Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G078100 Manihot esculenta HOM05D008015 ORTHO05D009180 1.1e-97 360.1 203 100.0
Potri.004G085100 Populus trichocarpa HOM05D008015 ORTHO05D009180 2.1e-37 159.8 183 54.6
Ciclev10012847m.g Citrus clementina HOM05D008015 ORTHO05D009180 2.9e-34 149.4 198 47.5
Potri.017G131300 Populus trichocarpa HOM05D008015 ORTHO05D009180 6.0e-32 141.7 178 48.3
Sabra17G0109400 Salix brachista HOM05D008015 ORTHO05D009180 5.1e-31 138.7 184 48.4
Cfa007792 Carpinus fangiana HOM05D008015 ORTHO05D009180 5.9e-27 125.2 212 45.8
QL02p059324 Quercus lobata HOM05D008015 ORTHO05D009180 1.1e-25 120.9 197 44.2
TAR371G1005 Trochodendron aralioides HOM05D008015 ORTHO05D009180 3.5e-24 115.9 190 42.6
Nn4g24386 Nelumbo nucifera HOM05D008015 ORTHO05D009180 3.9e-23 112.5 191 41.9
Duzib268G1603 Durio zibethinus HOM05D008015 ORTHO05D009180 5.1e-23 112.1 189 43.4
CiPaw.03G073500 Carya illinoinensis HOM05D008015 ORTHO05D009180 6.7e-23 111.7 208 48.1
Cpa.g.sc340.4 Carica papaya HOM05D008015 ORTHO05D009180 1.6e-21 107.1 202 41.1
TAR629G2519 Trochodendron aralioides HOM05D008015 ORTHO05D009180 1.6e-21 107.1 201 44.3
Thecc.04G053900 Theobroma cacao HOM05D008015 ORTHO05D009180 1.1e-20 104.4 185 42.7
Medtr3g065210 Medicago truncatula HOM05D008015 ORTHO05D009180 9.0e-20 101.3 155 41.3
Lalb_Chr15g0084981 Lupinus albus HOM05D008015 ORTHO05D009180 2.0e-19 100.1 155 41.9
TWI77G0273 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 2.6e-19 99.8 208 45.2
LjContig00141g0001505 Lotus japonicus HOM05D008015 ORTHO05D009180 1.0e-18 97.8 156 39.7
Lalb_Chr18g0053531 Lupinus albus HOM05D008015 ORTHO05D009180 1.0e-18 97.8 156 42.9
Oeu032314.1 Olea europaea HOM05D008015 ORTHO05D009180 2.9e-18 96.3 167 40.1
MSTRG.3702 Avicennia marina HOM05D008015 ORTHO05D009180 8.5e-18 94.7 186 38.7
CSS0009801 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 8.5e-18 94.7 157 41.4
CSS0018355 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 8.5e-18 94.7 157 41.4
Sed0025761 Sechium edule HOM05D008015 ORTHO05D009180 8.5e-18 94.7 173 37.6
VMungo0647G1978 Vigna mungo HOM05D008015 ORTHO05D009180 1.4e-17 94.0 174 40.2
Glyma.14G213100 Glycine max HOM05D008015 ORTHO05D009180 3.2e-17 92.8 161 39.1
Nn3g18370 Nelumbo nucifera HOM05D008015 ORTHO05D009180 9.4e-17 91.3 123 48.8
Glyma.18G041300 Glycine max HOM05D008015 ORTHO05D009180 2.7e-16 89.7 116 50.0
TPR.G30001 Trifolium pratense HOM05D008015 ORTHO05D009180 3.6e-16 89.4 150 41.3
MD09G1270500 Malus domestica HOM05D008015 ORTHO05D009180 7.9e-16 88.2 214 33.2
Psat2g045760 Pisum sativum HOM05D008015 ORTHO05D009180 7.9e-16 88.2 158 50.0
Gohir.A07G073500 Gossypium hirsutum HOM05D008015 ORTHO05D009180 1.0e-15 87.8 151 44.4
TWI74G1025 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 1.0e-15 87.8 168 40.5
Actinidia35723 Actinidia chinensis HOM05D008015 ORTHO05D009180 1.4e-15 87.4 157 37.6
Eucgr.F02874 Eucalyptus grandis HOM05D008015 ORTHO05D009180 1.4e-15 87.4 200 42.0
MBI13_g45895_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 1.8e-15 87.0 183 35.5
Medtr5g077940 Medicago truncatula HOM05D008015 ORTHO05D009180 1.8e-15 87.0 173 39.3
Gohir.D07G078200 Gossypium hirsutum HOM05D008015 ORTHO05D009180 2.3e-15 86.7 151 47.0
Gorai.001G082600 Gossypium raimondii HOM05D008015 ORTHO05D009180 2.3e-15 86.7 151 47.0
SalBow5G5173 Salvia bowleyana HOM05D008015 ORTHO05D009180 2.3e-15 86.7 146 40.4
ClCG03G008850 Citrullus lanatus HOM05D008015 ORTHO05D009180 5.1e-15 85.5 114 48.2
RcHm_v2.0_Chr3g0491241 Rosa chinensis HOM05D008015 ORTHO05D009180 8.8e-15 84.7 235 33.2
MELO3C022825.2 Cucumis melo HOM05D008015 ORTHO05D009180 1.1e-14 84.3 114 45.6
FAN23G1273 Fragaria x ananassa HOM05D008015 ORTHO05D009180 1.5e-14 84.0 236 34.3
MBI19_g08383_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 2.5e-14 83.2 155 37.4
FAN26G1918 Fragaria x ananassa HOM05D008015 ORTHO05D009180 3.3e-14 82.8 236 34.3
CANSAT35G1526 Cannabis sativa HOM05D008015 ORTHO05D009180 4.3e-14 82.4 165 34.5
Prupe.3G166400 Prunus persica HOM05D008015 ORTHO05D009180 4.3e-14 82.4 108 45.4
Cc07_g13270 Coffea canephora HOM05D008015 ORTHO05D009180 9.7e-14 81.3 181 33.1
MBI13_g14024_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 9.7e-14 81.3 183 34.4
Lalb_Chr17g0346041 Lupinus albus HOM05D008015 ORTHO05D009180 1.3e-13 80.9 111 43.2
PSO478G3758 Papaver somniferum HOM05D008015 ORTHO05D009180 1.3e-13 80.9 101 51.5
CsaV3_5G023910 Cucumis sativus L. HOM05D009275 ORTHO05D009180 2.8e-13 79.7 156 37.8
VMungo1383G2632 Vigna mungo HOM05D008015 ORTHO05D009180 8.2e-13 78.2 110 47.3
Phvul.001G229400 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 1.1e-12 77.8 96 52.1
CDE05G1037 Ceratophyllum demersum HOM05D008015 ORTHO05D009180 1.4e-12 77.4 163 35.6
Actinidia28799 Actinidia chinensis HOM05D008015 ORTHO05D009180 1.8e-12 77.0 157 33.1
DCAR_014163 Daucus carota HOM05D008015 ORTHO05D009180 1.8e-12 77.0 115 43.5
Thhalv10027910m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 2.4e-12 76.6 180 37.2
FvH4_1g30203 Fragaria vesca HOM05D008015 ORTHO05D009180 5.3e-12 75.5 107 43.9
Aqoxy1G02179 Aquilegia oxysepala HOM05D008015 ORTHO05D009180 6.9e-12 75.1 101 46.5
ATR0753G067 Amborella trichopoda HOM05D008015 ORTHO05D009180 9.1e-12 74.7 115 40.9
COL.COLO4_13422 Corchorus olitorius HOM05D009275 ORTHO05D009180 1.5e-11 73.9 101 50.5
Sp7g04570 Schrenkiella parvula HOM05D009275 ORTHO05D009180 1.5e-11 73.9 96 54.2
BcaB06g27100 Brassica carinata HOM05D009275 ORTHO05D009180 3.4e-11 72.8 178 37.1
CARHR292200 Cardamine hirsuta HOM05D009275 ORTHO05D009180 4.5e-11 72.4 135 40.0
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 4.5e-11 72.4 117 41.9
Phvul.008G237600 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 4.5e-11 72.4 158 37.3
AL7G46310 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 2.2e-10 70.1 181 34.8
A04p10720 Brassica napus HOM05D009275 ORTHO05D009180 2.2e-10 70.1 174 37.9
Rhsim10G0178500 Rhododendron simsii HOM05D008015 ORTHO05D009180 2.9e-10 69.7 105 46.7
BraA04t16736Z Brassica rapa HOM05D009275 ORTHO05D009180 3.8e-10 69.3 174 37.9
Dinv28182 Davidia involucrata HOM05D008015 ORTHO05D009180 5.0e-10 68.9 65 61.5
PGR004G2766 Punica granatum HOM05D009275 ORTHO05D009180 8.5e-10 68.2 66 47.0
BcaC02g09585 Brassica carinata HOM05D009275 ORTHO05D009180 2.5e-09 66.6 95 50.5
C04p44430 Brassica napus HOM05D009275 ORTHO05D009180 2.5e-09 66.6 95 50.5
BolC4t26014H Brassica oleracea HOM05D009275 ORTHO05D009180 2.5e-09 66.6 95 50.5
CARHR215350 Cardamine hirsuta HOM05D009275 ORTHO05D009180 2.5e-09 66.6 162 35.8
SGA_v2.0_scaffold45G17152 Striga asiatica HOM05D008015 ORTHO05D009180 2.5e-09 66.6 110 40.0
arahy.Tifrunner.gnm1.ann1.NRE7W4 Arachis hypogaea HOM05D009275 ORTHO05D009180 5.5e-09 65.5 170 44.7
Carub.0007s3272 Capsella rubella HOM05D009275 ORTHO05D009180 5.5e-09 65.5 162 35.2
Sp5g21250 Schrenkiella parvula HOM05D009275 ORTHO05D009180 5.5e-09 65.5 183 35.0
MBI13_g24899_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 7.2e-09 65.1 64 53.1
Thhalv10019019m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 9.4e-09 64.7 119 42.0
FAN19G3187 Fragaria x ananassa HOM05D008015 ORTHO05D009180 9.4e-09 64.7 212 33.5
Aa31LG2G2900 Aethionema arabicum HOM05D009275 ORTHO05D009180 1.6e-08 63.9 125 40.8
Glyma.11G215300 Glycine max HOM05D008015 ORTHO05D009180 3.6e-08 62.8 113 41.6
AT5G37550 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 4.7e-08 62.4 94 50.0
arahy.Tifrunner.gnm1.ann1.I66ZQ3 Arachis hypogaea HOM05D009275 ORTHO05D009180 6.1e-08 62.0 160 44.4
Lsat_1_v5_gn_8_114880 Lactuca sativa HOM05D008015 ORTHO05D009180 6.1e-08 62.0 157 38.9
Aa31LG9G17500 Aethionema arabicum HOM05D009275 ORTHO05D009180 1.8e-07 60.5 186 32.8
BcaB05g24157 Brassica carinata HOM05D009275 ORTHO05D009180 2.3e-07 60.1 122 41.8
BraA02t06410Z Brassica rapa HOM05D009275 ORTHO05D009180 3.0e-07 59.7 123 39.8
A02p13520 Brassica napus HOM05D009275 ORTHO05D009180 5.1e-07 58.9 104 43.3
BcaC03g14735 Brassica carinata HOM05D009275 ORTHO05D009180 8.8e-07 58.2 123 39.8
C02p21840 Brassica napus HOM05D009275 ORTHO05D009180 8.8e-07 58.2 123 39.8
BolC2t08316H Brassica oleracea HOM05D009275 ORTHO05D009180 8.8e-07 58.2 123 39.8
Carub.0002s1218 Capsella rubella HOM05D009275 ORTHO05D009180 2.6e-06 56.6 196 33.2
AL2G23880 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 5.7e-06 55.5 121 38.0
AT1G66190 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 7.4e-06 55.1 102 42.2


User provided reference genes

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