Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G094502 Manihot esculenta HOM05D007733 ORTHO05D009786 1.1e-22 109.0 51 100.0
Peaxi162Scf00696g00026 Petunia axillaris HOM05D007733 ORTHO05D009786 8.9e-17 89.4 50 82.0
CsaV3_4G029620 Cucumis sativus L. HOM05D007733 ORTHO05D009786 2.6e-16 87.8 50 80.0
Sed0021033 Sechium edule HOM05D007733 ORTHO05D009786 5.8e-16 86.7 50 78.0
CSS0035024 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 9.9e-16 85.9 41 92.7
MELO3C019082.2 Cucumis melo HOM05D007733 ORTHO05D009786 9.9e-16 85.9 50 78.0
Nitab4.5_0000812g0080 Nicotiana tabacum HOM05D007733 ORTHO05D009786 1.7e-15 85.1 42 88.1
Atru.chr1.1436 Acer truncatum HOM05D007733 ORTHO05D009786 2.2e-15 84.7 50 76.0
CiPaw.09G048000 Carya illinoinensis HOM05D007733 ORTHO05D009786 2.9e-15 84.3 50 76.0
Peaxi162Scf00848g00014 Petunia axillaris HOM05D007733 ORTHO05D009786 2.9e-15 84.3 42 85.7
CDE04G2892 Ceratophyllum demersum HOM05D007733 ORTHO05D009786 4.9e-15 83.6 41 87.8
MD12G1095600 Malus domestica HOM05D007733 ORTHO05D009786 4.9e-15 83.6 50 74.0
MD00G1018100 Malus domestica HOM05D007733 ORTHO05D009786 6.4e-15 83.2 50 76.0
Nitab4.5_0004588g0050 Nicotiana tabacum HOM05D007733 ORTHO05D009786 6.4e-15 83.2 41 87.8
CAN.G960.60 Capsicum annuum HOM05D007733 ORTHO05D009786 8.4e-15 82.8 41 87.8
MBI19_g20791_MAGBIO Magnolia biondii HOM05D007733 ORTHO05D009786 8.4e-15 82.8 41 87.8
PGSC0003DMG401008361 Solanum tuberosum HOM05D007733 ORTHO05D009786 1.1e-14 82.4 50 74.0
vmacro07790 Vaccinium macrocarpon HOM05D007733 ORTHO05D009786 1.1e-14 82.4 45 82.2
Hma1.2p1_0757F.1_g213300 Hydrangea macrophylla HOM05D007733 ORTHO05D009786 1.4e-14 82.0 41 90.2
Oeu063785.1 Olea europaea HOM05D007733 ORTHO05D009786 1.4e-14 82.0 50 76.0
Thecc.01G129600 Theobroma cacao HOM05D007733 ORTHO05D009786 1.4e-14 82.0 41 90.2
Peaxi162Scf00696g00024 Petunia axillaris HOM05D007733 ORTHO05D009786 1.9e-14 81.6 41 87.8
Hund24585 Selenicereus undatus HOM05D007733 ORTHO05D009786 2.4e-14 81.3 41 85.4
Glyma.12G186000 Glycine max HOM05D007733 ORTHO05D009786 3.2e-14 80.9 50 72.0
Glyma.13G315500 Glycine max HOM05D007733 ORTHO05D009786 3.2e-14 80.9 50 72.0
Solyc10g078420.2 Solanum lycopersicum HOM05D007733 ORTHO05D009786 3.2e-14 80.9 41 85.4
Prupe.7G032300 Prunus persica HOM05D007733 ORTHO05D009786 4.2e-14 80.5 50 74.0
CSS0016184 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 5.4e-14 80.1 50 74.0
CSS0036430 Camellia sinensis var. sinensis HOM05D007733 ORTHO05D009786 5.4e-14 80.1 50 74.0
Lalb_Chr06g0173691 Lupinus albus HOM05D007733 ORTHO05D009786 7.1e-14 79.7 50 72.0
Manes.01G136000 Manihot esculenta HOM05D007733 ORTHO05D009786 7.1e-14 79.7 41 87.8
Potri.006G039100 Populus trichocarpa HOM05D007733 ORTHO05D009786 7.1e-14 79.7 41 87.8
Potri.016G036400 Populus trichocarpa HOM05D007733 ORTHO05D009786 7.1e-14 79.7 41 85.4
COL.COLO4_35702 Corchorus olitorius HOM05D007733 ORTHO05D009786 9.2e-14 79.3 41 85.4
FAN01G2779 Fragaria x ananassa HOM05D000072 ORTHO05D000026 9.2e-14 79.3 43 81.4
Oeu022972.2 Olea europaea HOM05D007733 ORTHO05D009786 9.2e-14 79.3 43 81.4
Gohir.A11G247101 Gossypium hirsutum HOM05D007733 ORTHO05D009786 1.2e-13 79.0 41 85.4
Gohir.D11G257301 Gossypium hirsutum HOM05D007733 ORTHO05D009786 1.2e-13 79.0 41 85.4
Gorai.007G275700 Gossypium raimondii HOM05D007733 ORTHO05D009786 1.2e-13 79.0 41 85.4
FAN03G1257 Fragaria x ananassa HOM05D000072 ORTHO05D000026 1.6e-13 78.6 41 85.4
FAN06G4775 Fragaria x ananassa HOM05D007733 ORTHO05D009786 1.6e-13 78.6 41 85.4
FAN10G3322 Fragaria x ananassa HOM05D000072 ORTHO05D000026 1.6e-13 78.6 41 85.4
RcHm_v2.0_Chr1g0328411 Rosa chinensis HOM05D007733 ORTHO05D009786 1.6e-13 78.6 41 85.4
Os11g0136701 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 2.1e-13 78.2 41 78.0
PGR031G3673 Punica granatum HOM05D007733 ORTHO05D009786 2.1e-13 78.2 50 72.0
Cc06_g19360 Coffea canephora HOM05D007733 ORTHO05D009786 3.5e-13 77.4 41 82.9
Duzib264G0681 Durio zibethinus HOM05D007733 ORTHO05D009786 3.5e-13 77.4 41 85.4
Migut.J01653 Erythranthe guttata HOM05D007733 ORTHO05D009786 3.5e-13 77.4 41 82.9
RcHm_v2.0_Chr1g0328511 Rosa chinensis HOM05D007733 ORTHO05D009786 4.6e-13 77.0 41 82.9
SGA_v2.0_scaffold105G30286 Striga asiatica HOM05D007733 ORTHO05D009786 4.6e-13 77.0 41 82.9
SGA_v2.0_scaffold3G01720 Striga asiatica HOM05D007733 ORTHO05D009786 4.6e-13 77.0 41 82.9
Phvul.005G122800 Phaseolus vulgaris HOM05D007733 ORTHO05D009786 6.0e-13 76.6 50 70.0
Sc19g0008160 Simmondsia chinensis HOM05D007733 ORTHO05D009786 6.0e-13 76.6 41 82.9
TWI74G1577 Tripterygium wilfordii HOM05D007733 ORTHO05D009786 6.0e-13 76.6 50 72.0
Aqoxy1G00180 Aquilegia oxysepala HOM05D007733 ORTHO05D009786 7.8e-13 76.3 49 71.4
arahy.Tifrunner.gnm1.ann1.2TE5XM Arachis hypogaea HOM05D007733 ORTHO05D009786 7.8e-13 76.3 41 80.5
HanXRQChr01g0008231 Helianthus annuus HOM05D007733 ORTHO05D009786 7.8e-13 76.3 41 80.5
Os12g0133600 Oryza sativa ssp. japonica HOM05D007733 ORTHO05D009786 7.8e-13 76.3 41 75.6
Zm00001eb093420 Zea mays HOM05D007733 ORTHO05D009786 1.0e-12 75.9 42 73.8
BcaB05g21564 Brassica carinata HOM05D007733 ORTHO05D009786 1.3e-12 75.5 41 78.0
BcaC03g13244 Brassica carinata HOM05D007733 ORTHO05D009786 1.3e-12 75.5 41 78.0
C02p03760 Brassica napus HOM05D007733 ORTHO05D009786 1.3e-12 75.5 41 78.0
BolC2t06337H Brassica oleracea HOM05D007733 ORTHO05D009786 1.3e-12 75.5 41 78.0
BraA02t04971Z Brassica rapa HOM05D007733 ORTHO05D009786 1.3e-12 75.5 41 78.0
Sp6g34080 Schrenkiella parvula HOM05D007733 ORTHO05D009786 1.3e-12 75.5 41 78.0
CANSAT64G1685 Cannabis sativa HOM05D007733 ORTHO05D009786 1.7e-12 75.1 41 82.9
Psat4g102040 Pisum sativum HOM05D007733 ORTHO05D009786 1.7e-12 75.1 41 80.5
RcHm_v2.0_Chr1g0328381 Rosa chinensis HOM05D007733 ORTHO05D009786 1.7e-12 75.1 41 82.9
arahy.Tifrunner.gnm1.ann1.05QC9F Arachis hypogaea HOM05D007733 ORTHO05D009786 2.3e-12 74.7 42 76.2
THA.LOC104819346 Tarenaya hassleriana HOM05D007733 ORTHO05D009786 2.3e-12 74.7 41 75.6
Aa31LG1G18010 Aethionema arabicum HOM05D007733 ORTHO05D009786 3.0e-12 74.3 56 62.5
Medtr1g069390 Medicago truncatula HOM05D007733 ORTHO05D009786 3.9e-12 73.9 50 66.0
Thhalv10015230m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 6.6e-12 73.2 41 75.6
AL6G19610 Arabidopsis lyrata HOM05D007733 ORTHO05D009786 8.7e-12 72.8 41 75.6
AT5G09225 Arabidopsis thaliana HOM05D007733 ORTHO05D009786 8.7e-12 72.8 41 75.6
CARHR204200 Cardamine hirsuta HOM05D007733 ORTHO05D009786 8.7e-12 72.8 41 75.6
Carub.0006s0778 Capsella rubella HOM05D007733 ORTHO05D009786 1.1e-11 72.4 41 75.6
Thhalv10005241m.g Eutrema salsugineum HOM05D007733 ORTHO05D009786 1.1e-11 72.4 56 60.7
BraA06t25997Z Brassica rapa HOM05D007733 ORTHO05D009786 1.5e-11 72.0 41 73.2
DCAR_027120 Daucus carota HOM05D000958 ORTHO05D000786 2.5e-11 71.2 38 78.9
PSO384G4410 Papaver somniferum HOM05D007733 ORTHO05D009786 3.3e-11 70.9 41 70.7
GSVIVG01004069001 Vitis vinifera HOM05D007733 ORTHO05D009786 3.3e-11 70.9 50 64.0
BcaC01g02637 Brassica carinata HOM05D007733 ORTHO05D009786 4.3e-11 70.5 41 70.7
BcaB02g09770 Brassica carinata HOM05D007733 ORTHO05D009786 1.3e-10 68.9 41 68.3
A06p30480 Brassica napus HOM05D007733 ORTHO05D009786 1.6e-10 68.6 41 70.7
HPP92_015863 Vanilla planifolia HOM05D007733 ORTHO05D009786 4.8e-10 67.0 40 72.5
HPP92_015865 Vanilla planifolia HOM05D007733 ORTHO05D009786 4.8e-10 67.0 40 72.5
Lsat_1_v5_gn_5_157040 Lactuca sativa HOM05D007733 ORTHO05D009786 1.4e-09 65.5 43 72.1
RcHm_v2.0_Chr1g0328311 Rosa chinensis HOM05D007733 ORTHO05D009786 1.3e-07 58.9 36 75.0
SalBow7G0067 Salvia bowleyana HOM05D007733 ORTHO05D009786 2.9e-07 57.8 43 60.5
Gohir.A11G247151 Gossypium hirsutum HOM05D007733 ORTHO05D009786 6.4e-07 56.6 30 86.7


User provided reference genes

Program Settings