Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G068700 Manihot esculenta HOM05D006225 ORTHO05D007676 2.9e-199 698.4 357 100.0
Potri.017G115200 Populus trichocarpa HOM05D006225 ORTHO05D007676 2.2e-170 602.4 360 85.6
TWI77G0942 Tripterygium wilfordii HOM05D006225 ORTHO05D007676 3.6e-165 585.1 357 84.6
CiPaw.03G061500 Carya illinoinensis HOM05D006225 ORTHO05D007676 8.1e-165 583.9 357 81.8
Thecc.04G133700 Theobroma cacao HOM05D006225 ORTHO05D007676 3.1e-164 582.0 357 81.5
CSS0013578 Camellia sinensis var. sinensis HOM05D006225 ORTHO05D007676 7.6e-163 577.4 360 82.5
CSS0045838 Camellia sinensis var. sinensis HOM05D006225 ORTHO05D007676 7.6e-163 577.4 360 82.5
Atru.chr1.1695 Acer truncatum HOM05D006225 ORTHO05D007676 1.7e-162 576.2 358 83.5
TAR374G0830 Trochodendron aralioides HOM05D006225 ORTHO05D007676 8.4e-162 573.9 360 81.7
Prupe.2G152900 Prunus persica HOM05D006225 ORTHO05D007676 1.1e-161 573.5 358 81.3
COL.COLO4_09333 Corchorus olitorius HOM05D006225 ORTHO05D007676 2.4e-161 572.4 357 82.4
CANSAT78G2127 Cannabis sativa HOM05D006225 ORTHO05D007676 2.1e-160 569.3 358 80.4
Sabra17G0095400 Salix brachista HOM05D006225 ORTHO05D007676 3.5e-160 568.5 360 81.7
Lj4A191G46 Lonicera japonica HOM05D006225 ORTHO05D007676 8.7e-159 563.9 346 84.4
Gohir.D12G052400 Gossypium hirsutum HOM05D006225 ORTHO05D007676 1.1e-158 563.5 357 80.7
Ciclev10012061m.g Citrus clementina HOM05D006225 ORTHO05D007676 1.5e-158 563.1 357 80.4
Gohir.A12G053700 Gossypium hirsutum HOM05D006225 ORTHO05D007676 5.6e-158 561.2 357 80.4
Gorai.008G055500 Gossypium raimondii HOM05D006225 ORTHO05D007676 5.6e-158 561.2 357 80.4
FvH4_7g12860 Fragaria vesca HOM05D006225 ORTHO05D007676 2.1e-157 559.3 359 77.4
FAN03G3320 Fragaria x ananassa HOM05D006225 ORTHO05D007676 2.1e-157 559.3 359 77.7
FAN06G1752 Fragaria x ananassa HOM05D006225 ORTHO05D007676 2.1e-157 559.3 359 77.4
ECA238G0211 Erigeron canadensis HOM05D006225 ORTHO05D007676 3.4e-155 552.0 361 77.3
Ca_13730_v3 Cicer arietinum L. HOM05D006225 ORTHO05D007676 6.4e-154 547.7 359 76.3
CsaV3_3G020710 Cucumis sativus L. HOM05D006225 ORTHO05D007676 1.4e-153 546.6 358 76.8
Lj2g0022404 Lotus japonicus HOM05D006225 ORTHO05D007676 1.9e-153 546.2 360 76.7
Glyma.13G045900 Glycine max HOM05D006225 ORTHO05D007676 4.2e-153 545.0 361 76.5
Sp7g03650 Schrenkiella parvula HOM05D006225 ORTHO05D007676 7.1e-153 544.3 359 75.2
TPR.G32473 Trifolium pratense HOM05D006225 ORTHO05D007676 2.7e-152 542.3 359 75.2
PGR042G1089 Punica granatum HOM05D006225 ORTHO05D007676 4.6e-152 541.6 358 77.4
Eucgr.G01883 Eucalyptus grandis HOM05D006225 ORTHO05D007676 7.9e-152 540.8 357 76.2
Thhalv10027811m.g Eutrema salsugineum HOM05D006225 ORTHO05D007676 2.3e-151 539.3 359 74.4
AT5G38380 Arabidopsis thaliana HOM05D006225 ORTHO05D007676 3.0e-151 538.9 358 74.3
Glyma.19G049100 Glycine max HOM05D006225 ORTHO05D007676 3.0e-151 538.9 361 75.9
GSVIVG01031021001 Vitis vinifera HOM05D006225 ORTHO05D007676 6.6e-151 537.7 363 77.4
AL7G52230 Arabidopsis lyrata HOM05D006225 ORTHO05D007676 8.7e-151 537.3 358 74.3
Medtr6g018620 Medicago truncatula HOM05D006225 ORTHO05D007676 8.7e-151 537.3 359 75.5
Phvul.004G065800 Phaseolus vulgaris HOM05D006225 ORTHO05D007676 1.5e-150 536.6 361 75.3
Psat1g081360 Pisum sativum HOM05D006225 ORTHO05D007676 4.3e-150 535.0 363 74.7
CARHR214220 Cardamine hirsuta HOM05D006225 ORTHO05D007676 7.4e-150 534.3 359 73.5
Aa31LG9G17110 Aethionema arabicum HOM05D006225 ORTHO05D007676 2.8e-149 532.3 357 73.7
THA.LOC104823860 Tarenaya hassleriana HOM05D006225 ORTHO05D007676 4.8e-149 531.6 356 74.4
MD02G1195600 Malus domestica HOM05D006225 ORTHO05D007676 1.1e-148 530.4 359 76.6
Nn4g23886 Nelumbo nucifera HOM05D006225 ORTHO05D007676 1.1e-148 530.4 323 81.4
C04p45020 Brassica napus HOM05D006225 ORTHO05D007676 9.0e-148 527.3 360 73.1
BolC4t26080H Brassica oleracea HOM05D006225 ORTHO05D007676 9.0e-148 527.3 360 73.1
SGA_v2.0_scaffold33G13506 Striga asiatica HOM05D006225 ORTHO05D007676 9.0e-148 527.3 360 75.3
HanXRQChr14g0438471 Helianthus annuus HOM05D006225 ORTHO05D007676 5.8e-147 524.6 360 75.6
A04p11390 Brassica napus HOM05D006225 ORTHO05D007676 7.6e-147 524.2 359 72.4
BraA04t16801Z Brassica rapa HOM05D006225 ORTHO05D007676 9.9e-147 523.9 360 72.2
Sed0021803 Sechium edule HOM05D006225 ORTHO05D007676 9.9e-147 523.9 378 72.0
Lalb_Chr06g0174551 Lupinus albus HOM05D006225 ORTHO05D007676 1.3e-146 523.5 411 67.6
BcaB02g08011 Brassica carinata HOM05D006225 ORTHO05D007676 2.9e-146 522.3 360 72.5
BcaB06g27198 Brassica carinata HOM05D006225 ORTHO05D007676 6.4e-146 521.2 360 72.2
BcaC02g09645 Brassica carinata HOM05D006225 ORTHO05D007676 1.4e-145 520.0 360 72.2
PSO063G1031 Papaver somniferum HOM05D006225 ORTHO05D007676 1.9e-145 519.6 358 73.5
Migut.H00218 Erythranthe guttata HOM05D006225 ORTHO05D007676 2.7e-144 515.8 360 73.6
VMungo0464G1087 Vigna mungo HOM05D006225 ORTHO05D007676 3.5e-144 515.4 370 71.9
Sopen02g030750 Solanum pennellii HOM05D006225 ORTHO05D007676 1.3e-143 513.5 379 71.2
PSO782G1071 Papaver somniferum HOM05D006225 ORTHO05D007676 1.5e-142 510.0 353 73.1
Aqoxy3G03957 Aquilegia oxysepala HOM05D006225 ORTHO05D007676 1.1e-140 503.8 349 71.6
QL02p051369 Quercus lobata HOM05D006225 ORTHO05D007676 1.4e-140 503.4 405 68.6
Lsat_1_v5_gn_2_79301 Lactuca sativa HOM05D006225 ORTHO05D007676 1.2e-139 500.4 360 71.9
PGSC0003DMG400026393 Solanum tuberosum HOM05D006225 ORTHO05D007676 6.5e-138 494.6 327 76.8
AUR62023301 Chenopodium quinoa HOM05D006225 ORTHO05D007676 8.4e-138 494.2 363 69.7
Carub.0007s3769 Capsella rubella HOM05D006225 ORTHO05D007676 1.8e-135 486.5 356 69.9
Cpa.g.sc282.8 Carica papaya HOM05D006225 ORTHO05D007676 3.3e-134 482.3 356 70.8
SalBow3G1182 Salvia bowleyana HOM05D006225 ORTHO05D007676 4.2e-129 465.3 370 67.3
Os07g0283200 Oryza sativa ssp. japonica HOM05D006225 ORTHO05D007676 7.9e-128 461.1 350 64.9
Zm00001eb360540 Zea mays HOM05D006225 ORTHO05D007676 1.1e-126 457.2 356 62.9
HPP92_020146 Vanilla planifolia HOM05D006225 ORTHO05D007676 8.2e-125 451.1 360 63.3
vmacro05555 Vaccinium macrocarpon HOM05D006225 ORTHO05D007676 1.1e-124 450.7 377 66.8
Oeu030786.4 Olea europaea HOM05D006225 ORTHO05D007676 4.1e-124 448.7 323 72.8
SEGI_09013 Sequoiadendron giganteum HOM05D006225 ORTHO05D007676 3.0e-119 432.6 348 60.3
Nitab4.5_0000659g0030 Nicotiana tabacum HOM05D006225 ORTHO05D007676 9.7e-118 427.6 322 71.1
Nitab4.5_0000912g0210 Nicotiana tabacum HOM05D006225 ORTHO05D007676 1.3e-117 427.2 322 71.7
unitig_0.g7 Utricularia gibba HOM05D006225 ORTHO05D007676 1.3e-117 427.2 346 62.7
ATR1125G113 Amborella trichopoda HOM05D006225 ORTHO05D007676 6.9e-116 421.4 351 62.4
MELO3C023807.2 Cucumis melo HOM05D006225 ORTHO05D007676 1.3e-114 417.2 427 54.8
EL10Ac2g04565 Beta vulgaris HOM05D006225 ORTHO05D007676 6.1e-112 408.3 301 68.8
Rhsim10G0067300 Rhododendron simsii HOM05D006225 ORTHO05D007676 2.0e-110 403.3 362 62.4
Cfa007923 Carpinus fangiana HOM05D006225 ORTHO05D010559 4.4e-110 402.1 252 81.7
AUR62009001 Chenopodium quinoa HOM05D006225 ORTHO05D007676 6.3e-109 398.3 375 58.7
FAN10G1546 Fragaria x ananassa HOM05D006225 ORTHO05D007676 1.1e-105 387.5 384 57.6
arahy.Tifrunner.gnm1.ann1.80Z7L9 Arachis hypogaea HOM05D006225 ORTHO05D007676 1.8e-103 380.2 397 55.2
ClCG05G011660 Citrullus lanatus HOM05D006225 ORTHO05D007676 8.0e-96 354.8 385 55.8
arahy.Tifrunner.gnm1.ann1.IRK6TR Arachis hypogaea HOM05D006225 ORTHO05D007676 8.8e-95 351.3 368 56.0
Sc11g0008330 Simmondsia chinensis HOM05D006225 ORTHO05D007676 3.4e-94 349.4 261 69.3
Haze_14153 Corylus avellana HOM05D006225 ORTHO05D007676 5.4e-92 342.0 345 58.6
Mapoly0135s0006 Marchantia polymorpha HOM05D006225 ORTHO05D007676 5.5e-89 332.0 340 50.0
Pp3c6_6620 Physcomitrium patens HOM05D006225 ORTHO05D007676 6.3e-85 318.5 323 48.6
Zm00001eb156340 Zea mays HOM05D006225 ORTHO05D007676 3.7e-77 292.7 247 60.3
RcHm_v2.0_Chr1g0351931 Rosa chinensis HOM05D006225 ORTHO05D007676 1.2e-75 287.7 165 80.6
Actinidia15885 Actinidia chinensis HOM05D006225 ORTHO05D007676 5.9e-75 285.4 167 85.0
Cc07_g08800 Coffea canephora HOM05D006225 ORTHO05D007676 8.6e-74 281.6 172 79.7
Peaxi162Scf00394g00621 Petunia axillaris HOM05D006225 ORTHO05D007676 7.5e-70 268.5 192 74.5
RcHm_v2.0_Chr1g0351941 Rosa chinensis HOM05D006225 ORTHO05D007676 1.3e-69 267.7 176 78.4
Eucgr.H04974 Eucalyptus grandis HOM05D006225 ORTHO05D007676 3.7e-69 266.2 237 58.6
FAN06G4019 Fragaria x ananassa HOM05D006225 ORTHO05D007676 6.4e-69 265.4 176 76.7
Cc07_g08810 Coffea canephora HOM05D006225 ORTHO05D007676 8.6e-66 255.0 176 78.4
FAN10G1204 Fragaria x ananassa HOM05D006225 ORTHO05D007676 8.6e-66 255.0 173 70.5
Solyc02g086060.4 Solanum lycopersicum HOM05D006225 ORTHO05D007676 6.8e-63 245.4 179 73.7
Hund13715 Selenicereus undatus HOM05D006225 ORTHO05D007676 1.2e-62 244.6 186 65.1
SMO196G0121 Selaginella moellendorffii HOM05D006225 ORTHO05D007676 7.1e-60 235.3 307 41.4
CDE02G4721 Ceratophyllum demersum HOM05D006225 ORTHO05D007676 6.2e-56 222.2 173 67.1
Solyc02g086070.2 Solanum lycopersicum HOM05D006225 ORTHO05D007676 1.5e-54 217.6 141 75.9
Hma1.2p1_0136F.1_g062270 Hydrangea macrophylla HOM05D006225 ORTHO05D007676 2.6e-54 216.9 123 81.3
Peaxi162Scf00394g00622 Petunia axillaris HOM05D006225 ORTHO05D007676 8.1e-48 195.3 108 85.2
MD07G1125200 Malus domestica HOM05D006225 ORTHO05D007676 5.4e-44 182.6 111 76.6
arahy.Tifrunner.gnm1.ann1.PRIQ1K Arachis hypogaea HOM05D006225 ORTHO05D007676 7.1e-44 182.2 134 68.7
arahy.Tifrunner.gnm1.ann1.8IQW6A Arachis hypogaea HOM05D006225 ORTHO05D007676 6.0e-43 179.1 111 73.0
Oeu008428.1 Olea europaea HOM05D006225 ORTHO05D007676 4.8e-40 169.5 213 52.6
arahy.Tifrunner.gnm1.ann1.RE0KC5 Arachis hypogaea HOM05D006225 ORTHO05D007676 8.1e-40 168.7 139 63.3
arahy.Tifrunner.gnm1.ann1.QBFC9G Arachis hypogaea HOM05D006225 ORTHO05D007676 2.6e-38 163.7 126 63.5
SHI22412 Sapria himalayana HOM05D006225 ORTHO05D007676 5.8e-38 162.5 94 80.9
HanXRQChr13g0396101 Helianthus annuus HOM05D006225 ORTHO05D007676 2.1e-35 154.1 91 81.3
CDE02G0503 Ceratophyllum demersum HOM05D006225 ORTHO05D007676 3.9e-34 149.8 100 70.0
arahy.Tifrunner.gnm1.ann1.QHM34M Arachis hypogaea HOM05D006225 ORTHO05D007676 5.1e-34 149.4 133 60.9
Mapoly0085s0089 Marchantia polymorpha HOM05D006555 ORTHO05D008376 5.6e-33 146.0 345 29.6
arahy.Tifrunner.gnm1.ann1.A87HRQ Arachis hypogaea HOM05D006225 ORTHO05D007676 1.1e-31 141.7 102 67.6
arahy.Tifrunner.gnm1.ann1.FD2CEU Arachis hypogaea HOM05D006225 ORTHO05D007676 7.6e-30 135.6 104 66.3
arahy.Tifrunner.gnm1.ann1.5T0UVN Arachis hypogaea HOM05D006225 ORTHO05D007676 1.4e-28 131.3 76 77.6
MD07G1125400 Malus domestica HOM05D006225 ORTHO05D007676 4.8e-24 116.3 115 58.3
Actinidia36322 Actinidia chinensis HOM05D006225 ORTHO05D007676 4.0e-23 113.2 83 73.5
CBR_g65298 Chara braunii HOM05D006225 ORTHO05D007676 4.0e-23 113.2 121 43.8
Hma1.2p1_0239F.1_g099920 Hydrangea macrophylla HOM05D006225 ORTHO05D007676 3.4e-22 110.2 74 70.3
CBR_g8910 Chara braunii HOM05D006555 ORTHO05D008376 1.7e-21 107.8 228 32.5
arahy.Tifrunner.gnm1.ann1.GQQ1MZ Arachis hypogaea HOM05D006225 ORTHO05D007676 2.9e-21 107.1 75 73.3
Eucgr.L03301 Eucalyptus grandis HOM05D006225 ORTHO05D007676 2.7e-19 100.5 80 67.5
Lsat_1_v5_gn_0_24261 Lactuca sativa HOM05D006555 ORTHO05D008376 6.9e-15 85.9 343 23.9
EL10Ac3g05120 Beta vulgaris HOM05D006555 ORTHO05D008376 2.0e-14 84.3 309 25.9
arahy.Tifrunner.gnm1.ann1.LDE0EK Arachis hypogaea HOM05D006555 ORTHO05D008376 3.4e-14 83.6 261 23.4
TWI56G0535 Tripterygium wilfordii HOM05D006555 ORTHO05D008376 3.4e-14 83.6 315 26.7
HanXRQChr15g0474321 Helianthus annuus HOM05D006555 ORTHO05D008376 5.9e-14 82.8 327 23.9
Duzib187G0608 Durio zibethinus HOM05D006555 ORTHO05D008376 7.6e-14 82.4 317 25.6
Glyma.08G102000 Glycine max HOM05D006555 ORTHO05D008376 9.3e-12 75.5 330 24.8
Manes.17G119457 Manihot esculenta HOM05D006555 ORTHO05D008376 1.2e-11 75.1 242 25.2
Sc20g0004830 Simmondsia chinensis HOM05D006555 ORTHO05D008376 3.6e-11 73.6 313 24.3
Potri.005G110300 Populus trichocarpa HOM05D006555 ORTHO05D008376 5.1e-10 69.7 325 24.0
SEGI_26593 Sequoiadendron giganteum HOM05D006555 ORTHO05D008376 5.1e-10 69.7 151 29.1
AUR62005932 Chenopodium quinoa HOM05D006555 ORTHO05D008376 1.5e-09 68.2 235 24.3
AUR62005935 Chenopodium quinoa HOM05D006555 ORTHO05D008376 1.5e-09 68.2 235 24.3
VMungo0251G3141 Vigna mungo HOM05D006555 ORTHO05D008376 1.5e-09 68.2 327 24.5
BcaC04g24063 Brassica carinata HOM05D006225 ORTHO05D007676 2.8e-08 63.9 38 76.3
ECA246G4860 Erigeron canadensis HOM05D006555 ORTHO05D008376 6.3e-08 62.8 221 24.4
HPP92_002867 Vanilla planifolia HOM05D006555 ORTHO05D008376 1.4e-07 61.6 169 29.0


User provided reference genes

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