Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G084700 Manihot esculenta HOM05D002705 ORTHO05D009765 6.9e-156 553.9 273 100.0
Potri.005G202300 Populus trichocarpa HOM05D002705 ORTHO05D009765 1.6e-67 260.4 297 48.5
Ciclev10033364m.g Citrus clementina HOM05D002705 ORTHO05D009765 2.1e-59 233.4 295 45.1
TAR627G0723 Trochodendron aralioides HOM05D002705 ORTHO05D009765 1.4e-52 210.7 245 45.3
Dinv00192 Davidia involucrata HOM05D002705 ORTHO05D009765 2.1e-51 206.8 232 46.1
GSVIVG01020876001 Vitis vinifera HOM05D002705 ORTHO05D009765 2.1e-51 206.8 239 46.9
CSS0039583 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D009765 2.7e-51 206.5 299 42.5
Atru.chr6.2088 Acer truncatum HOM05D002705 ORTHO05D009765 1.5e-49 200.7 242 45.9
QL08p044244 Quercus lobata HOM05D002705 ORTHO05D009765 5.6e-49 198.7 293 43.0
Peaxi162Scf00035g00292 Petunia axillaris HOM05D002705 ORTHO05D009765 1.1e-47 194.5 293 41.3
Sabra05G0153700 Salix brachista HOM05D002705 ORTHO05D009765 4.0e-47 192.6 207 50.7
Nn4g26472 Nelumbo nucifera HOM05D002705 ORTHO05D009765 5.2e-47 192.2 295 41.0
Rhsim06G0115800 Rhododendron simsii HOM05D002705 ORTHO05D009765 6.8e-47 191.8 299 41.1
Nn3g20892 Nelumbo nucifera HOM05D002705 ORTHO05D009765 2.6e-46 189.9 233 43.3
Cpa.g.sc50.86 Carica papaya HOM05D002705 ORTHO05D009765 5.8e-46 188.7 256 42.6
MELO3C014476.2 Cucumis melo HOM05D002705 ORTHO05D009765 5.8e-46 188.7 296 40.9
Prupe.3G173400 Prunus persica HOM05D002705 ORTHO05D009765 2.2e-45 186.8 299 39.1
Migut.M00492 Erythranthe guttata HOM05D002705 ORTHO05D009765 1.1e-44 184.5 297 38.0
Actinidia06118 Actinidia chinensis HOM05D002705 ORTHO05D009765 1.9e-44 183.7 265 41.1
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 4.2e-44 182.6 287 38.7
CsaV3_6G038120 Cucumis sativus L. HOM05D002705 ORTHO05D009765 5.4e-44 182.2 296 38.9
ClCG09G022450 Citrullus lanatus HOM05D002705 ORTHO05D009765 4.6e-43 179.1 243 44.0
Hma1.2p1_0529F.1_g173240 Hydrangea macrophylla HOM05D002705 ORTHO05D009765 7.8e-43 178.3 278 40.6
FAN14G4218 Fragaria x ananassa HOM05D002705 ORTHO05D009765 1.0e-42 177.9 264 39.8
Sed0010957 Sechium edule HOM05D002705 ORTHO05D009765 1.0e-42 177.9 292 41.1
PGSC0003DMG400021284 Solanum tuberosum HOM05D002705 ORTHO05D009765 1.0e-42 177.9 295 37.6
FAN09G3459 Fragaria x ananassa HOM05D002705 ORTHO05D009765 1.3e-42 177.6 243 39.9
Solyc10g007750.1 Solanum lycopersicum HOM05D002705 ORTHO05D009765 2.3e-42 176.8 266 38.3
FvH4_6g38280 Fragaria vesca HOM05D002705 ORTHO05D009765 3.0e-42 176.4 287 38.0
VMungo0540G0513 Vigna mungo HOM05D002705 ORTHO05D009765 8.7e-42 174.9 305 37.7
Nitab4.5_0002027g0160 Nicotiana tabacum HOM05D002705 ORTHO05D009765 1.1e-41 174.5 296 36.1
Medtr3g048300 Medicago truncatula HOM05D002705 ORTHO05D009765 1.5e-41 174.1 264 40.9
Lsat_1_v5_gn_5_149781 Lactuca sativa HOM05D002705 ORTHO05D009765 3.3e-41 172.9 298 37.9
Glyma.18G107200 Glycine max HOM05D002705 ORTHO05D009765 4.3e-41 172.6 290 35.5
Lalb_Chr03g0031241 Lupinus albus HOM05D002705 ORTHO05D009765 1.3e-40 171.0 276 37.7
TPR.G16998 Trifolium pratense HOM05D002705 ORTHO05D009765 1.6e-40 170.6 252 41.7
Ca_12230_v3 Cicer arietinum L. HOM05D002705 ORTHO05D009765 2.8e-40 169.9 243 41.2
Duzib264G0970 Durio zibethinus HOM05D002705 ORTHO05D009765 4.8e-40 169.1 262 38.5
Sed0024385 Sechium edule HOM05D002705 ORTHO05D009765 1.8e-39 167.2 250 41.2
Thecc.01G162500 Theobroma cacao HOM05D002705 ORTHO05D009765 1.8e-39 167.2 258 38.8
HanXRQChr01g0007061 Helianthus annuus HOM05D002705 ORTHO05D009765 2.4e-39 166.8 304 37.5
Phvul.006G032900 Phaseolus vulgaris HOM05D002705 ORTHO05D009765 2.4e-39 166.8 248 39.9
arahy.Tifrunner.gnm1.ann1.4LV4GA Arachis hypogaea HOM05D002705 ORTHO05D009765 9.0e-39 164.9 281 38.1
arahy.Tifrunner.gnm1.ann1.Y3CUXW Arachis hypogaea HOM05D002705 ORTHO05D009765 1.5e-38 164.1 274 38.7
COL.COLO4_08449 Corchorus olitorius HOM05D000244 ORTHO05D009765 3.8e-37 159.5 255 41.2
DCAR_009797 Daucus carota HOM05D002705 ORTHO05D009765 6.4e-37 158.7 260 38.5
Lj6g0006663 Lotus japonicus HOM05D002705 ORTHO05D009765 4.2e-36 156.0 306 34.6
MSTRG.6743 Avicennia marina HOM05D002705 ORTHO05D009765 2.1e-35 153.7 271 35.4
CARHR137970 Cardamine hirsuta HOM05D002705 ORTHO05D009765 6.0e-35 152.1 288 35.8
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 1.0e-34 151.4 301 37.9
THA.LOC104802278 Tarenaya hassleriana HOM05D002705 ORTHO05D009765 1.7e-34 150.6 254 36.2
SalBow8G3518 Salvia bowleyana HOM05D002705 ORTHO05D009765 3.9e-34 149.4 290 35.5
MBI10_g34778_MAGBIO Magnolia biondii HOM05D002705 ORTHO05D009765 5.1e-34 149.1 185 47.6
PSO675G7613 Papaver somniferum HOM05D002705 ORTHO05D009765 8.7e-34 148.3 303 35.0
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 2.5e-33 146.7 291 34.7
A05p03430 Brassica napus HOM05D002705 ORTHO05D009765 3.3e-33 146.4 226 36.3
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 3.3e-33 146.4 295 34.2
Gorai.012G041100 Gossypium raimondii HOM05D002705 ORTHO05D009765 5.6e-33 145.6 322 37.0
C04p04000 Brassica napus HOM05D002705 ORTHO05D009765 7.3e-33 145.2 229 38.9
Gohir.D04G036300 Gossypium hirsutum HOM05D002705 ORTHO05D009765 9.6e-33 144.8 322 36.3
Sp4g25030 Schrenkiella parvula HOM05D002705 ORTHO05D009765 9.6e-33 144.8 243 36.2
Thhalv10017067m.g Eutrema salsugineum HOM05D002705 ORTHO05D009765 1.6e-32 144.1 243 37.0
BraA05t19329Z Brassica rapa HOM05D002705 ORTHO05D009765 6.2e-32 142.1 226 36.3
Carub.0004s2537 Capsella rubella HOM05D002705 ORTHO05D009765 6.2e-32 142.1 289 35.6
SGA_v2.0_scaffold70G23654 Striga asiatica HOM05D002705 ORTHO05D009765 6.2e-32 142.1 296 32.4
AT2G42900 Arabidopsis thaliana HOM05D002705 ORTHO05D009765 1.4e-31 141.0 236 39.0
Aqoxy1G01839 Aquilegia oxysepala HOM05D002705 ORTHO05D009765 1.8e-31 140.6 296 34.1
Aa31LG1G24660 Aethionema arabicum HOM05D000512 ORTHO05D000861 3.1e-31 139.8 264 37.1
BcaC02g12424 Brassica carinata HOM05D002705 ORTHO05D009765 4.0e-31 139.4 228 37.3
BolC4t22036H Brassica oleracea HOM05D002705 ORTHO05D009765 4.0e-31 139.4 228 37.3
Gohir.A05G379200 Gossypium hirsutum HOM05D002705 ORTHO05D009765 2.0e-30 137.1 264 36.0
FAN02G0759 Fragaria x ananassa HOM05D002705 ORTHO05D009765 4.5e-30 136.0 209 38.3
Sc21g0001660 Simmondsia chinensis HOM05D002705 ORTHO05D009765 1.3e-29 134.4 247 36.4
Eucgr.K01214 Eucalyptus grandis HOM05D002705 ORTHO05D009765 6.4e-29 132.1 197 41.1
Ah.11g045780 Amaranthus hybridus HOM05D002705 ORTHO05D009765 9.3e-28 128.3 297 33.7
Psat5g181640 Pisum sativum HOM05D002705 ORTHO05D009765 6.0e-27 125.6 197 43.1
TWI59G0299 Tripterygium wilfordii HOM05D002705 ORTHO05D009765 5.6e-25 119.0 168 41.7
Os05g0582000 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D009765 9.6e-25 118.2 244 29.5
Sopen10g003660 Solanum pennellii HOM05D002705 ORTHO05D009765 2.8e-24 116.7 190 35.8
Zm00001eb344730 Zea mays HOM05D002705 ORTHO05D009765 3.1e-23 113.2 273 28.2
PSO017G2465 Papaver somniferum HOM05D002705 ORTHO05D009765 5.3e-23 112.5 293 31.7
Zm00001eb297100 Zea mays HOM05D002705 ORTHO05D009765 5.3e-23 112.5 239 31.0
TAR627G0068 Trochodendron aralioides HOM05D002705 ORTHO05D009765 2.0e-22 110.5 112 44.6
RcHm_v2.0_Chr2g0151591 Rosa chinensis HOM05D002705 ORTHO05D009765 3.4e-22 109.8 145 39.3
CDE09G0375 Ceratophyllum demersum HOM05D002705 ORTHO05D009765 4.9e-21 105.9 224 31.2
AL4G41540 Arabidopsis lyrata HOM05D002705 ORTHO05D009765 1.9e-17 94.0 95 49.5
ATR0681G391 Amborella trichopoda HOM05D002705 ORTHO05D009765 3.3e-17 93.2 251 29.5
SalBow5G4254 Salvia bowleyana HOM05D002705 ORTHO05D009765 1.1e-15 88.2 273 27.5
CAN.G1546.3 Capsicum annuum HOM05D000541 ORTHO05D000137 5.8e-14 82.4 105 46.7
ECA248G0079 Erigeron canadensis HOM05D002705 ORTHO05D009765 1.1e-12 78.2 118 38.1
RcHm_v2.0_Chr2g0151581 Rosa chinensis HOM05D002705 ORTHO05D009765 4.2e-12 76.3 87 44.8
unitig_62.g23106 Utricularia gibba HOM05D002705 ORTHO05D009765 2.7e-11 73.6 113 39.8
AUR62039065 Chenopodium quinoa HOM05D001524 ORTHO05D001392 3.9e-10 69.7 238 22.7
HanXRQChr03g0070331 Helianthus annuus HOM05D001524 ORTHO05D001392 1.5e-09 67.8 217 23.5
Hma1.2p1_0796F.1_g219310 Hydrangea macrophylla HOM05D001524 ORTHO05D001392 4.3e-09 66.2 220 23.6
AUR62010322 Chenopodium quinoa HOM05D001524 ORTHO05D001392 3.7e-08 63.2 205 24.9
Lsat_1_v5_gn_9_112160 Lactuca sativa HOM05D001524 ORTHO05D001392 3.7e-08 63.2 219 22.8
AUR62039066 Chenopodium quinoa HOM05D001524 ORTHO05D001392 4.8e-08 62.8 205 24.9
Sopen01g030690 Solanum pennellii HOM05D001524 ORTHO05D001392 4.8e-08 62.8 199 24.1
Nn3g18309 Nelumbo nucifera HOM05D001524 ORTHO05D001392 6.3e-08 62.4 106 30.2
ECA240G1859 Erigeron canadensis HOM05D001524 ORTHO05D001392 8.2e-08 62.0 219 23.3
Lsat_1_v5_gn_9_112100 Lactuca sativa HOM05D001524 ORTHO05D001392 8.2e-08 62.0 216 21.8
DCAR_021980 Daucus carota HOM05D001524 ORTHO05D001392 1.1e-07 61.6 204 23.5
SEGI_16365 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 1.1e-07 61.6 117 38.5
SEGI_23136 Sequoiadendron giganteum HOM05D001524 ORTHO05D001392 1.1e-07 61.6 232 21.6
Oeu044279.1 Olea europaea HOM05D001524 ORTHO05D001392 1.4e-07 61.2 221 23.1
Eucgr.H03202 Eucalyptus grandis HOM05D001524 ORTHO05D001392 3.1e-07 60.1 199 22.6
Hma1.2p1_3964F.1_g338080 Hydrangea macrophylla HOM05D001524 ORTHO05D001392 5.3e-07 59.3 190 24.2
QL11p033337 Quercus lobata HOM05D001524 ORTHO05D001392 5.3e-07 59.3 170 24.1
Eucgr.G01336 Eucalyptus grandis HOM05D001524 ORTHO05D001392 6.9e-07 58.9 199 22.6
HanXRQChr03g0070321 Helianthus annuus HOM05D001524 ORTHO05D001392 6.9e-07 58.9 102 30.4
Nn3g18310 Nelumbo nucifera HOM05D001524 ORTHO05D001392 6.9e-07 58.9 106 30.2
Ah.01g011010 Amaranthus hybridus HOM05D001524 ORTHO05D001392 9.0e-07 58.5 220 24.5
Actinidia17487 Actinidia chinensis HOM05D001524 ORTHO05D001392 1.2e-06 58.2 220 22.7
Cfa004596 Carpinus fangiana HOM05D001524 ORTHO05D001392 1.2e-06 58.2 221 21.3
AL3G46920 Arabidopsis lyrata HOM05D001524 ORTHO05D001392 1.5e-06 57.8 219 21.0
FvH4_2g05010 Fragaria vesca HOM05D001524 ORTHO05D001392 1.5e-06 57.8 224 20.1
HanXRQChr03g0070441 Helianthus annuus HOM05D001524 ORTHO05D001392 1.5e-06 57.8 102 30.4
Peaxi162Scf00188g01337 Petunia axillaris HOM05D001524 ORTHO05D001392 1.5e-06 57.8 160 23.1
QL11p033161 Quercus lobata HOM05D001524 ORTHO05D001392 3.4e-06 56.6 203 24.1
DCAR_021981 Daucus carota HOM05D001524 ORTHO05D001392 4.5e-06 56.2 199 21.6
Lalb_Chr12g0210281 Lupinus albus HOM05D001524 ORTHO05D001392 4.5e-06 56.2 115 28.7
Solyc01g080790.3 Solanum lycopersicum HOM05D001524 ORTHO05D001392 4.5e-06 56.2 228 21.9
CARHR105610 Cardamine hirsuta HOM05D001524 ORTHO05D001392 7.7e-06 55.5 217 20.7
Lsat_1_v5_gn_6_53420 Lactuca sativa HOM05D001524 ORTHO05D001392 7.7e-06 55.5 229 21.8
Peaxi162Scf03271g00016 Petunia axillaris HOM05D001524 ORTHO05D001392 7.7e-06 55.5 183 23.5
PGR042G2535 Punica granatum HOM05D001524 ORTHO05D001392 7.7e-06 55.5 181 23.2


User provided reference genes

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