Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G081300 Manihot esculenta HOM05D006811 ORTHO05D008419 6.7e-204 713.8 351 100.0
QL02p064229 Quercus lobata HOM05D006811 ORTHO05D008419 8.0e-141 504.2 328 72.6
Sabra17G0117500 Salix brachista HOM05D006811 ORTHO05D008419 5.7e-139 498.0 312 76.3
Potri.017G139400 Populus trichocarpa HOM05D006811 ORTHO05D008419 3.2e-137 492.3 311 75.2
TWI53G0648 Tripterygium wilfordii HOM05D006811 ORTHO05D008419 3.5e-136 488.8 353 68.6
MD17G1286700 Malus domestica HOM05D006811 ORTHO05D008419 7.5e-131 471.1 311 72.0
PGSC0003DMG400016719 Solanum tuberosum HOM05D006811 ORTHO05D008419 7.5e-131 471.1 308 69.8
Phvul.006G087200 Phaseolus vulgaris HOM05D006811 ORTHO05D008419 1.7e-130 469.9 349 66.8
Sed0027023 Sechium edule HOM05D006811 ORTHO05D008419 1.7e-130 469.9 349 64.2
Duzib138G1484 Durio zibethinus HOM05D006811 ORTHO05D008419 2.2e-130 469.5 300 74.3
Atru.chr1.2130 Acer truncatum HOM05D006811 ORTHO05D008419 2.9e-130 469.2 289 74.0
Thecc.04G060000 Theobroma cacao HOM05D006811 ORTHO05D008419 1.1e-129 467.2 313 70.6
FAN28G2567 Fragaria x ananassa HOM05D006811 ORTHO05D008419 4.1e-129 465.3 295 72.2
Gorai.008G054100 Gossypium raimondii HOM05D006811 ORTHO05D008419 7.0e-129 464.5 333 66.7
MSTRG.15636 Avicennia marina HOM05D006811 ORTHO05D008419 2.7e-128 462.6 303 69.6
FAN26G0959 Fragaria x ananassa HOM05D006811 ORTHO05D008419 3.5e-128 462.2 295 71.5
Rhsim10G0185300 Rhododendron simsii HOM05D006811 ORTHO05D008419 3.5e-128 462.2 313 68.7
Sopen02g025910 Solanum pennellii HOM05D006811 ORTHO05D008419 1.0e-127 460.7 308 69.2
Gohir.A12G052300 Gossypium hirsutum HOM05D006811 ORTHO05D008419 1.3e-127 460.3 333 66.4
Peaxi162Scf00713g00019 Petunia axillaris HOM05D006811 ORTHO05D008419 1.7e-127 459.9 308 70.1
FAN23G2849 Fragaria x ananassa HOM05D006811 ORTHO05D008419 5.0e-127 458.4 294 71.1
GSVIVG01035212001 Vitis vinifera HOM05D006811 ORTHO05D008419 5.0e-127 458.4 315 69.2
TAR622G1242 Trochodendron aralioides HOM05D006811 ORTHO05D008419 1.5e-126 456.8 313 68.4
Cfa007746 Carpinus fangiana HOM05D006811 ORTHO05D008419 7.3e-126 454.5 314 69.1
RcHm_v2.0_Chr3g0488721 Rosa chinensis HOM05D006811 ORTHO05D008419 7.3e-126 454.5 297 70.7
CiPaw.03G075800 Carya illinoinensis HOM05D006811 ORTHO05D008419 2.1e-125 453.0 311 69.8
Dinv28246 Davidia involucrata HOM05D006811 ORTHO05D008419 4.7e-125 451.8 312 69.2
Actinidia40414 Actinidia chinensis HOM05D006811 ORTHO05D008419 6.2e-125 451.4 313 66.8
Aa31LG2G2700 Aethionema arabicum HOM05D006811 ORTHO05D008419 1.1e-124 450.7 301 68.8
Migut.K00747 Erythranthe guttata HOM05D006811 ORTHO05D008419 1.4e-124 450.3 298 66.8
Ciclev10013413m.g Citrus clementina HOM05D006811 ORTHO05D008419 1.8e-124 449.9 298 70.8
FvH4_1g27290 Fragaria vesca HOM05D006811 ORTHO05D008419 4.0e-124 448.7 310 68.4
Aqoxy3G04154 Aquilegia oxysepala HOM05D006811 ORTHO05D008419 1.5e-123 446.8 314 66.9
Cc07_g12750 Coffea canephora HOM05D006811 ORTHO05D008419 1.5e-123 446.8 313 66.8
arahy.Tifrunner.gnm1.ann1.A3RENN Arachis hypogaea HOM05D006811 ORTHO05D008419 2.0e-123 446.4 295 70.2
CSS0033706 Camellia sinensis var. sinensis HOM05D006811 ORTHO05D008419 4.4e-123 445.3 298 70.5
Nn4g24731 Nelumbo nucifera HOM05D006811 ORTHO05D008419 4.4e-123 445.3 296 68.9
Lalb_Chr15g0085211 Lupinus albus HOM05D006811 ORTHO05D008419 5.8e-123 444.9 311 68.5
Lj6g0026577 Lotus japonicus HOM05D006811 ORTHO05D008419 1.3e-122 443.7 313 68.1
Lj4A251G58 Lonicera japonica HOM05D006811 ORTHO05D008419 2.9e-122 442.6 335 62.1
SGA_v2.0_scaffold115G32048 Striga asiatica HOM05D006811 ORTHO05D008419 3.7e-122 442.2 286 69.9
Eucgr.F02911 Eucalyptus grandis HOM05D006811 ORTHO05D008419 6.4e-122 441.4 314 68.5
SalBow5G0387 Salvia bowleyana HOM05D006811 ORTHO05D008419 8.3e-122 441.0 299 68.2
CANSAT54G1721 Cannabis sativa HOM05D006811 ORTHO05D008419 1.1e-121 440.7 313 67.4
CsaV3_4G000630 Cucumis sativus L. HOM05D006811 ORTHO05D008419 2.4e-121 439.5 311 64.6
Hma1.2p1_0158F.1_g069620 Hydrangea macrophylla HOM05D006811 ORTHO05D008419 2.4e-121 439.5 302 68.9
SalBow5G5201 Salvia bowleyana HOM05D006811 ORTHO05D008419 5.4e-121 438.3 299 67.6
ClCG10G010680 Citrullus lanatus HOM05D006811 ORTHO05D008419 7.1e-121 438.0 313 64.5
Nitab4.5_0000483g0290 Nicotiana tabacum HOM05D006811 ORTHO05D008419 7.1e-121 438.0 296 68.2
Hund22201 Selenicereus undatus HOM05D006811 ORTHO05D008419 7.1e-121 438.0 304 68.1
Ca_17071_v3 Cicer arietinum L. HOM05D006811 ORTHO05D008419 9.2e-121 437.6 311 67.8
Lsat_1_v5_gn_2_71780 Lactuca sativa HOM05D006811 ORTHO05D008419 1.0e-119 434.1 314 64.0
Nitab4.5_0008137g0060 Nicotiana tabacum HOM05D006811 ORTHO05D008419 1.0e-119 434.1 296 68.9
AT1G65900 Arabidopsis thaliana HOM05D006811 ORTHO05D008419 2.3e-119 433.0 303 67.0
Sc06g0003070 Simmondsia chinensis HOM05D006811 ORTHO05D008419 3.0e-119 432.6 298 67.1
Carub.0002s1184 Capsella rubella HOM05D006811 ORTHO05D008419 3.9e-119 432.2 305 67.5
Sp5g20950 Schrenkiella parvula HOM05D006811 ORTHO05D008419 6.6e-119 431.4 303 68.0
AL2G23270 Arabidopsis lyrata HOM05D006811 ORTHO05D008419 8.6e-119 431.0 305 67.2
Glyma.11G212500 Glycine max HOM05D006811 ORTHO05D008419 1.9e-118 429.9 311 66.6
Medtr3g064600 Medicago truncatula HOM05D006811 ORTHO05D008419 2.5e-118 429.5 311 66.9
CARHR057790 Cardamine hirsuta HOM05D006811 ORTHO05D008419 5.6e-118 428.3 305 66.6
Glyma.18G043800 Glycine max HOM05D006811 ORTHO05D008419 9.5e-118 427.6 311 66.6
EL10Ac4g08932 Beta vulgaris HOM05D006811 ORTHO05D008419 1.2e-117 427.2 294 66.0
Thhalv10018647m.g Eutrema salsugineum HOM05D006811 ORTHO05D008419 3.6e-117 425.6 303 66.7
VMungo0540G2025 Vigna mungo HOM05D006811 ORTHO05D008419 1.1e-116 424.1 310 64.8
TPR.G26689 Trifolium pratense HOM05D006811 ORTHO05D008419 3.1e-116 422.5 311 65.9
DCAR_020444 Daucus carota HOM05D006811 ORTHO05D008419 6.8e-116 421.4 305 64.6
BcaB03g15309 Brassica carinata HOM05D006811 ORTHO05D008419 8.9e-116 421.0 311 65.6
HPP92_014601 Vanilla planifolia HOM05D006811 ORTHO05D008419 8.9e-116 421.0 351 56.4
Psat5g142440 Pisum sativum HOM05D006811 ORTHO05D008419 2.0e-115 419.9 292 67.5
HanXRQChr14g0443391 Helianthus annuus HOM05D006811 ORTHO05D008419 2.9e-114 416.0 298 63.1
THA.LOC104825578 Tarenaya hassleriana HOM05D006811 ORTHO05D008419 1.1e-113 414.1 283 66.8
C06p39240 Brassica napus HOM05D006811 ORTHO05D008419 9.2e-113 411.0 312 64.7
vmacro20465 Vaccinium macrocarpon HOM05D006811 ORTHO05D008419 1.6e-112 410.2 274 70.1
A07p33010 Brassica napus HOM05D006811 ORTHO05D008419 4.6e-112 408.7 312 64.4
BraA07t30929Z Brassica rapa HOM05D006811 ORTHO05D008419 4.6e-112 408.7 312 64.4
BcaC08g46096 Brassica carinata HOM05D006811 ORTHO05D008419 6.0e-112 408.3 312 64.7
PGR004G2199 Punica granatum HOM05D006811 ORTHO05D008419 6.0e-112 408.3 316 64.9
BolC6t39018H Brassica oleracea HOM05D006811 ORTHO05D008419 2.4e-108 396.4 349 57.9
HanXRQChr12g0365711 Helianthus annuus HOM05D006811 ORTHO05D008419 7.6e-107 391.3 296 61.8
ATR0807G007 Amborella trichopoda HOM05D006811 ORTHO05D008419 1.1e-105 387.5 313 59.7
PSO063G4300 Papaver somniferum HOM05D006811 ORTHO05D008419 2.5e-102 376.3 316 57.6
unitig_0.g2638 Utricularia gibba HOM05D006811 ORTHO05D008419 1.6e-101 373.6 296 58.4
CDE05G3344 Ceratophyllum demersum HOM05D006811 ORTHO05D008419 1.4e-100 370.5 311 56.6
Prupe.3G014300 Prunus persica HOM05D006811 ORTHO05D008419 1.8e-100 370.2 233 74.2
AUR62003402 Chenopodium quinoa HOM05D006811 ORTHO05D008419 2.1e-96 356.7 300 58.3
AUR62004775 Chenopodium quinoa HOM05D006811 ORTHO05D008419 1.3e-95 354.0 294 59.2
ECA238G0794 Erigeron canadensis HOM05D006811 ORTHO05D008419 4.5e-91 339.0 253 60.9
Cpa.g.sc178.33 Carica papaya HOM05D006811 ORTHO05D008419 4.6e-80 302.4 176 80.1
DCAR_017976 Daucus carota HOM05D006811 ORTHO05D008419 5.8e-75 285.4 215 62.3
Haze_14327 Corylus avellana HOM05D006811 ORTHO05D008419 2.5e-70 270.0 176 71.6
PSO782G1785 Papaver somniferum HOM05D006811 ORTHO05D008419 5.5e-65 252.3 201 59.2
CSS0020523 Camellia sinensis var. sinensis HOM05D006811 ORTHO05D008419 8.2e-61 238.4 158 73.4
AagrBONN_evm.TU.Sc2ySwM_368.3231 Anthoceros agrestis HOM05D006811 ORTHO05D008419 1.5e-59 234.2 307 40.7
Zm00001eb001500 Zea mays HOM05D006811 ORTHO05D008419 1.6e-56 224.2 192 54.7
Ah.06g191630 Amaranthus hybridus HOM05D006811 ORTHO05D008419 2.0e-54 217.2 298 41.3
Gohir.D12G050800 Gossypium hirsutum HOM05D006811 ORTHO05D008419 8.2e-53 211.8 179 59.8
HPP92_014605 Vanilla planifolia HOM05D006811 ORTHO05D008419 5.5e-49 199.1 190 50.5
FAN19G2462 Fragaria x ananassa HOM05D006811 ORTHO05D008419 1.0e-47 194.9 141 64.5
MELO3C017973.2 Cucumis melo HOM05D006811 ORTHO05D008419 1.4e-47 194.5 140 60.7
CSS0043986 Camellia sinensis var. sinensis HOM05D006811 ORTHO05D008419 2.5e-41 173.7 147 55.8
CBR_g31433 Chara braunii HOM05D006811 ORTHO05D008419 1.2e-32 144.8 341 29.6
FAN28G2576 Fragaria x ananassa HOM05D006811 ORTHO05D008419 1.7e-21 107.8 68 73.5
Aa31LG2G2690 Aethionema arabicum HOM05D000356 ORTHO05D000265 1.8e-20 104.4 76 60.5
arahy.Tifrunner.gnm1.ann1.JYBV0C Arachis hypogaea HOM05D006811 ORTHO05D008419 7.0e-20 102.4 90 57.8
Cre02.g081050 Chlamydomonas reinhardtii HOM05D006811 ORTHO05D008419 2.9e-18 97.1 223 30.9
PRCOL_00004838 Prasinoderma coloniale HOM05D006811 ORTHO05D008419 2.9e-18 97.1 255 31.0
A02p12460 Brassica napus HOM05D006811 ORTHO05D008419 4.3e-17 93.2 74 63.5
PRCOL_00005605 Prasinoderma coloniale HOM05D006811 ORTHO05D008419 9.5e-17 92.0 345 25.5
SEGI_18554 Sequoiadendron giganteum HOM05D006811 ORTHO05D008419 3.4e-14 83.6 71 50.7
SEGI_23786 Sequoiadendron giganteum HOM05D006811 ORTHO05D008419 2.9e-13 80.5 111 38.7
MCO05G199 Micromonas commoda HOM05D006811 ORTHO05D008419 4.9e-13 79.7 256 28.5
COL.COLO4_03698 Corchorus olitorius HOM05D006811 ORTHO05D008419 8.3e-13 79.0 68 55.9


User provided reference genes

Program Settings