Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G078300 Manihot esculenta HOM05D007474 ORTHO05D009367 1.5e-142 509.6 272 100.0
Haze_22034 Corylus avellana HOM05D007474 ORTHO05D009367 1.5e-89 333.6 249 71.5
Haze_22037 Corylus avellana HOM05D007474 ORTHO05D009367 1.5e-89 333.6 249 71.5
Cfa013460 Carpinus fangiana HOM05D007474 ORTHO05D009367 1.6e-83 313.5 249 68.3
Dinv41187 Davidia involucrata HOM05D007474 ORTHO05D009367 1.7e-82 310.1 243 67.9
CiPaw.07G198000 Carya illinoinensis HOM05D007474 ORTHO05D009367 5.0e-82 308.5 249 66.7
GSVIVG01029310001 Vitis vinifera HOM05D007474 ORTHO05D009367 1.5e-81 307.0 251 64.9
Prupe.1G073900 Prunus persica HOM05D007474 ORTHO05D009367 2.5e-81 306.2 251 66.9
Thecc.09G187600 Theobroma cacao HOM05D007474 ORTHO05D009367 9.4e-81 304.3 251 66.1
RcHm_v2.0_Chr4g0399191 Rosa chinensis HOM05D007474 ORTHO05D009367 2.7e-80 302.8 251 64.9
Ciclev10010167m.g Citrus clementina HOM05D007474 ORTHO05D009367 1.0e-79 300.8 252 64.7
TAR625G0702 Trochodendron aralioides HOM05D007474 ORTHO05D009367 3.0e-79 299.3 251 64.5
Atru.chr7.945_Atru.chr7.946 Acer truncatum HOM05D007474 ORTHO05D009367 3.4e-78 295.8 249 64.3
FAN17G0817 Fragaria x ananassa HOM05D007474 ORTHO05D009367 4.4e-78 295.4 251 63.3
Nn8g40674 Nelumbo nucifera HOM05D007474 ORTHO05D009367 1.4e-76 290.4 251 61.0
FvH4_4g07070 Fragaria vesca HOM05D007474 ORTHO05D009367 9.1e-76 287.7 251 62.5
Duzib170G0522 Durio zibethinus HOM05D007474 ORTHO05D009367 1.6e-75 287.0 251 65.7
Phvul.009G235500 Phaseolus vulgaris HOM05D007474 ORTHO05D009367 3.5e-75 285.8 250 62.4
Actinidia02497 Actinidia chinensis HOM05D007474 ORTHO05D009367 5.9e-75 285.0 251 60.2
FAN22G0500 Fragaria x ananassa HOM05D007474 ORTHO05D009367 1.3e-74 283.9 253 62.1
FAN07G0784 Fragaria x ananassa HOM05D007474 ORTHO05D009367 1.7e-74 283.5 258 62.0
Lalb_Chr23g0276761 Lupinus albus HOM05D007474 ORTHO05D009367 8.5e-74 281.2 250 59.6
Lj6g0008723 Lotus japonicus HOM05D007474 ORTHO05D009367 2.5e-73 279.6 249 59.4
THA.LOC104813505 Tarenaya hassleriana HOM05D007474 ORTHO05D009367 3.6e-72 275.8 247 60.3
FAN12G4033 Fragaria x ananassa HOM05D007474 ORTHO05D009367 4.7e-72 275.4 256 60.5
Rhsim01G0114800 Rhododendron simsii HOM05D007474 ORTHO05D009367 4.7e-72 275.4 253 58.1
Gohir.A02G011900 Gossypium hirsutum HOM05D007474 ORTHO05D009367 8.0e-72 274.6 253 62.8
VMungo1309G2929 Vigna mungo HOM05D007474 ORTHO05D009367 2.3e-71 273.1 250 60.0
Glyma.09G060400 Glycine max HOM05D007474 ORTHO05D009367 6.8e-71 271.6 249 59.8
Psat1g143800 Pisum sativum HOM05D007474 ORTHO05D009367 6.8e-71 271.6 250 57.6
TWI63G0256 Tripterygium wilfordii HOM05D007474 ORTHO05D009367 1.2e-70 270.8 251 59.8
Rhsim01G0114300 Rhododendron simsii HOM05D007474 ORTHO05D009367 1.5e-70 270.4 253 57.3
MD16G1247400 Malus domestica HOM05D007474 ORTHO05D009367 2.0e-70 270.0 231 63.6
Medtr2g038090 Medicago truncatula HOM05D007474 ORTHO05D009367 2.0e-70 270.0 250 58.0
TPR.G7578 Trifolium pratense HOM05D007474 ORTHO05D009367 4.4e-70 268.9 248 57.3
Cpa.g.sc95.3 Carica papaya HOM05D007474 ORTHO05D009367 9.8e-70 267.7 251 61.4
Carub.0007s1493 Capsella rubella HOM05D007474 ORTHO05D009367 1.3e-69 267.3 247 58.3
AT4G26020 Arabidopsis thaliana HOM05D007474 ORTHO05D009367 1.7e-69 266.9 247 58.7
Thhalv10027087m.g Eutrema salsugineum HOM05D007474 ORTHO05D009367 2.2e-69 266.5 247 57.9
Sp7g24050 Schrenkiella parvula HOM05D007474 ORTHO05D009367 3.7e-69 265.8 247 58.7
CANSAT56G2223 Cannabis sativa HOM05D007474 ORTHO05D009367 4.9e-69 265.4 250 59.2
A03p56400 Brassica napus HOM05D007474 ORTHO05D009367 1.8e-68 263.5 247 57.9
AL7G26960 Arabidopsis lyrata HOM05D007474 ORTHO05D009367 9.2e-68 261.2 247 57.9
QL04p010614 Quercus lobata HOM05D007474 ORTHO05D009367 9.2e-68 261.2 252 60.3
C07p54630 Brassica napus HOM05D007474 ORTHO05D009367 1.2e-67 260.8 247 57.1
Sabra18G0115300 Salix brachista HOM05D007474 ORTHO05D009367 5.9e-67 258.5 195 71.3
CARHR233540 Cardamine hirsuta HOM05D007474 ORTHO05D009367 2.9e-66 256.1 247 56.7
Lsat_1_v5_gn_7_55841 Lactuca sativa HOM05D007474 ORTHO05D009367 5.0e-66 255.4 246 56.1
HanXRQChr03g0065461 Helianthus annuus HOM05D007474 ORTHO05D009367 8.6e-66 254.6 251 55.4
Aqoxy7G02873 Aquilegia oxysepala HOM05D007474 ORTHO05D009367 1.6e-64 250.4 274 52.2
BolC7t45951H Brassica oleracea HOM05D007474 ORTHO05D009367 2.8e-64 249.6 265 53.2
PSO063G0774 Papaver somniferum HOM05D007474 ORTHO05D009367 2.8e-64 249.6 245 55.9
arahy.Tifrunner.gnm1.ann1.0S7KVV Arachis hypogaea HOM05D007474 ORTHO05D009367 3.6e-64 249.2 249 53.8
Gohir.D02G012700 Gossypium hirsutum HOM05D007474 ORTHO05D009367 3.6e-64 249.2 248 58.9
Cc06_g17460 Coffea canephora HOM05D007474 ORTHO05D009367 1.0e-63 247.7 237 57.8
ECA240G4744 Erigeron canadensis HOM05D007474 ORTHO05D009367 2.3e-63 246.5 243 54.3
arahy.Tifrunner.gnm1.ann1.FGVY1L Arachis hypogaea HOM05D007474 ORTHO05D009367 1.5e-62 243.8 249 53.0
Gorai.005G016200 Gossypium raimondii HOM05D007474 ORTHO05D009367 2.0e-62 243.4 253 57.7
Aa31LG3G380 Aethionema arabicum HOM05D007474 ORTHO05D009367 8.3e-61 238.0 251 55.0
Hma1.2p1_0235F.1_g098730 Hydrangea macrophylla HOM05D007474 ORTHO05D009367 7.0e-60 235.0 214 59.3
Nitab4.5_0011174g0010 Nicotiana tabacum HOM05D007474 ORTHO05D009367 7.0e-60 235.0 249 52.2
Peaxi162Scf00231g01013 Petunia axillaris HOM05D007474 ORTHO05D009367 2.7e-59 233.0 244 52.9
PSO170G3200 Papaver somniferum HOM05D007474 ORTHO05D009367 3.5e-59 232.6 295 47.1
PGR142G1289 Punica granatum HOM05D007474 ORTHO05D009367 5.9e-59 231.9 258 53.5
BcaC06g32774 Brassica carinata HOM05D007474 ORTHO05D009367 3.3e-57 226.1 247 51.8
CAN.G107.39 Capsicum annuum HOM05D007474 ORTHO05D009367 3.3e-57 226.1 240 51.2
Sc11g0007970 Simmondsia chinensis HOM05D007474 ORTHO05D009367 8.3e-53 211.5 249 48.6
PGR142G0563 Punica granatum HOM05D007474 ORTHO05D009367 1.9e-52 210.3 262 51.1
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 3.2e-52 209.5 233 51.5
BraA03t14710Z Brassica rapa HOM05D007474 ORTHO05D009367 7.8e-51 204.9 258 46.9
MBI16_g28190_MAGBIO Magnolia biondii HOM05D007474 ORTHO05D009367 7.8e-51 204.9 202 54.0
COL.COLO4_06926 Corchorus olitorius HOM05D007474 ORTHO05D009367 9.5e-49 198.0 201 57.2
Zm00001eb232320 Zea mays HOM05D007474 ORTHO05D009367 6.2e-48 195.3 247 44.1
Potri.018G141166 Populus trichocarpa HOM05D007474 ORTHO05D009367 3.1e-47 193.0 145 73.1
Nitab4.5_0000056g0090 Nicotiana tabacum HOM05D007474 ORTHO05D009367 1.3e-45 187.6 276 43.1
Oeu044666.1 Olea europaea HOM05D007474 ORTHO05D009367 1.1e-44 184.5 198 54.0
EL10Ac2g04755 Beta vulgaris HOM05D007474 ORTHO05D009367 9.2e-44 181.4 251 44.2
AUR62012086 Chenopodium quinoa HOM05D007474 ORTHO05D009367 3.5e-43 179.5 251 43.0
Os02g0148600 Oryza sativa ssp. japonica HOM05D007474 ORTHO05D009367 1.3e-42 177.6 249 41.8
AUR62039378 Chenopodium quinoa HOM05D007474 ORTHO05D009367 1.9e-41 173.7 251 43.0
Eucgr.C00103 Eucalyptus grandis HOM05D007474 ORTHO05D009367 4.0e-39 166.0 145 61.4
CSS0031812 Camellia sinensis var. sinensis HOM05D007474 ORTHO05D009367 1.3e-37 161.0 151 56.3
Potri.018G141232 Populus trichocarpa HOM05D007474 ORTHO05D009367 2.9e-37 159.8 126 67.5
AUR62039384 Chenopodium quinoa HOM05D007474 ORTHO05D009367 4.9e-37 159.1 235 42.1
Ah.09g225720 Amaranthus hybridus HOM05D007474 ORTHO05D009367 1.9e-36 157.1 251 38.6
vmacro20808 Vaccinium macrocarpon HOM05D007474 ORTHO05D009367 7.1e-36 155.2 147 56.5
Hma1.2p1_0140F.1_g063730 Hydrangea macrophylla HOM05D007474 ORTHO05D009367 5.2e-31 139.0 119 61.3
PGR142G3816 Punica granatum HOM05D007474 ORTHO05D009367 1.5e-30 137.5 121 62.8
Ca_02115_v3 Cicer arietinum L. HOM05D007474 ORTHO05D009367 5.1e-26 122.5 126 50.0
Hund13756 Selenicereus undatus HOM05D007474 ORTHO05D009367 7.6e-22 108.6 134 44.8
Actinidia07550 Actinidia chinensis HOM05D007474 ORTHO05D009367 4.2e-20 102.8 78 62.8
Lj4A313T24 Lonicera japonica HOM05D007474 ORTHO05D009367 7.9e-19 98.6 97 57.7
QL04p011351 Quercus lobata HOM05D000009 ORTHO05D000008 5.1e-18 95.9 102 55.9
TWI63G1298 Tripterygium wilfordii HOM05D007474 ORTHO05D009367 2.8e-16 90.1 108 47.2
AUR62004543 Chenopodium quinoa HOM05D007474 ORTHO05D009367 3.6e-16 89.7 169 36.7
SMO364G0168 Selaginella moellendorffii HOM05D007474 ORTHO05D009367 8.1e-16 88.6 245 28.2
Mapoly0011s0196 Marchantia polymorpha HOM05D007474 ORTHO05D009367 9.0e-15 85.1 262 26.0
Lju170C0T1 Lonicera japonica HOM05D007424 ORTHO05D009367 1.7e-13 80.9 98 50.0
arahy.Tifrunner.gnm1.ann1.245C1J Arachis hypogaea HOM05D007474 ORTHO05D009367 1.4e-12 77.8 65 58.5
arahy.Tifrunner.gnm1.ann1.TVY351 Arachis hypogaea HOM05D007474 ORTHO05D009367 9.3e-12 75.1 61 60.7
vmacro20809 Vaccinium macrocarpon HOM05D007474 ORTHO05D009367 4.6e-11 72.8 55 65.5
Actinidia07549 Actinidia chinensis HOM05D007474 ORTHO05D009367 6.2e-08 62.4 47 63.8
arahy.Tifrunner.gnm1.ann1.J5XFRX Arachis hypogaea HOM05D011742 ORTHO05D014450 4.0e-07 59.7 55 49.1


User provided reference genes

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