Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 2.2e-106 389.0 205 100.0
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 2.4e-76 289.3 206 76.2
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 2.1e-72 276.2 207 72.5
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 2.1e-72 276.2 207 72.5
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 9.0e-68 260.8 209 70.8
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 3.4e-67 258.8 202 73.3
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 1.7e-66 256.5 231 65.8
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 1.4e-65 253.4 211 69.7
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 4.2e-65 251.9 211 69.2
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 7.1e-65 251.1 231 64.5
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 9.3e-65 250.8 211 70.6
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 2.7e-64 249.2 211 70.6
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 1.1e-62 243.8 215 64.2
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 1.5e-62 243.4 212 66.0
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 2.5e-62 242.7 210 67.6
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 4.8e-61 238.4 213 64.3
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 2.4e-60 236.1 210 65.7
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 3.1e-60 235.7 210 66.7
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 5.3e-60 235.0 214 66.8
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 6.5e-58 228.0 210 67.1
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 2.5e-57 226.1 210 65.7
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 1.5e-54 216.9 218 64.2
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 2.5e-54 216.1 230 62.6
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.3e-53 213.8 209 62.2
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 6.3e-53 211.5 203 64.0
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 8.2e-53 211.1 208 62.0
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.4e-52 209.5 194 64.4
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 8.5e-50 201.1 211 57.8
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 1.6e-48 196.8 222 56.3
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 1.0e-47 194.1 216 56.9
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 3.0e-47 192.6 220 56.4
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 5.1e-47 191.8 220 56.8
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 5.1e-47 191.8 208 57.2
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 6.7e-47 191.4 211 60.2
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 2.6e-46 189.5 221 54.3
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 4.4e-46 188.7 216 57.9
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 8.2e-45 184.5 230 54.3
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 1.8e-44 183.3 186 64.5
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 2.4e-44 183.0 220 55.0
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 4.1e-44 182.2 225 54.7
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 4.5e-43 178.7 202 56.4
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.5e-43 178.7 170 62.4
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.3e-42 177.2 170 61.8
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 1.7e-42 176.8 218 54.1
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 2.9e-42 176.0 204 56.9
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 1.9e-41 173.3 223 57.0
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.6e-40 170.2 217 58.1
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 2.1e-40 169.9 211 53.6
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.6e-40 169.1 220 57.3
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.6e-40 169.1 170 60.0
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 3.6e-40 169.1 114 76.3
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 6.1e-40 168.3 203 52.2
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 1.4e-39 167.2 218 52.3
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 1.8e-39 166.8 211 52.6
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 1.8e-39 166.8 204 54.9
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 2.3e-39 166.4 180 59.4
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 5.2e-39 165.2 220 51.4
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 2.6e-38 162.9 224 56.2
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 2.6e-38 162.9 224 56.2
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 3.3e-38 162.5 210 55.7
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 7.4e-38 161.4 182 54.9
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 1.7e-37 160.2 212 52.8
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 1.7e-37 160.2 218 50.5
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 8.2e-37 157.9 226 54.9
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 1.8e-36 156.8 173 54.3
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.1e-36 155.6 192 53.1
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 3.5e-35 152.5 192 52.6
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 5.9e-35 151.8 223 50.2
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 7.7e-35 151.4 177 59.3
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 7.7e-35 151.4 177 56.5
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 1.0e-34 151.0 232 49.6
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 2.9e-34 149.4 192 53.6
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 6.5e-34 148.3 209 51.7
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 8.5e-34 147.9 222 54.5
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 8.5e-34 147.9 192 55.7
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 8.5e-34 147.9 191 55.5
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 2.5e-33 146.4 181 55.2
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 4.2e-33 145.6 236 45.8
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 4.2e-33 145.6 225 47.1
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 9.4e-33 144.4 225 50.7
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 1.2e-32 144.1 230 49.1
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 2.3e-31 139.8 243 43.2
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 8.8e-31 137.9 158 56.3
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 3.3e-30 136.0 234 44.4
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 3.3e-30 136.0 242 44.6
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 4.4e-30 135.6 238 43.7
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 2.2e-29 133.3 234 43.6
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 3.7e-29 132.5 211 45.5
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 6.3e-29 131.7 237 43.5
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 6.3e-29 131.7 237 43.5
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 1.4e-28 130.6 237 43.0
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.4e-28 130.6 167 54.5
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 1.8e-28 130.2 236 43.2
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 2.4e-28 129.8 192 47.4
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 3.1e-28 129.4 241 41.9
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 9.1e-28 127.9 183 50.3
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 5.9e-27 125.2 213 44.6
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.0e-26 124.4 265 38.5
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 1.3e-26 124.0 252 41.3
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 2.2e-26 123.2 261 40.6
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 2.9e-26 122.9 181 49.7
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 3.8e-26 122.5 242 41.3
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 1.9e-25 120.2 253 41.5
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 2.5e-25 119.8 171 52.0
TPR.G32442 Trifolium pratense HOM05D004795 ORTHO05D005518 5.5e-25 118.6 333 33.9
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 2.1e-24 116.7 245 41.2
Psat1g081000 Pisum sativum HOM05D004795 ORTHO05D005518 2.1e-24 116.7 276 35.5
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 3.6e-24 115.9 260 39.6
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 4.7e-24 115.5 259 39.0
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 8.0e-24 114.8 177 47.5
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 5.2e-23 112.1 174 47.1
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 8.8e-23 111.3 230 42.2
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 8.8e-23 111.3 219 42.5
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 1.5e-22 110.5 235 41.7
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 1.5e-22 110.5 179 45.8
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 5.7e-22 108.6 222 41.0
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 1.3e-21 107.5 228 42.5
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 1.3e-21 107.5 245 38.0
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 2.2e-21 106.7 228 42.1
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 2.2e-21 106.7 251 39.0
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 2.8e-21 106.3 269 37.2
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 1.1e-20 104.4 216 41.2
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 1.1e-20 104.4 196 44.9
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 1.1e-20 104.4 127 50.4
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 3.1e-20 102.8 229 41.0
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 3.1e-20 102.8 122 54.1
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 5.4e-20 102.1 132 54.5
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 7.0e-20 101.7 170 43.5
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 9.1e-20 101.3 194 43.8
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 1.6e-19 100.5 101 62.4
Gohir.D11G325975 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.0e-19 100.1 85 64.7
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 3.8e-18 95.9 200 41.0
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 6.5e-18 95.1 327 32.4
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 5.5e-17 92.0 307 32.2
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 2.8e-16 89.7 203 36.0
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 6.1e-16 88.6 233 38.6
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 1.0e-15 87.8 231 39.0
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 9.8e-14 81.3 136 42.6
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 3.7e-13 79.3 202 39.1
CAN.G358.61 Capsicum annuum HOM05D004795 ORTHO05D005518 2.4e-12 76.6 84 53.6
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 2.4e-12 76.6 152 38.2
Gohir.A07G174000 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.1e-12 76.3 95 50.5
Actinidia15890 Actinidia chinensis HOM05D004795 ORTHO05D005518 4.1e-12 75.9 83 56.6
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 5.4e-12 75.5 140 39.3
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 3.5e-11 72.8 165 37.6
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 3.8e-10 69.3 150 35.3
ATR0752G028 Amborella trichopoda HOM05D004795 ORTHO05D005518 2.5e-09 66.6 155 38.1
SalBow7G1622 Salvia bowleyana HOM05D004795 ORTHO05D005518 4.3e-09 65.9 108 49.1
SalBow7G4115 Salvia bowleyana HOM05D004795 ORTHO05D005518 4.3e-09 65.9 108 49.1
Ca_04370_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 2.3e-07 60.1 47 66.0
unitig_748.g8746 Utricularia gibba HOM05D004795 ORTHO05D005518 5.2e-07 58.9 115 42.6
SalBow5G0757 Salvia bowleyana HOM05D004795 ORTHO05D005518 6.8e-07 58.5 94 52.1
HPP92_021866 Vanilla planifolia HOM05D004795 ORTHO05D005518 3.4e-06 56.2 191 28.8


User provided reference genes

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