Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 3.2e-163 578.6 289 100.0
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.9e-92 342.8 278 67.3
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 6.6e-92 341.7 296 64.2
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 1.2e-90 337.4 282 66.7
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 3.6e-90 335.9 292 63.0
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 8.0e-90 334.7 314 60.2
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 2.3e-89 333.2 289 63.3
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 3.0e-89 332.8 295 63.1
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 3.7e-87 325.9 291 62.2
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 8.3e-87 324.7 292 63.0
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.1e-86 324.3 287 63.4
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 2.4e-86 323.2 289 62.6
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 2.4e-86 323.2 280 64.3
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 9.2e-86 321.2 292 64.0
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 3.9e-84 315.8 319 58.0
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 3.9e-84 315.8 319 58.0
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 8.6e-84 314.7 285 62.5
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 1.1e-83 314.3 287 63.1
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 9.5e-83 311.2 290 62.1
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 1.2e-82 310.8 330 56.1
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 6.2e-82 308.5 284 60.6
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 1.4e-81 307.4 308 58.4
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.8e-81 307.0 289 62.6
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 3.1e-81 306.2 284 60.2
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.6e-80 303.1 284 59.5
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 2.2e-79 300.1 280 60.0
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 8.3e-79 298.1 290 59.7
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 1.2e-77 294.3 324 54.3
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 2.0e-77 293.5 299 59.9
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 7.8e-77 291.6 291 60.1
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 7.3e-75 285.0 307 57.0
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 8.9e-73 278.1 306 55.2
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 9.9e-72 274.6 233 63.9
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 9.9e-72 274.6 290 53.8
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 1.3e-71 274.2 301 55.5
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 4.9e-71 272.3 291 56.0
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 6.4e-71 271.9 285 57.2
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 6.4e-71 271.9 300 55.0
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 8.3e-71 271.6 275 58.2
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 1.9e-70 270.4 290 56.9
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 1.9e-70 270.4 293 55.3
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 2.4e-70 270.0 292 54.1
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 3.2e-70 269.6 294 55.8
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 9.2e-70 268.1 279 57.7
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 1.2e-69 267.7 301 55.8
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 2.1e-69 266.9 290 56.6
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 2.7e-69 266.5 290 55.2
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.7e-69 266.5 290 55.2
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.5e-69 266.2 290 55.5
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 4.6e-69 265.8 288 53.5
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 6.0e-69 265.4 289 54.3
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 1.3e-68 264.2 289 57.1
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.3e-68 263.5 290 54.8
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 2.3e-68 263.5 290 55.2
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 3.0e-68 263.1 295 53.9
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 5.1e-68 262.3 304 53.0
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 5.1e-68 262.3 302 54.0
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 5.1e-68 262.3 291 54.3
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 6.6e-68 261.9 305 54.4
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 1.1e-67 261.2 303 54.8
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.9e-67 260.4 290 54.5
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.5e-67 260.0 275 56.0
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 3.3e-67 259.6 294 53.7
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 5.6e-67 258.8 291 54.3
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 7.3e-67 258.5 286 56.3
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 1.6e-66 257.3 290 53.8
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 2.1e-66 256.9 307 53.4
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 3.6e-66 256.1 291 54.6
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 1.1e-65 254.6 294 52.4
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 1.8e-65 253.8 292 54.5
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 1.8e-65 253.8 292 54.5
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 1.8e-65 253.8 292 54.1
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 1.8e-65 253.8 292 55.1
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 1.8e-65 253.8 284 52.5
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 2.4e-65 253.4 283 55.8
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.4e-65 253.4 286 52.8
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 8.9e-65 251.5 294 52.7
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 8.9e-65 251.5 288 54.5
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 2.0e-64 250.4 254 59.1
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 2.6e-64 250.0 307 51.8
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 3.4e-64 249.6 308 51.3
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 4.4e-64 249.2 287 52.6
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 7.6e-64 248.4 309 52.1
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 2.2e-63 246.9 287 52.3
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 1.1e-62 244.6 283 53.4
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.4e-62 244.2 288 52.8
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 5.4e-62 242.3 286 53.8
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.7e-61 240.0 223 57.8
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 3.5e-61 239.6 295 50.5
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 3.5e-61 239.6 283 52.3
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 4.6e-61 239.2 281 52.3
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 6.0e-61 238.8 286 51.4
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 6.0e-61 238.8 276 54.3
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 1.7e-60 237.3 289 50.5
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 2.3e-60 236.9 217 58.1
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 2.3e-60 236.9 300 51.0
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 3.0e-60 236.5 290 50.3
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 3.0e-60 236.5 286 51.0
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 3.9e-60 236.1 285 50.5
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 3.9e-60 236.1 299 52.2
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 1.1e-59 234.6 291 50.9
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.1e-59 234.6 217 57.6
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 3.3e-59 233.0 296 51.7
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 5.6e-59 232.3 273 51.6
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 7.3e-59 231.9 293 51.5
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 7.3e-59 231.9 290 51.0
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 9.6e-59 231.5 291 50.9
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 9.6e-59 231.5 283 50.9
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 2.1e-58 230.3 292 51.4
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 2.1e-58 230.3 298 51.0
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 2.8e-58 229.9 284 49.6
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 3.6e-58 229.6 292 51.0
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 6.2e-58 228.8 290 50.0
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 1.8e-57 227.3 264 53.8
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 2.4e-57 226.9 303 49.2
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 2.4e-57 226.9 279 50.5
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 1.2e-56 224.6 283 50.5
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 3.4e-56 223.0 293 49.1
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 5.8e-56 222.2 301 49.8
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.3e-55 221.1 287 50.9
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.7e-55 220.7 284 47.2
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 4.9e-55 219.2 277 48.4
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 8.4e-55 218.4 295 48.1
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 8.4e-55 218.4 295 48.5
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.4e-54 217.6 295 50.2
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 2.4e-54 216.9 287 48.1
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.2e-53 214.5 169 68.0
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 6.6e-52 208.8 159 67.3
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 6.2e-50 202.2 205 58.5
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 4.0e-49 199.5 164 64.0
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 5.3e-49 199.1 275 47.6
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 2.9e-47 193.4 275 46.9
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 3.8e-47 193.0 261 48.7
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 4.9e-47 192.6 150 66.7
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 4.2e-46 189.5 173 60.7
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 2.1e-45 187.2 299 44.1
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 1.5e-43 181.0 286 44.8
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 4.3e-43 179.5 236 51.3
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.6e-42 177.6 162 58.6
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 1.6e-42 177.6 183 53.6
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 2.6e-40 170.2 278 42.4
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 9.3e-38 161.8 269 41.6
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 1.0e-36 158.3 126 61.9
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 3.0e-36 156.8 124 62.1
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 5.1e-36 156.0 289 40.1
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 1.1e-35 154.8 269 40.9
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 4.3e-35 152.9 236 44.9
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 3.4e-32 143.3 160 50.6
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 7.6e-32 142.1 159 50.9
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 8.7e-28 128.6 289 37.0
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 2.6e-24 117.1 134 42.5
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 7.2e-22 109.0 157 45.2
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 1.0e-20 105.1 80 65.0
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 1.9e-19 100.9 111 49.5
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 3.4e-16 90.1 155 42.6
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 4.5e-16 89.7 175 37.7
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.2e-15 87.4 100 56.0
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 8.5e-15 85.5 134 45.5
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 3.2e-14 83.6 57 64.9
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 4.2e-14 83.2 128 47.7
SEGI_05570 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 4.8e-10 69.7 94 50.0
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 8.2e-10 68.9 73 58.9


User provided reference genes

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