Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 7.2e-111 404.1 223 100.0
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 5.4e-82 308.1 223 78.5
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 1.7e-72 276.6 218 71.1
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 1.1e-66 257.3 219 68.0
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 2.4e-66 256.1 218 68.3
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 5.4e-66 255.0 224 66.5
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 5.9e-65 251.5 221 65.6
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 5.9e-65 251.5 204 68.6
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 7.8e-65 251.1 201 72.6
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 8.6e-64 247.7 225 68.0
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 1.9e-63 246.5 210 68.6
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 2.5e-63 246.1 229 64.2
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 2.5e-63 246.1 215 67.4
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 7.3e-63 244.6 222 65.3
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 1.2e-62 243.8 202 69.3
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 6.2e-62 241.5 201 68.7
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 1.0e-61 240.7 221 63.8
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 1.8e-61 240.0 225 65.3
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.5e-60 236.9 220 63.6
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 3.4e-60 235.7 212 66.0
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 5.8e-60 235.0 202 66.3
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 5.8e-60 235.0 222 64.4
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 7.5e-60 234.6 225 62.7
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 9.8e-60 234.2 222 63.5
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 2.2e-59 233.0 181 74.0
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 3.7e-59 232.3 227 61.7
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 4.9e-59 231.9 200 67.0
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 1.1e-58 230.7 201 67.2
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 1.1e-58 230.7 211 62.6
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 3.2e-58 229.2 221 62.0
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 3.2e-58 229.2 202 65.8
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 3.2e-58 229.2 195 66.7
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 3.2e-58 229.2 191 67.0
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 5.4e-58 228.4 200 63.5
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 9.2e-58 227.6 198 64.1
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 2.7e-57 226.1 207 66.7
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 2.7e-57 226.1 191 66.5
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 3.5e-57 225.7 280 53.6
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 3.5e-57 225.7 220 62.3
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 4.6e-57 225.3 190 67.9
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 6.0e-57 224.9 191 66.5
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 7.8e-57 224.6 222 58.1
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.0e-56 224.2 203 62.6
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 1.3e-56 223.8 210 62.4
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 1.7e-56 223.4 203 63.1
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 5.0e-56 221.9 221 61.5
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 8.6e-56 221.1 203 62.6
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 1.5e-55 220.3 239 57.7
Atru.chr1.1949 Acer truncatum HOM05D004935 ORTHO05D005676 1.9e-55 219.9 165 73.3
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 3.3e-55 219.2 211 63.5
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 9.5e-55 217.6 220 59.1
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 9.5e-55 217.6 208 60.6
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 2.1e-54 216.5 203 61.1
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 2.8e-54 216.1 210 59.0
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 2.8e-54 216.1 202 60.4
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 8.1e-54 214.5 240 52.5
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 1.4e-53 213.8 199 60.3
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 1.8e-53 213.4 210 59.5
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 4.0e-53 212.2 210 58.6
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 4.0e-53 212.2 222 58.6
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 4.0e-53 212.2 196 65.8
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 8.9e-53 211.1 191 63.4
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 2.0e-52 209.9 251 51.8
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 5.8e-52 208.4 213 55.4
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 9.8e-52 207.6 199 59.3
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 2.9e-51 206.1 194 61.3
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 6.4e-51 204.9 187 62.0
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 6.4e-51 204.9 199 58.8
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 1.9e-50 203.4 204 57.8
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 2.4e-50 203.0 189 59.8
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 5.4e-50 201.8 188 61.2
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 9.2e-50 201.1 195 60.5
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 2.1e-49 199.9 189 59.8
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 2.7e-49 199.5 217 57.1
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 3.5e-49 199.1 163 68.7
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 4.6e-49 198.7 199 56.3
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 6.0e-49 198.4 203 59.1
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 1.3e-48 197.2 213 57.3
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 1.1e-47 194.1 182 62.1
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 1.2e-46 190.7 195 55.9
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 4.7e-46 188.7 194 58.2
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 1.4e-45 187.2 202 56.9
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 1.4e-45 187.2 207 55.1
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 1.4e-45 187.2 207 55.1
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 2.3e-45 186.4 184 59.8
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 4.0e-45 185.7 188 56.4
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 6.8e-45 184.9 190 57.4
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 1.5e-44 183.7 180 60.0
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 1.5e-44 183.7 180 60.0
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 2.0e-44 183.3 190 54.7
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 2.6e-44 183.0 190 57.4
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 3.4e-44 182.6 202 54.0
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 9.9e-44 181.0 188 55.9
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 1.7e-43 180.3 196 54.6
Psat2g044600 Pisum sativum HOM05D004935 ORTHO05D005676 4.9e-43 178.7 203 55.2
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 6.4e-43 178.3 207 53.6
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 1.4e-42 177.2 199 54.3
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 1.4e-42 177.2 196 52.6
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 2.4e-42 176.4 188 55.9
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 2.4e-42 176.4 199 56.3
LjContig00141g0002036 Lotus japonicus HOM05D004935 ORTHO05D005676 4.1e-42 175.6 184 57.6
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 7.1e-42 174.9 193 53.9
Phvul.008G238800 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 4.6e-41 172.2 199 53.8
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 7.8e-41 171.4 187 55.1
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 1.3e-40 170.6 175 60.6
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 1.7e-40 170.2 193 53.9
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 1.7e-40 170.2 188 50.5
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 5.1e-40 168.7 192 55.2
TPR.G9990 Trifolium pratense HOM05D004935 ORTHO05D005676 1.5e-39 167.2 203 52.2
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 1.9e-39 166.8 211 52.1
VMungo0647G1435 Vigna mungo HOM05D004935 ORTHO05D005676 1.6e-38 163.7 200 53.5
Glyma.02G242200 Glycine max HOM05D004935 ORTHO05D005676 2.1e-38 163.3 194 50.5
Medtr5g077280 Medicago truncatula HOM05D004935 ORTHO05D005676 8.1e-38 161.4 200 52.5
TAR629G3076 Trochodendron aralioides HOM05D004935 ORTHO05D005676 2.4e-37 159.8 187 55.6
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 7.6e-36 154.8 193 51.3
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 7.6e-36 154.8 193 51.3
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 7.6e-36 154.8 193 51.3
Haze_14300 Corylus avellana HOM05D004935 ORTHO05D005676 7.6e-36 154.8 267 43.1
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 1.3e-35 154.1 158 58.2
GSVIVG01026318001 Vitis vinifera HOM05D004935 ORTHO05D005676 8.4e-35 151.4 103 87.4
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 1.1e-34 151.0 190 49.5
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 2.4e-34 149.8 188 52.1
Oeu014715.1 Olea europaea HOM05D004935 ORTHO05D005676 8.7e-32 141.4 118 65.3
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 1.5e-31 140.6 169 55.0
Sed0000771 Sechium edule HOM05D004935 ORTHO05D005676 7.3e-31 138.3 212 41.0
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 2.1e-30 136.7 199 46.7
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 3.6e-30 136.0 215 44.7
HanXRQChr15g0489811 Helianthus annuus HOM05D004935 ORTHO05D005676 1.8e-29 133.7 168 51.8
DCAR_003418 Daucus carota HOM05D004935 ORTHO05D005676 1.5e-28 130.6 116 64.7
ECA246G1322 Erigeron canadensis HOM05D004935 ORTHO05D005676 1.3e-27 127.5 122 63.1
AL3G36180 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 2.1e-25 120.2 114 60.5
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 2.7e-25 119.8 192 45.8
Peaxi162Scf00085g00527 Petunia axillaris HOM05D004935 ORTHO05D005676 3.5e-25 119.4 88 73.9
AL92U10070 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 4.6e-25 119.0 112 60.7
Mapoly0035s0070 Marchantia polymorpha HOM05D004935 ORTHO05D005676 1.8e-21 107.1 189 37.0
AL6G14310 Arabidopsis lyrata HOM05D000097 ORTHO05D005676 2.6e-20 103.2 113 55.8
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05D004935 ORTHO05D005676 2.9e-19 99.8 174 36.8
CARHR196680 Cardamine hirsuta HOM05D004935 ORTHO05D005676 4.6e-17 92.4 85 68.2
Pp3c25_6290 Physcomitrium patens HOM05D004935 ORTHO05D005676 1.9e-15 87.0 148 39.9
Zm00001eb099130 Zea mays HOM05D004935 ORTHO05D005676 5.6e-15 85.5 110 47.3
CARHR196690 Cardamine hirsuta HOM05D004935 ORTHO05D005676 3.7e-14 82.8 79 54.4
FAN19G0113 Fragaria x ananassa HOM05D004935 ORTHO05D005676 1.4e-13 80.9 89 48.3
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 1.8e-13 80.5 81 60.5
SEGI_39153 Sequoiadendron giganteum HOM05D004935 ORTHO05D005676 1.8e-13 80.5 114 48.2
Pp3c6_9570 Physcomitrium patens HOM05D004935 ORTHO05D005676 3.1e-13 79.7 214 30.4
MSTRG.15645 Avicennia marina HOM05D004935 ORTHO05D005676 1.0e-11 74.7 91 42.9
Cpa.g.sc178.1 Carica papaya HOM05D004935 ORTHO05D005676 1.3e-11 74.3 93 49.5
EL10Ac2g03210 Beta vulgaris HOM05D004935 ORTHO05D005676 1.9e-10 70.5 54 61.1
CSS0034638 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 2.7e-09 66.6 45 66.7
DCAR_003417 Daucus carota HOM05D004935 ORTHO05D005676 3.5e-09 66.2 71 53.5


User provided reference genes

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