Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 5.2e-151 539.3 818 100.0
Potri.004G066600 Populus trichocarpa HOM05D004824 ORTHO05D003903 3.3e-36 157.9 191 50.8
GSVIVG01015849001 Vitis vinifera HOM05D004824 ORTHO05D003903 2.4e-34 151.8 159 48.4
Sabra04G0044400 Salix brachista HOM05D004824 ORTHO05D003903 4.0e-34 151.0 191 49.2
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 2.0e-33 148.7 145 51.0
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 2.0e-33 148.7 166 49.4
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 2.0e-33 148.7 146 52.7
Hma1.2p1_0098F.1_g048160 Hydrangea macrophylla HOM05D004824 ORTHO05D003903 1.7e-32 145.6 155 47.1
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 1.7e-32 145.6 206 43.7
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 6.4e-32 143.7 172 43.6
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 3.2e-31 141.4 145 48.3
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 4.2e-31 141.0 210 41.0
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 5.4e-31 140.6 194 46.4
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 9.2e-31 139.8 145 49.7
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 9.2e-31 139.8 149 49.7
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 1.6e-30 139.0 212 42.0
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 2.7e-30 138.3 147 45.6
Nn2g15691 Nelumbo nucifera HOM05D004824 ORTHO05D003903 3.5e-30 137.9 201 42.3
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 4.6e-30 137.5 152 48.0
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 8.7e-29 133.3 155 47.7
Duzib147G0012 Durio zibethinus HOM05D004824 ORTHO05D003903 1.1e-28 132.9 154 45.5
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 1.9e-28 132.1 219 40.6
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 1.9e-28 132.1 210 41.0
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 2.5e-28 131.7 214 40.2
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 2.5e-28 131.7 149 47.0
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 5.6e-28 130.6 149 46.3
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 5.6e-28 130.6 153 46.4
MD05G1241200 Malus domestica HOM05D004824 ORTHO05D003903 7.3e-28 130.2 149 46.3
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 9.6e-28 129.8 161 44.1
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 2.1e-27 128.6 149 46.3
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 2.1e-27 128.6 149 46.3
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 2.8e-27 128.3 186 40.9
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 2.8e-27 128.3 180 40.6
Actinidia04364 Actinidia chinensis HOM05D004824 ORTHO05D003903 3.6e-27 127.9 146 45.9
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 6.2e-27 127.1 180 39.4
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 6.2e-27 127.1 155 43.2
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 8.1e-27 126.7 163 41.7
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 1.1e-26 126.3 148 45.3
Lalb_Chr10g0093361 Lupinus albus HOM05D004824 ORTHO05D003903 1.1e-26 126.3 187 39.0
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 3.1e-26 124.8 215 38.1
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 3.1e-26 124.8 212 37.3
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 5.3e-26 124.0 174 40.8
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 9.0e-26 123.2 148 44.6
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 9.0e-26 123.2 148 44.6
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 9.0e-26 123.2 185 41.1
Sc12g0010940 Simmondsia chinensis HOM05D004824 ORTHO05D003903 9.0e-26 123.2 154 43.5
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 9.0e-26 123.2 211 35.1
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 1.2e-25 122.9 153 44.4
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 1.2e-25 122.9 212 36.8
Cc02_g09320 Coffea canephora HOM05D004824 ORTHO05D003903 2.0e-25 122.1 209 37.8
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 2.6e-25 121.7 208 39.4
MSTRG.2666 Avicennia marina HOM05D004824 ORTHO05D003903 3.4e-25 121.3 210 39.5
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 5.8e-25 120.6 149 40.9
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 7.6e-25 120.2 149 40.9
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 2.2e-24 118.6 167 36.5
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 2.2e-24 118.6 213 36.2
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 2.9e-24 118.2 150 42.0
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 6.4e-24 117.1 151 43.0
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 6.4e-24 117.1 213 36.2
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 8.4e-24 116.7 196 37.8
Lj1g0000290 Lotus japonicus HOM05D004824 ORTHO05D003903 1.1e-23 116.3 150 43.3
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 2.4e-23 115.2 153 39.9
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 7.1e-23 113.6 141 42.6
arahy.Tifrunner.gnm1.ann1.SR7DDI Arachis hypogaea HOM05D004824 ORTHO05D003903 9.3e-23 113.2 148 41.2
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 9.3e-23 113.2 151 37.1
AUR62008612 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.2e-22 112.8 200 35.5
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 2.1e-22 112.1 158 38.6
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 1.0e-21 109.8 175 39.4
arahy.Tifrunner.gnm1.ann1.X6IIW5 Arachis hypogaea HOM05D004824 ORTHO05D003903 1.0e-21 109.8 148 40.5
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 1.3e-21 109.4 152 40.8
AUR62033164 Chenopodium quinoa HOM05D004824 ORTHO05D003903 2.3e-21 108.6 200 33.5
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 2.3e-21 108.6 185 36.2
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 3.9e-21 107.8 179 36.9
Glyma.05G060900 Glycine max HOM05D004824 ORTHO05D003903 5.1e-21 107.5 147 36.7
Ca_06791_v3 Cicer arietinum L. HOM05D004824 ORTHO05D003903 1.1e-20 106.3 161 37.3
Rhsim04G0218500 Rhododendron simsii HOM05D004824 ORTHO05D003903 1.1e-20 106.3 134 47.0
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 1.5e-20 105.9 145 39.3
Haze_18457 Corylus avellana HOM05D004824 ORTHO05D003903 1.5e-20 105.9 168 40.5
arahy.Tifrunner.gnm1.ann1.XC7PBP Arachis hypogaea HOM05D004824 ORTHO05D003903 1.9e-20 105.5 92 51.1
Phvul.008G038900 Phaseolus vulgaris HOM05D004824 ORTHO05D003903 3.3e-20 104.8 188 35.1
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 9.6e-20 103.2 139 41.0
VMungo1383G0602 Vigna mungo HOM05D004824 ORTHO05D003903 2.8e-19 101.7 188 33.5
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 8.1e-19 100.1 187 33.2
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 1.4e-18 99.4 176 32.4
Medtr7g011500 Medicago truncatula HOM05D004824 ORTHO05D003903 1.4e-18 99.4 148 37.2
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 2.4e-18 98.6 149 38.3
HanXRQChr13g0425241 Helianthus annuus HOM05D004824 ORTHO05D003903 2.4e-18 98.6 217 31.8
VMungo0251G2839 Vigna mungo HOM05D004824 ORTHO05D003903 2.4e-18 98.6 92 48.9
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 6.9e-18 97.1 142 40.8
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 6.9e-18 97.1 182 34.1
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 6.9e-18 97.1 178 36.5
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 1.2e-17 96.3 182 34.6
FAN16G0917 Fragaria x ananassa HOM05D001160 ORTHO05D001092 1.2e-17 96.3 228 57.0
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 1.5e-17 95.9 153 37.3
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 4.5e-17 94.4 153 36.6
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 4.5e-17 94.4 153 36.6
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 4.5e-17 94.4 150 33.3
Ah.10g031450 Amaranthus hybridus HOM05D004824 ORTHO05D003903 1.7e-16 92.4 161 35.4
Lsat_1_v5_gn_0_9380 Lactuca sativa HOM05D004824 ORTHO05D003903 1.7e-16 92.4 215 30.2
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 2.9e-16 91.7 154 33.1
Nitab4.5_0008978g0030 Nicotiana tabacum HOM05D004824 ORTHO05D003903 3.8e-16 91.3 92 43.5
TPR.G25560 Trifolium pratense HOM05D004824 ORTHO05D003903 4.9e-16 90.9 137 35.8
SHI28137 Sapria himalayana HOM05D008459 ORTHO05D003903 1.1e-15 89.7 76 56.6
HanXRQChr17g0540701 Helianthus annuus HOM05D004824 ORTHO05D003903 5.4e-15 87.4 144 34.7
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 7.1e-15 87.0 155 34.8
SHI35543 Sapria himalayana HOM05D008459 ORTHO05D003903 9.3e-15 86.7 82 52.4
SHI33202 Sapria himalayana HOM05D008459 ORTHO05D003903 1.2e-14 86.3 76 55.3
SHI50109 Sapria himalayana HOM05D008459 ORTHO05D003903 1.6e-14 85.9 86 48.8
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 2.7e-14 85.1 163 31.9
Eucgr.F01187 Eucalyptus grandis HOM05D004824 ORTHO05D003903 3.5e-14 84.7 95 43.2
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 1.8e-13 82.4 87 42.5
SHI51070 Sapria himalayana HOM05D008459 ORTHO05D003903 1.8e-13 82.4 78 52.6
TPR.G33412 Trifolium pratense HOM05D004824 ORTHO05D003903 1.8e-13 82.4 166 30.1
SHI49399 Sapria himalayana HOM05D008459 ORTHO05D003903 2.3e-13 82.0 78 51.3
TPR.G4149 Trifolium pratense HOM05D004824 ORTHO05D003903 3.9e-13 81.3 139 33.8
SHI48935 Sapria himalayana HOM05D008459 ORTHO05D003903 5.1e-13 80.9 78 50.0
HPP92_026390 Vanilla planifolia HOM05D004824 ORTHO05D003903 8.7e-13 80.1 139 33.1
ECA246G0928 Erigeron canadensis HOM05D004824 ORTHO05D003903 1.1e-12 79.7 93 40.9
SHI41352 Sapria himalayana HOM05D008459 ORTHO05D003903 1.9e-12 79.0 78 51.3
Glyma.07G217750 Glycine max HOM05D004824 ORTHO05D003903 3.3e-12 78.2 141 31.9
Lsat_1_v5_gn_1_52160 Lactuca sativa HOM05D004824 ORTHO05D003903 5.6e-12 77.4 168 31.5
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 1.3e-11 76.3 93 40.9
HanXRQChr13g0425261 Helianthus annuus HOM05D004824 ORTHO05D003903 1.3e-11 76.3 96 40.6
SHI40908 Sapria himalayana HOM05D008459 ORTHO05D003903 1.3e-11 76.3 76 48.7
AL1G25600 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 3.7e-11 74.7 150 33.3
AT1G13800 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 8.1e-11 73.6 150 32.7
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 8.1e-11 73.6 171 30.4
SHI36947 Sapria himalayana HOM05D008459 ORTHO05D003903 8.1e-11 73.6 70 50.0
Zm00001eb413560 Zea mays HOM05D026208 ORTHO05D030341 1.1e-10 73.2 160 28.1
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 2.4e-10 72.0 184 28.8
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 4.0e-10 71.2 94 36.2
SHI35270 Sapria himalayana HOM05D008459 ORTHO05D000778 4.0e-10 71.2 72 48.6
SHI50547 Sapria himalayana HOM05D008459 ORTHO05D003903 6.9e-10 70.5 76 46.1
Sp1g12140 Schrenkiella parvula HOM05D004824 ORTHO05D017526 6.9e-10 70.5 183 31.1
CARHR118970 Cardamine hirsuta HOM05D004824 ORTHO05D003903 1.2e-09 69.7 92 37.0
SHI35413 Sapria himalayana HOM05D008459 ORTHO05D003903 1.5e-09 69.3 73 47.9
SHI49965 Sapria himalayana HOM05D008459 ORTHO05D003903 1.5e-09 69.3 74 45.9
SHI50303 Sapria himalayana HOM05D008459 ORTHO05D003903 1.5e-09 69.3 77 44.2
SHI49850 Sapria himalayana HOM05D008459 ORTHO05D003903 2.6e-09 68.6 74 45.9
SHI51640 Sapria himalayana HOM05D008459 ORTHO05D003903 3.4e-09 68.2 70 47.1
AUR62027511 Chenopodium quinoa HOM05D004824 ORTHO05D003903 5.8e-09 67.4 92 40.2
Glyma.07G217800 Glycine max HOM05D004824 ORTHO05D003903 1.0e-08 66.6 59 42.4
MELO3C010547.2 Cucumis melo HOM05D004824 ORTHO05D003903 1.3e-08 66.2 73 43.8
A06p09890 Brassica napus HOM05D004824 ORTHO05D003903 1.7e-08 65.9 197 27.9
BraA06t24177Z Brassica rapa HOM05D004824 ORTHO05D003903 1.7e-08 65.9 173 31.8
MELO3C003888.2 Cucumis melo HOM05D007639 ORTHO05D009509 2.9e-08 65.1 142 29.6
Oeu060442.1 Olea europaea HOM05D004824 ORTHO05D003903 2.9e-08 65.1 57 47.4
SHI39683 Sapria himalayana HOM05D008459 ORTHO05D003903 2.9e-08 65.1 70 44.3
SHI47034 Sapria himalayana HOM05D008459 ORTHO05D003903 2.9e-08 65.1 68 45.6
SHI48635 Sapria himalayana HOM05D008459 ORTHO05D003903 2.9e-08 65.1 64 48.4
CsaV3_3G044860 Cucumis sativus L. HOM05D007639 ORTHO05D009509 4.9e-08 64.3 142 28.9
VMungo0251G3577 Vigna mungo HOM05D004824 ORTHO05D003903 4.9e-08 64.3 181 27.6
TPR.G27632 Trifolium pratense HOM05D004824 ORTHO05D003903 6.4e-08 63.9 50 48.0
BcaB02g06478 Brassica carinata HOM05D004824 ORTHO05D003903 1.4e-07 62.8 168 30.4
SEGI_31001 Sequoiadendron giganteum HOM05D007358 ORTHO05D009117 1.4e-07 62.8 151 27.2
Carub.0001s1351 Capsella rubella HOM05D004824 ORTHO05D003903 1.9e-07 62.4 92 38.0
COL.COLO4_06641 Corchorus olitorius HOM05D007956 ORTHO05D010152 2.5e-07 62.0 144 26.4
SHI51582 Sapria himalayana HOM05D008459 ORTHO05D003903 2.5e-07 62.0 94 36.2
SHI49506 Sapria himalayana HOM05D008459 ORTHO05D003903 3.2e-07 61.6 67 46.3
Zm00001eb140410 Zea mays HOM05D026208 ORTHO05D030341 3.2e-07 61.6 147 28.6
Carub.0001s1352 Capsella rubella HOM05D004824 ORTHO05D017526 4.2e-07 61.2 148 30.4
SHI45214 Sapria himalayana HOM05D008459 ORTHO05D003903 4.2e-07 61.2 67 46.3
Migut.F01873 Erythranthe guttata HOM05D007358 ORTHO05D009117 5.5e-07 60.8 182 26.9
BcaC05g25286 Brassica carinata HOM05D004824 ORTHO05D003903 7.1e-07 60.5 200 28.5
C05p11650 Brassica napus HOM05D004824 ORTHO05D003903 7.1e-07 60.5 200 28.5
BolC5t29912H Brassica oleracea HOM05D004824 ORTHO05D003903 7.1e-07 60.5 200 28.5
MD09G1028300 Malus domestica HOM05D007358 ORTHO05D009117 9.3e-07 60.1 158 29.7
Sed0014013 Sechium edule HOM05D007893 ORTHO05D010042 9.3e-07 60.1 143 25.9
Manes.08G089400 Manihot esculenta HOM05D000104 ORTHO05D009920 1.2e-06 59.7 178 28.1
PGR142G1723 Punica granatum HOM05D007358 ORTHO05D009117 1.2e-06 59.7 150 29.3
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 1.2e-06 59.7 51 45.1
Ah.02g120040 Amaranthus hybridus HOM05D007496 ORTHO05D009479 1.6e-06 59.3 142 28.9
ATR0680G090 Amborella trichopoda HOM05D007893 ORTHO05D010042 1.6e-06 59.3 143 24.5
MD14G1081200 Malus domestica HOM05D007893 ORTHO05D010042 2.1e-06 58.9 127 26.0
Psat3g199560 Pisum sativum HOM05D004824 ORTHO05D003903 2.1e-06 58.9 98 31.6
Duzib093G1018 Durio zibethinus HOM05D007639 ORTHO05D009509 2.7e-06 58.5 144 27.8
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 3.5e-06 58.2 167 26.3
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 3.5e-06 58.2 167 26.3
SHI43740 Sapria himalayana HOM05D008459 ORTHO05D003903 3.5e-06 58.2 85 36.5
SHI39069 Sapria himalayana HOM05D008459 ORTHO05D003903 4.6e-06 57.8 60 45.0
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 6.0e-06 57.4 167 26.3
ClCG05G019220 Citrullus lanatus HOM05D007639 ORTHO05D009509 7.9e-06 57.0 140 27.1


User provided reference genes

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