D007092 7.6e-101 370.5 193 92.7
Potri.007G023500 Populus trichocarpa HOM05D005644 ORTHO05D007092 9.9e-101 370.2 193 92.2
Lalb_Chr09g0333481 Lupinus albus HOM05D005644 ORTHO05D007092 1.7e-100 369.4 193 91.2
CiPaw.02G018800 Carya illinoinensis HOM05D005644 ORTHO05D007092 6.4e-100 367.5 193 91.2
arahy.Tifrunner.gnm1.ann1.59MT2Q Arachis hypogaea HOM05D005644 ORTHO05D007092 8.4e-100 367.1 193 90.2
QL06p046522 Quercus lobata HOM05D005644 ORTHO05D007092 8.4e-100 367.1 192 91.1
Prupe.7G156300 Prunus persica HOM05D005644 ORTHO05D007092 1.1e-99 366.7 193 91.7
Ciclev10022394m.g Citrus clementina HOM05D005644 ORTHO05D007092 1.9e-99 365.9 193 89.6
Glyma.16G138200 Glycine max HOM05D005644 ORTHO05D007092 1.9e-99 365.9 193 90.2
Phvul.003G254800 Phaseolus vulgaris HOM05D005644 ORTHO05D007092 1.9e-99 365.9 193 89.6
MELO3C026580.2 Cucumis melo HOM05D005644 ORTHO05D007092 3.2e-99 365.2 193 89.6
TAR101G0001 Trochodendron aralioides HOM05D005644 ORTHO05D007092 5.4e-99 364.4 193 90.2
Atru.chr7.2312 Acer truncatum HOM05D005644 ORTHO05D007092 7.1e-99 364.0 191 90.6
Dinv39995 Davidia involucrata HOM05D005644 ORTHO05D007092 7.1e-99 364.0 190 92.1
Nn1g04949 Nelumbo nucifera HOM05D005644 ORTHO05D007092 7.1e-99 364.0 193 90.7
CsaV3_3G042790 Cucumis sativus L. HOM05D005644 ORTHO05D007092 1.6e-98 362.8 193 89.1
Psat4g094240 Pisum sativum HOM05D005644 ORTHO05D007092 2.1e-98 362.5 193 89.6
vmacro17823 Vaccinium macrocarpon HOM05D005644 ORTHO05D007092 3.5e-98 361.7 194 90.7
arahy.Tifrunner.gnm1.ann1.SR5TCU Arachis hypogaea HOM05D005644 ORTHO05D007092 4.6e-98 361.3 190 90.0
SalBow5G1882 Salvia bowleyana HOM05D005644 ORTHO05D007092 6.0e-98 360.9 190 90.5
MD02G1145400 Malus domestica HOM05D005644 ORTHO05D007092 7.9e-98 360.5 193 89.1
GSVIVG01018941001 Vitis vinifera HOM05D005644 ORTHO05D007092 7.9e-98 360.5 193 89.6
Lj2A454T58 Lonicera japonica HOM05D005644 ORTHO05D007092 1.0e-97 360.1 193 90.2
Sed0008907 Sechium edule HOM05D005644 ORTHO05D007092 1.0e-97 360.1 193 88.1
AT2G18290 Arabidopsis thaliana HOM05D005644 ORTHO05D007092 1.3e-97 359.8 193 88.6
Ca_22319_v3 Cicer arietinum L. HOM05D005644 ORTHO05D007092 1.3e-97 359.8 193 88.6
AL3G51550 Arabidopsis lyrata HOM05D005644 ORTHO05D007092 1.8e-97 359.4 193 88.6
Eucgr.I02428 Eucalyptus grandis HOM05D005644 ORTHO05D007092 2.3e-97 359.0 193 88.6
Oeu050374.1 Olea europaea HOM05D005644 ORTHO05D007092 2.3e-97 359.0 190 90.0
MSTRG.3592 Avicennia marina HOM05D005644 ORTHO05D007092 6.7e-97 357.5 190 89.5
Medtr8g077200 Medicago truncatula HOM05D005644 ORTHO05D007092 6.7e-97 357.5 193 88.6
Cc07_g09670 Coffea canephora HOM05D005644 ORTHO05D007092 8.7e-97 357.1 190 89.5
Aa31LG8G15730 Aethionema arabicum HOM05D005644 ORTHO05D007092 3.3e-96 355.1 193 88.1
Migut.L00368 Erythranthe guttata HOM05D005644 ORTHO05D007092 3.3e-96 355.1 190 88.4
Migut.L00376 Erythranthe guttata HOM05D005644 ORTHO05D007092 3.3e-96 355.1 190 88.4
Lj4g0022669 Lotus japonicus HOM05D005644 ORTHO05D007092 3.3e-96 355.1 194 87.6
Sp3g31700 Schrenkiella parvula HOM05D005644 ORTHO05D007092 4.3e-96 354.8 193 87.6
PSO541G0643 Papaver somniferum HOM05D005644 ORTHO05D007092 7.4e-96 354.0 193 86.0
PSO675G1163 Papaver somniferum HOM05D005644 ORTHO05D007092 1.6e-95 352.8 193 85.0
Carub.0003s3246 Capsella rubella HOM05D005644 ORTHO05D007092 2.1e-95 352.4 193 87.0
CANSAT01G2444 Cannabis sativa HOM05D005644 ORTHO05D007092 3.7e-95 351.7 193 87.0
Thhalv10022866m.g Eutrema salsugineum HOM05D005644 ORTHO05D007092 6.2e-95 350.9 193 87.0
THA.LOC104819776 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 6.2e-95 350.9 193 87.0
A06p33310 Brassica napus HOM05D005644 ORTHO05D007092 2.4e-94 349.0 193 85.5
C03p59070 Brassica napus HOM05D005644 ORTHO05D007092 2.4e-94 349.0 193 85.5
BolC3t18168H Brassica oleracea HOM05D005644 ORTHO05D007092 2.4e-94 349.0 193 85.5
ClCG10G013900 Citrullus lanatus HOM05D005644 ORTHO05D007092 2.4e-94 349.0 219 78.1
Solyc02g062680.3 Solanum lycopersicum HOM05D005644 ORTHO05D007092 3.1e-94 348.6 190 87.9
Sopen02g013700 Solanum pennellii HOM05D005644 ORTHO05D007092 3.1e-94 348.6 190 87.9
SGA_v2.0_scaffold44G16541 Striga asiatica HOM05D005644 ORTHO05D007092 3.1e-94 348.6 190 87.4
Glyma.02G055400 Glycine max HOM05D005644 ORTHO05D007092 4.0e-94 348.2 193 87.0
Hund21503 Selenicereus undatus HOM05D005644 ORTHO05D007092 5.3e-94 347.8 193 85.0
PGSC0003DMG400015483 Solanum tuberosum HOM05D005644 ORTHO05D007092 5.3e-94 347.8 190 87.9
BcaB08g34803 Brassica carinata HOM05D005644 ORTHO05D007092 6.9e-94 347.4 193 85.0
Oeu002799.2 Olea europaea HOM05D005644 ORTHO05D007092 6.9e-94 347.4 190 87.4
RcHm_v2.0_Chr2g0101251 Rosa chinensis HOM05D005644 ORTHO05D007092 9.0e-94 347.1 193 86.5
CAN.G53.17 Capsicum annuum HOM05D005644 ORTHO05D007092 5.8e-93 344.4 190 86.8
unitig_37.g12363 Utricularia gibba HOM05D005644 ORTHO05D007092 7.6e-93 344.0 190 85.8
EL10Ac4g07935 Beta vulgaris HOM05D005644 ORTHO05D007092 1.0e-92 343.6 193 83.9
MBI02_g12270_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.7e-92 342.8 210 79.5
THA.LOC104804235 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 3.8e-92 341.7 193 86.0
PGR031G1764 Punica granatum HOM05D005644 ORTHO05D007092 4.9e-92 341.3 197 84.3
HanXRQChr09g0261331 Helianthus annuus HOM05D005644 ORTHO05D007092 8.4e-92 340.5 193 83.4
Sc16g0002690 Simmondsia chinensis HOM05D005644 ORTHO05D007092 8.4e-92 340.5 193 82.9
FvH4_1g13080 Fragaria vesca HOM05D005644 ORTHO05D007092 1.9e-91 339.3 190 85.8
ECA232G0363 Erigeron canadensis HOM05D005644 ORTHO05D007092 2.5e-91 339.0 193 82.4
TPR.G24098 Trifolium pratense HOM05D005644 ORTHO05D007092 2.5e-91 339.0 232 73.7
Aqoxy6G01133 Aquilegia oxysepala HOM05D005644 ORTHO05D007092 7.1e-91 337.4 193 82.4
Lsat_1_v5_gn_4_151201 Lactuca sativa HOM05D005644 ORTHO05D007092 3.5e-90 335.1 182 87.4
Rhsim11G0151400 Rhododendron simsii HOM05D005644 ORTHO05D007092 5.1e-89 331.3 247 70.0
AUR62020530 Chenopodium quinoa HOM05D005644 ORTHO05D007092 8.7e-89 330.5 193 81.9
AUR62043224 Chenopodium quinoa HOM05D005644 ORTHO05D007092 8.7e-89 330.5 193 81.9
ATR0594G186 Amborella trichopoda HOM05D005644 ORTHO05D007092 1.1e-88 330.1 193 82.4
FvH4_5g29620 Fragaria vesca HOM05D005644 ORTHO05D007092 1.1e-88 330.1 190 83.7
PGR083G1765 Punica granatum HOM05D005644 ORTHO05D007092 5.7e-88 327.8 193 81.3
BraA06t26260Z Brassica rapa HOM05D005644 ORTHO05D007092 1.4e-86 323.2 199 79.9
Os05g0579800 Oryza sativa ssp. japonica HOM05D005644 ORTHO05D007092 3.1e-86 322.0 200 77.5
Zm00001eb342630 Zea mays HOM05D005644 ORTHO05D007092 4.0e-86 321.6 177 84.2
VMungo0251G3244 Vigna mungo HOM05D005644 ORTHO05D007092 7.6e-85 317.4 170 88.8
AUR62034193 Chenopodium quinoa HOM05D005644 ORTHO05D007092 2.9e-84 315.5 193 78.8
CDE04G3399 Ceratophyllum demersum HOM05D005644 ORTHO05D007092 1.9e-83 312.8 164 87.8
Peaxi162Scf00008g03525 Petunia axillaris HOM05D005644 ORTHO05D007092 3.2e-83 312.0 190 82.6
CSS0024834 Camellia sinensis var. sinensis HOM05D005644 ORTHO05D007092 4.2e-83 311.6 164 90.9
Nitab4.5_0000136g0330 Nicotiana tabacum HOM05D005644 ORTHO05D007092 7.1e-83 310.8 172 87.2
Nitab4.5_0005482g0020 Nicotiana tabacum HOM05D005644 ORTHO05D007092 3.5e-82 308.5 174 87.4
Zm00001eb294590 Zea mays HOM05D005644 ORTHO05D007092 4.6e-82 308.1 177 80.2
Sabra05G0100200 Salix brachista HOM05D005644 ORTHO05D007092 1.5e-80 303.1 159 91.2
Atru.chr3.600 Acer truncatum HOM05D005644 ORTHO05D007092 1.8e-78 296.2 194 73.7
FAN19G1519 Fragaria x ananassa HOM05D005644 ORTHO05D007092 3.4e-77 292.0 167 84.4
BolC7t40857H Brassica oleracea HOM05D005644 ORTHO05D007092 1.0e-73 280.4 197 71.1
FAN28G2376 Fragaria x ananassa HOM05D005644 ORTHO05D003509 9.1e-70 267.3 157 84.7
FAN23G1669 Fragaria x ananassa HOM05D005644 ORTHO05D007092 1.2e-69 266.9 158 84.2
Cpa.g.sc6.131 Carica papaya HOM05D005644 ORTHO05D007092 2.2e-68 262.7 140 90.7
FAN08G2945 Fragaria x ananassa HOM05D005644 ORTHO05D007092 1.4e-67 260.0 156 82.1
Hma1.2p1_0789F.1_g218290 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 1.4e-67 260.0 134 93.3
MBI08_g40822_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.2e-66 256.9 227 59.9
HPP92_023420 Vanilla planifolia HOM05D005644 ORTHO05D007092 6.1e-66 254.6 194 67.0
BcaC06g36396 Brassica carinata HOM05D005644 ORTHO05D007092 1.2e-61 240.4 164 71.3
Mapoly0106s0034 Marchantia polymorpha HOM05D005644 ORTHO05D007092 1.2e-61 240.4 170 66.5
SGA_v2.0_scaffold2G01321 Striga asiatica HOM05D005644 ORTHO05D007092 4.2e-59 231.9 190 64.7
SMO137G0236 Selaginella moellendorffii HOM05D005644 ORTHO05D007092 1.4e-57 226.9 170 63.5
FAN26G0781 Fragaria x ananassa HOM05D000577 ORTHO05D003509 3.0e-57 225.7 133 83.5
Pp3c7_6320 Physcomitrium patens HOM05D005644 ORTHO05D007092 3.9e-57 225.3 170 62.4
AagrBONN_evm.TU.Sc2ySwM_362.2207 Anthoceros agrestis HOM05D005644 ORTHO05D007092 6.7e-57 224.6 173 62.4
CARHR108880 Cardamine hirsuta HOM05D005644 ORTHO05D007092 4.5e-53 211.8 112 89.3
FAN18G2110 Fragaria x ananassa HOM05D005644 ORTHO05D007092 1.0e-52 210.7 166 65.1
MCO15G254 Micromonas commoda HOM05D005644 ORTHO05D007092 3.2e-51 205.7 180 55.6
PRCOL_00001837 Prasinoderma coloniale HOM05D005644 ORTHO05D007092 1.7e-47 193.4 166 57.8
SEGI_22782 Sequoiadendron giganteum HOM05D005644 ORTHO05D007092 7.2e-43 177.9 110 74.5
Haze_27504 Corylus avellana HOM05D005644 ORTHO05D007092 1.4e-41 173.7 142 54.9
Cre13.g571850 Chlamydomonas reinhardtii HOM05D005644 ORTHO05D007092 7.7e-37 157.9 144 50.0
CBR_g49399 Chara braunii HOM05D005644 ORTHO05D007092 1.0e-36 157.5 106 67.0
FAN13G0528 Fragaria x ananassa HOM05D005644 ORTHO05D007092 2.2e-31 139.8 167 49.1
Hma1.2p1_2451F.1_g322360 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 2.2e-31 139.8 132 57.6
DCAR_025950 Daucus carota HOM05D005644 ORTHO05D007092 4.9e-31 138.7 135 56.3
MBI02_g42708_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 2.3e-28 129.8 135 55.6
MBI02_g23461_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 5.2e-25 118.6 219 41.6
C07p04570 Brassica napus HOM05D005644 ORTHO05D007092 1.2e-24 117.5 105 55.2
MBI02_g17151_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 8.3e-23 111.3 135 46.7
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.4e-22 110.5 123 51.2
MBI18_g01974_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 3.5e-21 105.9 70 71.4
COL.COLO4_22055 Corchorus olitorius HOM05D005644 ORTHO05D007092 2.1e-18 96.7 50 94.0
Hma1.2p1_0450F.1_g155660 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 2.1e-18 96.7 57 78.9
Hund21501 Selenicereus undatus HOM05D005644 ORTHO05D007092 1.2e-16 90.9 53 84.9
Ah.13g077660 Amaranthus hybridus HOM05D005644 ORTHO05D007092 2.4e-14 83.2 57 63.2
Thecc.08G151500 Theobroma cacao HOM05D005644 ORTHO05D007092 1.2e-08 64.3 31 90.3
MBI16_g04464_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.5e-08 63.9 96 40.6
Dinv38404 Davidia involucrata HOM05D005644 ORTHO05D007092 4.4e-08 62.4 59 55.9
Thecc.01G208400 Theobroma cacao HOM05D005644 ORTHO05D408548 2.2e-07 60.1 34 85.3


User provided reference genes

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