Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 1.9e-298 1028.5 539 100.0
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 3.3e-255 884.8 532 87.0
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 2.8e-254 881.7 539 86.1
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 2.0e-252 875.5 539 84.8
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 5.9e-252 874.0 509 88.8
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 1.3e-251 872.8 503 89.3
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 5.0e-251 870.9 508 88.8
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 8.5e-251 870.2 539 85.0
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 1.9e-250 869.0 523 86.6
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 5.5e-250 867.5 523 86.6
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 1.0e-248 863.2 539 83.3
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 7.5e-247 857.1 534 83.5
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 7.5e-247 857.1 539 82.9
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 9.8e-247 856.7 539 82.4
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 2.8e-246 855.1 539 82.9
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 3.7e-246 854.7 539 83.1
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 3.7e-246 854.7 542 81.9
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 8.3e-246 853.6 539 82.9
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 8.3e-246 853.6 542 81.9
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 1.1e-245 853.2 550 83.1
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 1.8e-245 852.4 539 81.8
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 2.4e-245 852.0 539 82.6
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 4.1e-245 851.3 539 82.2
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 4.1e-245 851.3 539 82.4
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 5.4e-245 850.9 543 82.3
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 9.1e-245 850.1 541 83.7
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 1.2e-244 849.7 501 86.8
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 1.7e-243 845.9 533 82.6
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 2.9e-243 845.1 539 82.4
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 2.9e-243 845.1 539 81.1
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 5.0e-243 844.3 546 80.0
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 1.1e-242 843.2 533 82.2
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 1.5e-242 842.8 549 80.7
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 4.2e-242 841.3 541 81.3
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 5.5e-242 840.9 507 84.4
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 3.6e-241 838.2 501 85.8
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 3.6e-241 838.2 553 80.1
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 1.0e-240 836.6 543 81.4
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 1.0e-240 836.6 512 83.6
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 1.4e-240 836.3 540 81.3
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 2.9e-235 818.5 541 79.7
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 1.0e-232 810.1 501 82.0
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 5.2e-232 807.7 529 80.0
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 2.6e-231 805.4 556 77.0
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 3.7e-230 801.6 501 81.0
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 1.1e-229 800.0 501 80.8
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 4.1e-229 798.1 501 80.6
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 7.8e-228 793.9 510 80.0
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 3.0e-227 792.0 500 81.2
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 6.6e-227 790.8 551 76.4
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 1.9e-226 789.3 539 76.8
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 2.5e-226 788.9 514 80.2
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 5.6e-226 787.7 539 77.0
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 7.3e-226 787.3 514 79.2
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 1.8e-224 782.7 531 78.9
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 1.8e-224 782.7 546 75.6
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 2.3e-224 782.3 541 75.4
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 5.2e-224 781.2 499 79.2
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 8.9e-224 780.4 539 75.9
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 1.2e-223 780.0 542 76.4
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 2.0e-223 779.2 543 78.1
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 3.4e-223 778.5 539 77.4
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 4.4e-223 778.1 531 75.0
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 1.4e-221 773.1 539 75.5
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 4.1e-221 771.5 538 75.5
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 7.0e-221 770.8 501 80.4
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 7.0e-221 770.8 500 79.8
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 2.7e-220 768.8 530 77.0
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 3.5e-220 768.5 539 75.0
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 7.8e-220 767.3 535 75.9
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 3.0e-219 765.4 500 79.0
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 5.0e-219 764.6 563 72.6
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 6.6e-219 764.2 508 79.7
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 6.6e-219 764.2 514 76.7
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 8.6e-219 763.8 500 79.0
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 8.6e-219 763.8 637 67.5
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 4.3e-218 761.5 542 75.5
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 6.2e-217 757.7 555 72.8
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 8.1e-217 757.3 549 72.7
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 1.5e-215 753.1 501 77.6
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 2.9e-214 748.8 483 80.7
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 2.7e-212 742.3 504 76.8
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 1.7e-211 739.6 611 66.6
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 1.1e-202 710.3 504 74.2
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 9.9e-199 697.2 488 73.2
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 2.4e-197 692.6 592 65.2
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 1.0e-195 687.2 512 72.1
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 1.3e-195 686.8 509 69.4
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 5.1e-195 684.9 541 69.5
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 1.1e-194 683.7 424 83.7
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 2.5e-194 682.6 544 66.0
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 5.8e-191 671.4 585 63.1
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 1.7e-190 669.8 437 80.3
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 1.9e-181 639.8 530 62.5
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 1.9e-181 639.8 530 62.5
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 2.4e-176 622.9 471 72.2
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 4.6e-172 608.6 462 67.1
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 4.8e-169 598.6 398 76.9
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 3.8e-166 589.0 516 59.1
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 2.6e-159 566.2 487 59.8
Cpa.g.sc108.2 Carica papaya HOM05D004787 ORTHO05D006972 5.5e-157 558.5 367 80.9
Oeu022144.1 Olea europaea HOM05D004787 ORTHO05D006972 1.8e-155 553.5 389 76.1
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 3.0e-155 552.7 360 78.1
CAN.G809.96 Capsicum annuum HOM05D004787 ORTHO05D006972 6.3e-145 518.5 332 79.5
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 1.6e-132 477.2 322 77.3
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 2.3e-123 446.8 310 75.8
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 4.0e-123 446.0 249 90.0
HanXRQChr16g0532221 Helianthus annuus HOM05D004787 ORTHO05D006972 7.0e-112 408.7 464 55.6
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 2.0e-111 407.1 504 45.4
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 2.1e-103 380.6 240 80.4
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 6.6e-102 375.6 527 42.7
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 5.2e-91 339.3 490 41.0
CDE02G3895 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 9.9e-82 308.5 319 58.0
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 9.0e-75 285.4 173 82.1
Cpa.g.sc108.3 Carica papaya HOM05D004787 ORTHO05D006972 9.3e-56 222.2 199 63.3
PSO409G0053 Papaver somniferum HOM05D004787 ORTHO05D006972 9.7e-53 212.2 493 34.9
Cfa023088 Carpinus fangiana HOM05D004787 ORTHO05D006972 1.1e-51 208.8 506 34.8
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 1.4e-48 198.4 118 84.7
PSO339G1514 Papaver somniferum HOM05D004787 ORTHO05D303367 1.9e-48 198.0 476 35.5
Medtr8g023320 Medicago truncatula HOM05D004787 ORTHO05D006972 1.2e-39 168.7 129 68.2
PSO478G0028 Papaver somniferum HOM05D004787 ORTHO05D006972 2.7e-39 167.5 290 40.7
PSO675G3772 Papaver somniferum HOM05D004787 ORTHO05D302583 6.3e-36 156.4 470 32.6
PSO409G0034 Papaver somniferum HOM05D004787 ORTHO05D006972 8.2e-36 156.0 467 32.3
PSO407G0282 Papaver somniferum HOM05D004787 ORTHO05D006972 1.2e-34 152.1 481 31.2
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 8.0e-31 139.4 86 75.6
PSO063G0274 Papaver somniferum HOM05D004787 ORTHO05D006972 5.7e-29 133.3 331 35.6
PSO339G2591 Papaver somniferum HOM05D004787 ORTHO05D006972 4.8e-28 130.2 275 40.0
PSO339G2032 Papaver somniferum HOM05D004787 ORTHO05D006972 6.3e-28 129.8 275 39.6
PSO675G1486 Papaver somniferum HOM05D004787 ORTHO05D006972 5.3e-27 126.7 300 34.3
PSO478G4874 Papaver somniferum HOM05D004787 ORTHO05D006972 1.6e-23 115.2 220 39.5
PSO063G0043 Papaver somniferum HOM05D004787 ORTHO05D006972 2.1e-23 114.8 365 31.8
PSO198G0032 Papaver somniferum HOM05D004787 ORTHO05D006972 2.7e-23 114.4 194 42.8
PSO478G2704 Papaver somniferum HOM05D004787 ORTHO05D303020 4.4e-21 107.1 389 29.8
PSO675G0768 Papaver somniferum HOM05D004787 ORTHO05D302482 4.4e-21 107.1 323 28.5
PSO063G3648 Papaver somniferum HOM05D004787 ORTHO05D006972 7.5e-21 106.3 142 44.4
PSO063G1019 Papaver somniferum HOM05D004787 ORTHO05D006972 3.7e-20 104.0 208 39.4
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 1.8e-19 101.7 63 76.2
PSO063G5300 Papaver somniferum HOM05D004787 ORTHO05D006972 2.4e-19 101.3 142 43.0
PSO063G4343 Papaver somniferum HOM05D004787 ORTHO05D304254 3.1e-19 100.9 410 29.3
PSO478G1956 Papaver somniferum HOM05D004787 ORTHO05D006972 3.1e-19 100.9 208 38.5
Zm00001eb168130 Zea mays HOM05D004787 ORTHO05D001664 3.1e-19 100.9 74 63.5
PSO063G2684 Papaver somniferum HOM05D004787 ORTHO05D304724 9.1e-19 99.4 427 29.3
PSO541G2889 Papaver somniferum HOM05D004787 ORTHO05D303989 8.5e-17 92.8 239 30.5
PSO170G0972 Papaver somniferum HOM05D004787 ORTHO05D303930 8.8e-14 82.8 356 28.7
PSO384G4943 Papaver somniferum HOM05D004787 ORTHO05D303805 3.7e-12 77.4 351 28.8
PSO384G2298 Papaver somniferum HOM05D004787 ORTHO05D006972 5.4e-11 73.6 161 39.1
RcHm_v2.0_Chr5g0002281 Rosa chinensis HOM05D003404 ORTHO05D029456 2.3e-06 58.2 32 81.2
FAN24G2421 Fragaria x ananassa HOM05D000203 ORTHO05D035425 5.2e-06 57.0 103 39.8
arahy.Tifrunner.gnm1.ann1.0EHY87 Arachis hypogaea HOM05D004017 ORTHO05D004612 8.9e-06 56.2 57 54.4


User provided reference genes

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