Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G085800 Manihot esculenta HOM05D006994 ORTHO05D008229 0.0e+00 1743.0 949 100.0
QL08p043727 Quercus lobata HOM05D006994 ORTHO05D008229 7.0e-147 525.8 1133 37.7
Dinv06483 Davidia involucrata HOM05D006994 ORTHO05D008229 4.1e-131 473.4 1115 33.5
Dinv12707 Davidia involucrata HOM05D006994 ORTHO05D008229 5.2e-126 456.4 1098 34.9
Thecc.01G159900 Theobroma cacao HOM05D006994 ORTHO05D008229 1.2e-119 435.3 1073 34.1
Prupe.3G170300 Prunus persica HOM05D006994 ORTHO05D008229 9.8e-117 425.6 1127 33.5
TAR629G2429 Trochodendron aralioides HOM05D006994 ORTHO05D008229 1.7e-108 398.3 1115 31.0
Cfa022555 Carpinus fangiana HOM05D006994 ORTHO05D008229 4.1e-107 393.7 798 36.5
RcHm_v2.0_Chr2g0150941 Rosa chinensis HOM05D006994 ORTHO05D008229 1.3e-105 388.7 1068 34.5
Ciclev10030533m.g Citrus clementina HOM05D006994 ORTHO05D008229 1.1e-104 385.6 1087 34.6
GSVIVG01000809001 Vitis vinifera HOM05D006994 ORTHO05D008229 7.3e-104 382.9 1095 32.7
Gorai.006G007500 Gossypium raimondii HOM05D006994 ORTHO05D008229 3.4e-101 374.0 1097 32.0
Duzib187G0002 Durio zibethinus HOM05D006994 ORTHO05D008229 9.8e-101 372.5 1108 32.9
Gohir.A09G006700 Gossypium hirsutum HOM05D006994 ORTHO05D008229 1.6e-98 365.2 1100 32.5
Gohir.D09G005900 Gossypium hirsutum HOM05D006994 ORTHO05D008229 1.7e-97 361.7 1096 31.6
Duzib147G0646 Durio zibethinus HOM05D006994 ORTHO05D008229 6.6e-97 359.8 1029 33.4
Nn3g20985 Nelumbo nucifera HOM05D006994 ORTHO05D008229 1.1e-91 342.4 1136 31.7
FvH4_6g37820 Fragaria vesca HOM05D006994 ORTHO05D008229 3.2e-91 340.9 1085 31.1
FAN14G2472 Fragaria x ananassa HOM05D006994 ORTHO05D008229 1.6e-90 338.6 1083 31.0
FAN02G4438 Fragaria x ananassa HOM05D006994 ORTHO05D008229 1.0e-89 335.9 1080 30.6
TAR627G0262 Trochodendron aralioides HOM05D006994 ORTHO05D008229 1.6e-87 328.6 796 32.8
MD09G1155600 Malus domestica HOM05D006994 ORTHO05D008229 8.1e-87 326.2 1112 30.3
Actinidia32524 Actinidia chinensis HOM05D006994 ORTHO05D008229 1.6e-82 312.0 1038 29.9
FAN09G0855 Fragaria x ananassa HOM05D006994 ORTHO05D008229 1.0e-81 309.3 1143 29.7
CANSAT64G1952 Cannabis sativa HOM05D006994 ORTHO05D008229 3.0e-81 307.8 1098 29.4
Atru.chr6.1474 Acer truncatum HOM05D006994 ORTHO05D008229 6.2e-79 300.1 753 33.9
Actinidia11193 Actinidia chinensis HOM05D006994 ORTHO05D008229 4.4e-77 293.9 973 31.6
CiPaw.03G188200 Carya illinoinensis HOM05D006994 ORTHO05D008229 4.2e-75 287.3 645 34.3
CSS0008190 Camellia sinensis var. sinensis HOM05D006994 ORTHO05D008229 4.6e-74 283.9 837 31.4
Nn6g34417 Nelumbo nucifera HOM05D006994 ORTHO05D008229 6.0e-74 283.5 1112 29.1
vmacro23412 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 4.0e-70 270.8 1029 28.2
COL.COLO4_33721 Corchorus olitorius HOM05D006994 ORTHO05D008229 9.0e-70 269.6 833 30.4
Lj1A585G38 Lonicera japonica HOM05D006994 ORTHO05D008229 2.0e-69 268.5 978 32.6
TWI59G0403 Tripterygium wilfordii HOM05D006994 ORTHO05D008229 2.4e-67 261.5 1075 28.4
Rhsim06G0121200 Rhododendron simsii HOM05D006994 ORTHO05D008229 2.3e-65 255.0 1024 26.7
Cpa.g.sc50.71 Carica papaya HOM05D006994 ORTHO05D008229 5.1e-57 227.3 841 28.4
Hma1.2p1_0036F.1_g023730 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 3.3e-56 224.6 760 29.6
CsaV3_6G037970 Cucumis sativus L. HOM05D006994 ORTHO05D008229 1.6e-55 222.2 1049 27.3
Eucgr.A01960 Eucalyptus grandis HOM05D006994 ORTHO05D008229 3.7e-55 221.1 1086 30.8
PGR042G2686 Punica granatum HOM05D006994 ORTHO05D008229 1.1e-54 219.5 971 29.1
MD17G1141700 Malus domestica HOM05D006994 ORTHO05D008229 9.0e-54 216.5 828 30.4
Glyma.02G288000 Glycine max HOM05D006994 ORTHO05D008229 1.2e-53 216.1 1078 25.2
MELO3C014460.2 Cucumis melo HOM05D006994 ORTHO05D008229 6.5e-52 210.3 1055 25.9
Sed0021960 Sechium edule HOM05D006994 ORTHO05D008229 6.1e-50 203.8 1046 25.3
Phvul.008G190400 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 5.1e-49 200.7 1077 28.1
ClCG09G022300 Citrullus lanatus HOM05D006994 ORTHO05D008229 6.7e-49 200.3 1062 27.7
Glyma.14G026900 Glycine max HOM05D006994 ORTHO05D008229 1.6e-47 195.7 1064 27.3
Cc05_g09220 Coffea canephora HOM05D006994 ORTHO05D008229 3.1e-46 191.4 1047 24.6
Medtr5g091810 Medicago truncatula HOM05D006994 ORTHO05D008229 5.3e-46 190.7 1061 25.4
Aqoxy4G00195 Aquilegia oxysepala HOM05D006994 ORTHO05D008229 4.5e-45 187.6 1077 24.9
VMungo0647G0009 Vigna mungo HOM05D006994 ORTHO05D008229 1.3e-44 186.0 1082 27.6
Ca_06289_v3 Cicer arietinum L. HOM05D006994 ORTHO05D008229 1.1e-43 183.0 1107 25.8
LjContig00310g0024424 Lotus japonicus HOM05D006994 ORTHO05D008229 2.5e-43 181.8 1079 25.8
Glyma.18G104900 Glycine max HOM05D006994 ORTHO05D008229 3.2e-43 181.4 974 26.3
Lalb_Chr04g0248671 Lupinus albus HOM05D006994 ORTHO05D008229 9.4e-43 179.9 1037 28.8
Glyma.08G310800 Glycine max HOM05D006994 ORTHO05D008229 2.7e-42 178.3 1015 27.9
PSO675G3324 Papaver somniferum HOM05D006994 ORTHO05D008229 3.9e-41 174.5 1159 27.4
arahy.Tifrunner.gnm1.ann1.0D28PY Arachis hypogaea HOM05D006994 ORTHO05D008229 2.2e-39 168.7 1079 26.9
PSO541G2047 Papaver somniferum HOM05D006994 ORTHO05D008229 6.9e-38 163.7 1143 27.3
SalBow7G4498 Salvia bowleyana HOM05D006994 ORTHO05D008229 1.2e-37 162.9 1004 26.2
Nitab4.5_0007153g0010 Nicotiana tabacum HOM05D006994 ORTHO05D008229 1.3e-36 159.5 1038 24.0
Psat0s1339g0080 Pisum sativum HOM05D006994 ORTHO05D008229 1.7e-36 159.1 1088 24.9
Nitab4.5_0001121g0180 Nicotiana tabacum HOM05D006994 ORTHO05D008229 1.1e-35 156.4 998 23.8
MSTRG.15058 Avicennia marina HOM05D006994 ORTHO05D008229 2.1e-34 152.1 1021 24.4
Sed0007753 Sechium edule HOM05D006994 ORTHO05D008229 1.1e-32 146.4 1023 23.6
arahy.Tifrunner.gnm1.ann1.T2GFFQ Arachis hypogaea HOM05D006994 ORTHO05D008229 9.7e-32 143.3 837 24.7
DCAR_021306 Daucus carota HOM05D006994 ORTHO05D008229 1.5e-29 136.0 765 22.6
Sopen07g029270 Solanum pennellii HOM05D006994 ORTHO05D008229 1.5e-29 136.0 964 24.5
PGSC0003DMG400017294 Solanum tuberosum HOM05D006994 ORTHO05D008229 7.7e-29 133.7 968 24.2
arahy.Tifrunner.gnm1.ann1.0VWG63 Arachis hypogaea HOM05D006994 ORTHO05D008229 2.2e-28 132.1 890 27.1
CiPaw.03G188100 Carya illinoinensis HOM05D006994 ORTHO05D008229 2.2e-28 132.1 173 46.8
VMungo0540G1807 Vigna mungo HOM05D006994 ORTHO05D008229 1.5e-27 129.4 808 24.4
arahy.Tifrunner.gnm1.ann1.EW4W42 Arachis hypogaea HOM05D006994 ORTHO05D008229 5.5e-27 127.5 1029 26.9
Solyc07g055910.4 Solanum lycopersicum HOM05D006994 ORTHO05D008229 2.1e-26 125.6 871 25.4
TPR.G12670 Trifolium pratense HOM05D006994 ORTHO05D008229 1.4e-25 122.9 551 26.7
Peaxi162Scf00154g00620 Petunia axillaris HOM05D006994 ORTHO05D008229 5.2e-25 120.9 657 23.7
Cfa022556 Carpinus fangiana HOM05D006994 ORTHO05D008229 8.8e-25 120.2 155 46.5
CAN.G585.58 Capsicum annuum HOM05D006994 ORTHO05D008229 2.6e-24 118.6 1042 23.3
vmacro12443 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 9.7e-24 116.7 342 30.1
Oeu041607.1 Olea europaea HOM05D006994 ORTHO05D008229 1.7e-23 115.9 469 27.9
Lalb_Chr17g0348341 Lupinus albus HOM05D006994 ORTHO05D008229 3.7e-23 114.8 782 23.8
CAN.G1332.1 Capsicum annuum HOM05D006994 ORTHO05D008229 4.1e-22 111.3 805 22.9
Phvul.006G035100 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 2.0e-21 109.0 393 28.0
FAN05G1234 Fragaria x ananassa HOM05D006994 ORTHO05D008229 2.2e-20 105.5 172 39.5
Hma1.2p1_0036F.1_g023740 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 2.2e-20 105.5 183 37.2
CDE08G1216 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 2.9e-20 105.1 756 24.7
COL.COLO4_33720 Corchorus olitorius HOM05D006994 ORTHO05D008229 2.1e-18 99.0 130 43.1
Cpa.g.sc50.70 Carica papaya HOM05D006994 ORTHO05D008229 3.6e-18 98.2 156 41.0
VMungo0540G1881 Vigna mungo HOM05D006994 ORTHO05D008229 3.6e-18 98.2 175 32.6
CAN.G1481.2 Capsicum annuum HOM05D006994 ORTHO05D008229 5.7e-16 90.9 781 21.4
Psat5g180160 Pisum sativum HOM05D006994 ORTHO05D008229 1.1e-14 86.7 289 29.1
Thhalv10005808m.g Eutrema salsugineum HOM05D014107 ORTHO05D008229 5.3e-14 84.3 711 21.2
FAN05G3500 Fragaria x ananassa HOM05D006994 ORTHO05D008229 5.9e-13 80.9 177 35.0
AL5G40540 Arabidopsis lyrata HOM05D014107 ORTHO05D008229 2.9e-12 78.6 107 40.2
Atru.chr6.1475 Acer truncatum HOM05D006994 ORTHO05D008229 8.5e-12 77.0 64 51.6
BcaC07g40225 Brassica carinata HOM05D014107 ORTHO05D008229 1.5e-11 76.3 62 54.8
AT3G58770 Arabidopsis thaliana HOM05D014107 ORTHO05D008229 5.5e-11 74.3 59 59.3
CDE02G3923 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 1.6e-10 72.8 531 24.7
BcaC07g40294 Brassica carinata HOM05D014107 ORTHO05D003056 2.1e-10 72.4 58 56.9
C08p34100 Brassica napus HOM05D014107 ORTHO05D003056 2.1e-10 72.4 58 56.9
ATR0602G060 Amborella trichopoda HOM05D006994 ORTHO05D008229 6.1e-10 70.9 239 30.1
MSTRG.6762 Avicennia marina HOM05D006994 ORTHO05D008229 6.1e-10 70.9 156 28.8
Sp5g04070 Schrenkiella parvula HOM05D014107 ORTHO05D008229 8.0e-10 70.5 55 54.5
CARHR169160 Cardamine hirsuta HOM05D014107 ORTHO05D008229 6.8e-09 67.4 55 54.5
A09p51320 Brassica napus HOM05D014107 ORTHO05D003056 1.2e-08 66.6 80 41.2
BraA09t40573Z Brassica rapa HOM05D014107 ORTHO05D003056 4.4e-08 64.7 79 40.5
Migut.H02109 Erythranthe guttata HOM05D006994 ORTHO05D008229 4.4e-08 64.7 82 34.1
HPP92_005186 Vanilla planifolia HOM05D006994 ORTHO05D008229 2.2e-07 62.4 152 29.6
THA.LOC104804894 Tarenaya hassleriana HOM05D014107 ORTHO05D008229 3.7e-07 61.6 428 24.5
CDE02G3671 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 8.3e-07 60.5 81 37.0
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 4.1e-06 58.2 55 43.6
SEGI_38675 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 4.1e-06 58.2 57 43.9
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 9.1e-06 57.0 78 41.0


User provided reference genes

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