Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 0.0e+00 1283.5 728 100.0
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 1.6e-252 876.3 752 72.2
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 6.7e-182 641.7 773 57.2
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 2.4e-171 606.7 651 61.3
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 2.2e-164 583.6 766 55.9
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 6.9e-163 578.6 769 53.3
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 4.2e-144 516.2 771 51.4
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 1.8e-142 510.8 767 51.1
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 3.7e-140 503.1 755 53.8
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 1.0e-137 495.0 755 53.0
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 2.0e-133 480.7 771 51.8
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 9.1e-131 471.9 720 49.9
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 1.7e-129 467.6 726 51.5
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 2.5e-128 463.8 804 48.3
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 3.3e-128 463.4 711 49.8
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 9.8e-125 451.8 722 48.5
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 2.4e-123 447.2 788 49.7
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 1.1e-120 438.3 771 49.5
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 2.5e-112 410.6 781 46.9
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 4.3e-112 409.8 765 48.5
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 1.2e-111 408.3 717 49.0
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 2.1e-111 407.5 785 46.8
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 4.7e-111 406.4 785 46.9
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 4.7e-111 406.4 785 46.9
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 4.4e-109 399.8 790 43.2
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 8.3e-108 395.6 773 47.6
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 4.1e-107 393.3 780 46.3
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 9.2e-107 392.1 789 46.5
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 1.6e-106 391.3 780 46.2
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 3.5e-106 390.2 753 44.9
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 7.8e-106 389.0 788 45.9
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 3.9e-105 386.7 764 45.9
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 8.1e-103 379.0 801 44.8
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 4.0e-102 376.7 798 43.2
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 5.2e-102 376.3 578 49.0
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 5.2e-102 376.3 696 47.0
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 3.4e-101 373.6 781 43.4
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 3.4e-101 373.6 787 44.5
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.7e-100 371.3 712 45.8
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 2.2e-100 370.9 796 42.6
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 6.4e-100 369.4 775 43.6
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 6.4e-100 369.4 720 46.0
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 1.1e-99 368.6 789 44.2
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 2.4e-99 367.5 778 45.0
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 4.1e-99 366.7 801 42.1
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 7.8e-98 362.5 794 42.2
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.9e-97 360.1 706 45.5
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 4.7e-95 353.2 778 44.7
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 1.8e-94 351.3 778 41.8
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 1.7e-89 334.7 711 43.7
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 2.3e-89 334.3 605 45.6
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.1e-88 332.0 713 45.2
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 9.6e-88 328.9 774 40.7
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 9.6e-88 328.9 656 44.5
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 2.8e-87 327.4 750 41.5
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 4.0e-86 323.6 762 44.5
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 5.2e-86 323.2 702 44.0
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 6.9e-86 322.8 757 43.2
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 2.0e-85 321.2 775 41.2
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 2.6e-85 320.9 745 45.2
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 1.1e-83 315.5 728 42.3
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 2.4e-83 314.3 682 44.7
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 3.2e-83 313.9 762 41.2
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 5.4e-83 313.2 740 38.4
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 1.6e-82 311.6 676 43.6
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 2.1e-82 311.2 744 44.4
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 6.6e-81 306.2 661 43.0
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 9.6e-80 302.4 740 39.5
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 2.4e-78 297.7 656 45.1
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 2.6e-77 294.3 687 42.6
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 4.5e-77 293.5 778 38.6
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 9.9e-77 292.4 656 45.7
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 1.9e-75 288.1 663 40.1
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 1.9e-75 288.1 685 42.3
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 1.2e-74 285.4 737 42.7
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 1.6e-74 285.0 417 51.8
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 2.3e-73 281.2 687 42.5
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 8.7e-73 279.3 676 39.3
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 1.5e-72 278.5 444 47.5
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 2.5e-72 277.7 758 39.3
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 5.6e-72 276.6 719 37.4
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 7.4e-72 276.2 780 39.4
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 4.8e-71 273.5 707 40.0
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 1.4e-70 271.9 710 41.1
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 6.9e-70 269.6 746 39.5
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 1.5e-69 268.5 607 42.2
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 2.0e-69 268.1 728 39.3
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 5.8e-69 266.5 759 39.4
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 4.9e-68 263.5 587 44.0
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.9e-67 261.5 766 39.8
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 9.3e-67 259.2 729 37.2
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 9.3e-67 259.2 783 36.7
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 1.3e-65 255.4 674 41.7
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 1.3e-65 255.4 630 37.0
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 3.9e-65 253.8 662 39.6
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 5.1e-65 253.4 649 37.9
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 4.8e-63 246.9 806 37.3
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 7.6e-61 239.6 670 39.9
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.2e-60 238.0 708 36.3
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 3.8e-60 237.3 800 35.5
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 4.9e-60 236.9 715 38.7
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 6.5e-60 236.5 259 59.1
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 8.4e-60 236.1 770 34.9
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.4e-59 235.3 758 37.6
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 4.2e-59 233.8 753 36.3
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.0e-57 229.2 718 40.1
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 5.1e-57 226.9 724 38.3
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 8.7e-57 226.1 747 33.1
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.1e-54 219.2 723 38.9
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 1.4e-54 218.8 650 39.5
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 1.8e-54 218.4 614 37.9
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 4.1e-54 217.2 713 35.5
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 1.3e-52 212.2 651 35.0
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 2.9e-52 211.1 739 37.1
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 8.5e-52 209.5 730 35.2
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.9e-51 208.4 649 38.1
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 7.2e-51 206.5 649 36.5
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 1.2e-50 205.7 667 34.6
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 2.7e-50 204.5 636 39.9
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 3.9e-49 200.7 660 36.1
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 6.7e-49 199.9 688 35.2
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 3.3e-48 197.6 488 42.2
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 4.3e-48 197.2 720 33.1
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 9.7e-48 196.1 586 37.4
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 1.2e-45 189.1 429 45.9
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.7e-44 185.3 234 50.9
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 2.9e-44 184.5 606 36.6
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 3.8e-44 184.1 640 35.2
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 5.0e-44 183.7 642 34.6
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 6.5e-44 183.3 418 49.3
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 6.5e-44 183.3 733 32.9
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 7.2e-43 179.9 423 38.3
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 2.7e-42 177.9 407 41.3
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.4e-41 175.6 733 33.6
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 3.7e-39 167.5 643 34.1
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 5.3e-38 163.7 132 66.7
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 5.3e-38 163.7 623 32.6
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 2.6e-37 161.4 635 32.3
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 3.5e-37 161.0 302 43.4
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.0e-36 159.5 403 44.4
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 3.2e-35 154.5 741 32.1
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 2.1e-34 151.8 663 32.7
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 3.6e-34 151.0 206 49.0
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 5.2e-33 147.1 696 30.7
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.1e-32 146.0 703 31.0
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 4.5e-29 134.0 403 42.9
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.0e-28 132.9 211 48.3
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 1.7e-28 132.1 516 33.5
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 2.0e-24 118.6 527 32.1
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 2.8e-23 114.8 560 30.4
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 2.8e-23 114.8 560 30.4
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 1.0e-20 106.3 110 60.0
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 2.9e-20 104.8 516 34.3
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 1.9e-19 102.1 516 33.9
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 9.4e-19 99.8 139 52.5
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 3.4e-16 91.3 552 30.4
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 7.5e-16 90.1 223 39.5
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 9.8e-16 89.7 497 27.8
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 4.8e-15 87.4 129 48.8
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 6.3e-15 87.0 208 38.5
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 9.1e-14 83.2 237 32.9
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 2.3e-12 78.6 115 48.7
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 2.9e-12 78.2 113 53.1
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 1.5e-11 75.9 116 46.6
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 5.5e-11 73.9 322 29.5
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 6.1e-10 70.5 416 26.7
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 8.0e-10 70.1 60 66.7
ATR0124G054 Amborella trichopoda HOM05D003795 ORTHO05D004308 5.7e-08 63.9 582 28.9
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 7.5e-08 63.5 288 32.3


User provided reference genes

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