Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G074901 Manihot esculenta HOM05D000439 ORTHO05D006172 1.5e-92 342.8 176 100.0
Manes.03G178500 Manihot esculenta HOM05D000439 ORTHO05D006172 3.7e-78 295.0 175 88.6
Manes.15G029200 Manihot esculenta HOM05D000439 ORTHO05D006172 2.2e-70 269.2 177 80.2
Potri.008G153000 Populus trichocarpa HOM05D000439 ORTHO05D006172 1.8e-64 249.6 177 74.0
Sabra08G0116600 Salix brachista HOM05D000439 ORTHO05D006172 7.5e-63 244.2 177 72.3
TWI73G0578 Tripterygium wilfordii HOM05D000439 ORTHO05D006172 1.3e-62 243.4 178 71.3
Cpa.g.sc58.106 Carica papaya HOM05D000439 ORTHO05D006172 6.3e-62 241.1 178 71.3
TWI53G0069 Tripterygium wilfordii HOM05D000439 ORTHO05D006172 9.2e-61 237.3 178 70.2
TWI09G0034 Tripterygium wilfordii HOM05D000439 ORTHO05D006172 2.9e-59 232.3 178 69.1
Duzib052G0960 Durio zibethinus HOM05D000439 ORTHO05D006172 3.0e-56 222.2 177 65.0
Duzib212G0312 Durio zibethinus HOM05D000439 ORTHO05D006172 1.2e-55 220.3 177 65.5
Gorai.006G239300 Gossypium raimondii HOM05D000439 ORTHO05D006172 9.8e-55 217.2 177 64.4
Gohir.A09G215900 Gossypium hirsutum HOM05D000439 ORTHO05D006172 2.2e-54 216.1 177 64.4
Atru.chr4.2461 Acer truncatum HOM05D000439 ORTHO05D006172 2.9e-54 215.7 180 63.9
Cfa015646 Carpinus fangiana HOM05D000439 ORTHO05D006172 2.9e-54 215.7 177 65.5
Ciclev10004753m.g Citrus clementina HOM05D000439 ORTHO05D006172 3.7e-54 215.3 176 64.2
Gohir.D09G218300 Gossypium hirsutum HOM05D000439 ORTHO05D006172 3.7e-54 215.3 177 63.8
Haze_00899 Corylus avellana HOM05D000439 ORTHO05D006172 6.4e-54 214.5 177 65.5
ClCG06G006240 Citrullus lanatus HOM05D000439 ORTHO05D006172 9.2e-53 210.7 175 64.0
CsaV3_7G022490 Cucumis sativus L. HOM05D000439 ORTHO05D006172 9.2e-53 210.7 175 64.0
Sed0018003 Sechium edule HOM05D000439 ORTHO05D006172 1.2e-52 210.3 175 64.6
QL06p002460 Quercus lobata HOM05D000439 ORTHO05D006172 2.7e-52 209.1 177 62.7
THA.LOC104809078 Tarenaya hassleriana HOM05D000439 ORTHO05D006172 2.7e-52 209.1 181 64.6
CiPaw.01G166100 Carya illinoinensis HOM05D000439 ORTHO05D006172 4.6e-52 208.4 177 63.3
CANSAT78G0526 Cannabis sativa HOM05D000439 ORTHO05D006172 5.9e-52 208.0 176 63.1
Prupe.1G013700 Prunus persica HOM05D000439 ORTHO05D006172 5.9e-52 208.0 177 65.0
MELO3C012651.2 Cucumis melo HOM05D000439 ORTHO05D006172 7.8e-52 207.6 175 63.4
COL.COLO4_21479 Corchorus olitorius HOM05D000439 ORTHO05D006172 1.0e-51 207.2 182 62.6
MD16G1194000 Malus domestica HOM05D000439 ORTHO05D006172 1.9e-50 203.0 177 63.8
Gohir.A02G032200 Gossypium hirsutum HOM05D000439 ORTHO05D006172 2.5e-50 202.6 175 59.4
THA.LOC104803025 Tarenaya hassleriana HOM05D000439 ORTHO05D006172 2.5e-50 202.6 181 61.9
PGR004G1056 Punica granatum HOM05D000439 ORTHO05D006172 3.3e-50 202.2 181 62.4
Thhalv10020440m.g Eutrema salsugineum HOM05D000439 ORTHO05D006172 4.3e-50 201.8 182 61.5
MD13G1193100 Malus domestica HOM05D000439 ORTHO05D006172 4.3e-50 201.8 177 62.7
Gorai.005G042900 Gossypium raimondii HOM05D000439 ORTHO05D006172 5.6e-50 201.4 175 58.3
THA.LOC104822271 Tarenaya hassleriana HOM05D000439 ORTHO05D006172 5.6e-50 201.4 181 61.3
Dinv13996 Davidia involucrata HOM05D000439 ORTHO05D006172 1.4e-48 196.8 177 62.1
RcHm_v2.0_Chr4g0416211 Rosa chinensis HOM05D000439 ORTHO05D006172 4.0e-48 195.3 177 60.5
Sp3g20210 Schrenkiella parvula HOM05D000439 ORTHO05D006172 4.0e-48 195.3 181 59.7
Sp7g13040 Schrenkiella parvula HOM05D000439 ORTHO05D006172 4.0e-48 195.3 183 58.5
FAN22G2148 Fragaria x ananassa HOM05D000439 ORTHO05D006172 5.2e-48 194.9 180 61.1
Thecc.04G232100 Theobroma cacao HOM05D000439 ORTHO05D006172 5.2e-48 194.9 177 59.3
Aa31LG8G9010 Aethionema arabicum HOM05D000439 ORTHO05D006172 6.8e-48 194.5 182 59.9
FAN07G0650 Fragaria x ananassa HOM05D000439 ORTHO05D006172 1.2e-47 193.7 180 60.6
FAN17G2341 Fragaria x ananassa HOM05D000439 ORTHO05D006172 1.5e-47 193.4 180 60.6
FvH4_4g15550 Fragaria vesca HOM05D000439 ORTHO05D006172 2.0e-47 193.0 180 60.6
FAN12G2572 Fragaria x ananassa HOM05D000439 ORTHO05D006172 2.0e-47 193.0 180 60.6
Hund12129 Selenicereus undatus HOM05D000439 ORTHO05D006172 2.0e-47 193.0 177 59.3
AL3G36750 Arabidopsis lyrata HOM05D000439 ORTHO05D006172 2.6e-47 192.6 182 58.8
Lj5g0001183 Lotus japonicus HOM05D000439 ORTHO05D006172 4.4e-47 191.8 179 59.8
AT3G22440 Arabidopsis thaliana HOM05D000439 ORTHO05D006172 7.5e-47 191.0 183 57.9
SHI00449 Sapria himalayana HOM05D000439 ORTHO05D006172 2.2e-46 189.5 179 57.5
Thhalv10024868m.g Eutrema salsugineum HOM05D000439 ORTHO05D006172 3.7e-46 188.7 181 60.2
Carub.0003s2262 Capsella rubella HOM05D000439 ORTHO05D006172 4.9e-46 188.3 184 57.1
CARHR221480 Cardamine hirsuta HOM05D000439 ORTHO05D006172 4.9e-46 188.3 183 56.3
Glyma.20G146100 Glycine max HOM05D000439 ORTHO05D006172 4.9e-46 188.3 178 58.4
CARHR098350 Cardamine hirsuta HOM05D000439 ORTHO05D006172 8.3e-46 187.6 188 56.9
BcaC09g49175 Brassica carinata HOM05D000439 ORTHO05D006172 1.1e-45 187.2 179 58.1
C01p41830 Brassica napus HOM05D000439 ORTHO05D006172 1.1e-45 187.2 179 58.1
BolC1t04137H Brassica oleracea HOM05D000439 ORTHO05D006172 1.1e-45 187.2 179 58.1
Medtr1g103710 Medicago truncatula HOM05D000439 ORTHO05D006172 1.4e-45 186.8 179 57.5
Phvul.007G057500 Phaseolus vulgaris HOM05D000439 ORTHO05D006172 2.4e-45 186.0 177 57.6
BcaB04g20517 Brassica carinata HOM05D000439 ORTHO05D006172 4.1e-45 185.3 179 57.5
TPR.G5544 Trifolium pratense HOM05D000439 ORTHO05D006172 7.0e-45 184.5 181 56.9
EL10As3g23288 Beta vulgaris HOM05D000439 ORTHO05D006172 9.2e-45 184.1 180 55.0
AUR62033634 Chenopodium quinoa HOM05D000439 ORTHO05D006172 9.2e-45 184.1 180 55.6
arahy.Tifrunner.gnm1.ann1.JR532J Arachis hypogaea HOM05D000439 ORTHO05D006172 1.6e-44 183.3 181 56.9
arahy.Tifrunner.gnm1.ann1.Y59G7X Arachis hypogaea HOM05D000439 ORTHO05D006172 1.6e-44 183.3 181 56.9
AL7G40950 Arabidopsis lyrata HOM05D000439 ORTHO05D006172 4.6e-44 181.8 179 56.4
AT4G14900 Arabidopsis thaliana HOM05D000439 ORTHO05D006172 6.0e-44 181.4 179 56.4
AUR62034747 Chenopodium quinoa HOM05D000439 ORTHO05D006172 1.3e-43 180.3 180 55.0
A01p32650 Brassica napus HOM05D000439 ORTHO05D006172 3.9e-43 178.7 181 56.9
Psat6g207360 Pisum sativum HOM05D000439 ORTHO05D006172 1.5e-42 176.8 181 55.2
TAR365G0584 Trochodendron aralioides HOM05D000439 ORTHO05D006172 1.5e-42 176.8 175 58.9
Ah.04g154630 Amaranthus hybridus HOM05D000439 ORTHO05D006172 1.9e-42 176.4 181 55.8
Lsat_1_v5_gn_9_80141 Lactuca sativa HOM05D000439 ORTHO05D006172 1.9e-42 176.4 177 55.9
TAR636G3313 Trochodendron aralioides HOM05D000439 ORTHO05D006172 4.3e-42 175.3 175 57.1
Peaxi162Scf00092g01013 Petunia axillaris HOM05D000439 ORTHO05D006172 5.6e-42 174.9 186 54.3
Nitab4.5_0004258g0030 Nicotiana tabacum HOM05D000439 ORTHO05D006172 9.5e-42 174.1 177 56.5
BraA01t03393Z Brassica rapa HOM05D000439 ORTHO05D006172 1.2e-41 173.7 181 54.7
CSS0012474 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D006172 2.1e-41 172.9 181 55.8
Sopen09g030890 Solanum pennellii HOM05D000439 ORTHO05D006172 2.1e-41 172.9 180 56.1
Aqoxy5G00467 Aquilegia oxysepala HOM05D000439 ORTHO05D006172 2.8e-41 172.6 175 57.1
Solyc09g076050.4 Solanum lycopersicum HOM05D000439 ORTHO05D006172 3.6e-41 172.2 180 56.1
Lsat_1_v5_gn_7_67240 Lactuca sativa HOM05D000439 ORTHO05D006172 6.2e-41 171.4 177 55.4
PGSC0003DMG400030083 Solanum tuberosum HOM05D000439 ORTHO05D006172 6.2e-41 171.4 180 55.6
HanXRQChr06g0181431 Helianthus annuus HOM05D000439 ORTHO05D006172 8.1e-41 171.0 179 53.1
Carub.0007s2721 Capsella rubella HOM05D000439 ORTHO05D006172 1.1e-40 170.6 185 54.1
Nitab4.5_0000043g0100 Nicotiana tabacum HOM05D000439 ORTHO05D006172 4.0e-40 168.7 177 55.4
Gohir.D02G038900 Gossypium hirsutum HOM05D000439 ORTHO05D006172 6.8e-40 167.9 175 50.9
PSO832G2628 Papaver somniferum HOM05D000439 ORTHO05D006172 1.5e-39 166.8 178 53.9
Hma1.2p1_0602F.1_g187340 Hydrangea macrophylla HOM05D000439 ORTHO05D006172 3.4e-39 165.6 183 51.4
Ca_10896_v3 Cicer arietinum L. HOM05D000439 ORTHO05D006172 1.3e-38 163.7 180 53.3
Lj3C734T11 Lonicera japonica HOM05D000439 ORTHO05D006172 1.3e-38 163.7 175 53.1
SGA_v2.0_scaffold550G52866 Striga asiatica HOM05D000439 ORTHO05D006172 1.3e-38 163.7 177 51.4
VMungo0720G0964 Vigna mungo HOM05D000439 ORTHO05D006172 1.7e-38 163.3 177 53.1
PSO210G3898 Papaver somniferum HOM05D000439 ORTHO05D006172 2.2e-38 162.9 176 53.4
Glyma.10G248000 Glycine max HOM05D000439 ORTHO05D006172 3.7e-38 162.2 181 53.0
Nn1g02321 Nelumbo nucifera HOM05D000439 ORTHO05D006172 4.9e-38 161.8 176 53.4
unitig_26.g10518 Utricularia gibba HOM05D000439 ORTHO05D006172 4.9e-38 161.8 180 51.1
MSTRG.24741 Avicennia marina HOM05D000439 ORTHO05D006172 5.4e-37 158.3 181 49.7
SGA_v2.0_scaffold166G38355 Striga asiatica HOM05D000439 ORTHO05D006172 7.1e-37 157.9 179 52.0
Migut.N00184 Erythranthe guttata HOM05D000439 ORTHO05D006172 4.6e-36 155.2 183 47.0
Oeu031230.1 Olea europaea HOM05D000439 ORTHO05D006172 6.0e-36 154.8 184 46.7
DCAR_027218 Daucus carota HOM05D000439 ORTHO05D006172 7.8e-36 154.5 175 49.1
Oeu050279.2 Olea europaea HOM05D000439 ORTHO05D006172 5.1e-35 151.8 189 45.5
CSS0007127 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D006172 1.9e-34 149.8 179 52.5
Sc25g0004360 Simmondsia chinensis HOM05D000439 ORTHO05D006172 4.3e-34 148.7 180 48.3
Rhsim02G0025300 Rhododendron simsii HOM05D000439 ORTHO05D006172 4.7e-33 145.2 186 47.3
Rhsim04G0202100 Rhododendron simsii HOM05D000439 ORTHO05D006172 2.4e-32 142.9 180 50.6
Sc19g0004140 Simmondsia chinensis HOM05D000439 ORTHO05D006172 1.7e-30 136.7 159 49.7
Actinidia23511 Actinidia chinensis HOM05D000439 ORTHO05D006172 1.1e-29 134.0 181 48.1
Lalb_Chr21g0304711 Lupinus albus HOM05D000439 ORTHO05D006172 1.1e-29 134.0 183 45.9
CAN.G490.11 Capsicum annuum HOM05D000439 ORTHO05D006172 2.4e-29 132.9 150 52.0
Actinidia40144 Actinidia chinensis HOM05D000439 ORTHO05D006172 3.2e-29 132.5 142 56.3
BcaC05g28068 Brassica carinata HOM05D000439 ORTHO05D006172 7.1e-29 131.3 156 51.3
C05p40900 Brassica napus HOM05D000439 ORTHO05D006172 7.1e-29 131.3 156 51.3
BolC5t32832H Brassica oleracea HOM05D000439 ORTHO05D006172 7.1e-29 131.3 156 51.3
Eucgr.H03480 Eucalyptus grandis HOM05D000439 ORTHO05D006172 4.6e-28 128.6 132 55.3
ECA240G1807 Erigeron canadensis HOM05D000439 ORTHO05D006172 5.1e-27 125.2 181 41.4
ECA240G1500 Erigeron canadensis HOM05D000439 ORTHO05D006172 6.6e-27 124.8 181 41.4
MBI11_g31279_MAGBIO Magnolia biondii HOM05D000439 ORTHO05D006172 6.6e-27 124.8 165 43.0
FAN05G3914 Fragaria x ananassa HOM05D000439 ORTHO05D006172 2.8e-25 119.4 126 54.0
FAN09G4271 Fragaria x ananassa HOM05D000643 ORTHO05D006172 3.6e-25 119.0 136 50.7
FAN12G1418 Fragaria x ananassa HOM05D000439 ORTHO05D006172 8.4e-22 107.8 124 52.4
Os03g0794900 Oryza sativa ssp. japonica HOM05D000439 ORTHO05D006172 2.4e-21 106.3 158 38.0
HPP92_012138 Vanilla planifolia HOM05D000439 ORTHO05D006172 1.7e-19 100.1 158 38.0
BraA05t21505Z Brassica rapa HOM05D000439 ORTHO05D006172 1.1e-18 97.4 113 50.4
TAR624G0363 Trochodendron aralioides HOM05D000439 ORTHO05D009874 7.3e-18 94.7 161 36.6
Nn2g11770 Nelumbo nucifera HOM05D000439 ORTHO05D009874 8.1e-17 91.3 161 35.4
CDE07G0898 Ceratophyllum demersum HOM05D000439 ORTHO05D006172 4.0e-16 89.0 155 38.7
TAR636G1267 Trochodendron aralioides HOM05D000439 ORTHO05D009874 6.9e-16 88.2 161 34.8
Nn4g26325 Nelumbo nucifera HOM05D000439 ORTHO05D006172 9.0e-16 87.8 98 53.1
CDE04G3570 Ceratophyllum demersum HOM05D000439 ORTHO05D006172 1.5e-15 87.0 155 36.8
Aqoxy7G03789 Aquilegia oxysepala HOM05D000439 ORTHO05D009874 2.0e-15 86.7 153 38.6
Oeu032713.2 Olea europaea HOM05D000439 ORTHO05D006172 2.6e-15 86.3 118 42.4
PSO063G1966 Papaver somniferum HOM05D000439 ORTHO05D009874 4.5e-15 85.5 160 33.8
CSS0019665 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D009874 2.9e-14 82.8 156 33.3
TWI34G1498 Tripterygium wilfordii HOM05D000439 ORTHO05D009874 8.4e-14 81.3 156 34.0
ATR1120G089 Amborella trichopoda HOM05D000439 ORTHO05D009874 1.1e-13 80.9 151 35.1
ATR0697G242 Amborella trichopoda HOM05D000439 ORTHO05D006172 2.4e-13 79.7 163 30.7
Eucgr.C01055 Eucalyptus grandis HOM05D000439 ORTHO05D009874 2.4e-13 79.7 152 33.6
Os07g0173200 Oryza sativa ssp. japonica HOM05D000439 ORTHO05D006172 1.2e-12 77.4 169 28.4
FAN10G0520 Fragaria x ananassa HOM05D000439 ORTHO05D006172 7.9e-12 74.7 89 46.1
Glyma.05G231700 Glycine max HOM05D000439 ORTHO05D009874 1.3e-11 73.9 156 32.1
Potri.018G078701 Populus trichocarpa HOM05D000439 ORTHO05D009874 3.0e-11 72.8 163 31.3
vmacro05352 Vaccinium macrocarpon HOM05D000439 ORTHO05D009874 3.0e-11 72.8 160 33.1
EL10Ac8g18511 Beta vulgaris HOM05D000439 ORTHO05D009874 8.7e-11 71.2 156 30.1
CDE07G1583 Ceratophyllum demersum HOM05D000439 ORTHO05D009874 1.1e-10 70.9 158 31.6
Zm00001eb117030 Zea mays HOM05D000439 ORTHO05D006172 1.5e-10 70.5 164 28.7
Haze_25703 Corylus avellana HOM05D000439 ORTHO05D009874 2.5e-10 69.7 160 30.6
Atru.chr7.1332 Acer truncatum HOM05D000439 ORTHO05D009874 5.6e-10 68.6 156 31.4
CDE06G2587 Ceratophyllum demersum HOM05D000439 ORTHO05D009874 1.6e-09 67.0 158 32.3
VMungo0251G2870 Vigna mungo HOM05D000439 ORTHO05D009874 2.1e-09 66.6 156 30.8
Zm00001eb301060 Zea mays HOM05D000439 ORTHO05D006172 2.8e-09 66.2 165 27.3
MBI04_g08933_MAGBIO Magnolia biondii HOM05D000439 ORTHO05D009874 4.8e-09 65.5 163 30.7
Sabra18G0066700 Salix brachista HOM05D000439 ORTHO05D009874 1.4e-08 63.9 163 30.1
Duzib187G1055 Durio zibethinus HOM05D000439 ORTHO05D009874 3.1e-08 62.8 159 28.9
Medtr8g083500 Medicago truncatula HOM05D000439 ORTHO05D009874 5.3e-08 62.0 156 28.8
Ciclev10007961m.g Citrus clementina HOM05D000439 ORTHO05D009874 9.0e-08 61.2 160 29.4
Hma1.2p1_0140F.1_g063700 Hydrangea macrophylla HOM05D000439 ORTHO05D009874 9.0e-08 61.2 161 28.0
Lsat_1_v5_gn_6_63921 Lactuca sativa HOM05D000439 ORTHO05D009874 2.0e-07 60.1 156 26.3
FAN16G2443 Fragaria x ananassa HOM05D000439 ORTHO05D006172 3.4e-07 59.3 53 60.4
Dinv14212 Davidia involucrata HOM05D000439 ORTHO05D009874 5.8e-07 58.5 115 31.3
Sc14g0000380 Simmondsia chinensis HOM05D000439 ORTHO05D009874 9.9e-07 57.8 159 23.9
arahy.Tifrunner.gnm1.ann1.SJT80M Arachis hypogaea HOM05D000439 ORTHO05D009874 1.7e-06 57.0 158 27.8
Hund09196 Selenicereus undatus HOM05D000439 ORTHO05D009874 6.4e-06 55.1 160 27.5
SEGI_28702 Sequoiadendron giganteum HOM05D000439 ORTHO05D006172 8.4e-06 54.7 161 24.8


User provided reference genes

Program Settings