Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 2.0e-138 495.7 247 100.0
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.1e-99 367.1 247 75.7
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 2.7e-95 352.4 247 72.5
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 2.8e-92 342.4 246 69.9
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.8e-91 339.7 247 71.3
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 5.9e-90 334.7 211 76.3
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 2.9e-89 332.4 250 70.0
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 3.8e-89 332.0 241 70.5
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 2.5e-88 329.3 229 71.6
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 2.5e-88 329.3 242 67.8
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 4.7e-87 325.1 241 65.1
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 4.7e-87 325.1 247 67.6
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 2.3e-86 322.8 245 68.2
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 4.0e-86 322.0 245 66.5
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 8.8e-86 320.9 244 66.0
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 5.7e-85 318.2 211 75.8
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.7e-84 316.6 246 69.9
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 2.2e-84 316.2 239 67.8
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 3.7e-84 315.5 244 64.3
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 4.9e-84 315.1 205 74.1
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 8.3e-84 314.3 242 64.0
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 3.1e-83 312.4 246 65.4
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 3.1e-83 312.4 245 64.5
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 7.0e-83 311.2 246 65.4
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 9.1e-83 310.8 247 64.8
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 1.2e-82 310.5 250 63.6
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 1.2e-82 310.5 246 65.4
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 1.6e-82 310.1 252 66.7
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 1.0e-81 307.4 208 72.6
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 2.3e-81 306.2 242 63.6
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 8.6e-81 304.3 189 77.2
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 1.9e-80 303.1 244 66.8
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 5.5e-80 301.6 242 62.4
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 1.6e-79 300.1 251 62.2
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 3.0e-78 295.8 244 62.3
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 5.2e-78 295.0 247 60.7
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 1.2e-77 293.9 251 60.6
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 1.5e-77 293.5 247 60.3
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 1.5e-77 293.5 248 61.3
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 2.0e-77 293.1 244 61.1
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 7.5e-77 291.2 246 58.9
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 7.5e-77 291.2 246 58.9
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 1.3e-76 290.4 208 69.7
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 1.3e-76 290.4 185 74.6
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 2.2e-76 289.7 250 58.0
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 2.9e-76 289.3 248 58.9
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 3.7e-76 288.9 251 61.4
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 1.1e-75 287.3 248 60.1
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.1e-75 287.3 194 72.7
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.4e-75 287.0 250 62.8
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.4e-75 287.0 251 61.8
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 1.8e-75 286.6 237 62.4
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 1.8e-75 286.6 261 61.7
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 2.4e-75 286.2 240 61.7
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.4e-75 286.2 201 69.7
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.4e-75 286.2 236 64.4
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.4e-75 286.2 209 67.0
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 4.1e-75 285.4 250 58.4
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 4.1e-75 285.4 202 70.3
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 5.4e-75 285.0 280 57.1
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 5.4e-75 285.0 177 76.8
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 7.0e-75 284.6 242 61.6
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 7.0e-75 284.6 208 68.8
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 9.2e-75 284.3 201 69.7
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.6e-74 283.5 255 58.8
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 2.0e-74 283.1 283 55.1
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 2.7e-74 282.7 244 63.1
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 3.5e-74 282.3 251 58.2
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 5.9e-74 281.6 238 61.8
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 5.9e-74 281.6 251 56.6
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 2.3e-73 279.6 176 76.7
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 2.3e-73 279.6 255 57.6
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 3.9e-73 278.9 236 61.4
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 8.6e-73 277.7 255 58.8
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 1.1e-72 277.3 241 58.9
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 1.5e-72 276.9 248 57.3
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 2.5e-72 276.2 241 61.0
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 3.3e-72 275.8 236 60.6
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 5.6e-72 275.0 199 68.8
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 5.6e-72 275.0 235 62.6
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 9.5e-72 274.2 180 75.6
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 9.5e-72 274.2 180 75.6
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 2.8e-71 272.7 244 59.4
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 2.8e-71 272.7 182 73.6
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 4.7e-71 271.9 186 73.1
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 6.1e-71 271.6 248 57.3
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 8.0e-71 271.2 209 66.0
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 1.0e-70 270.8 183 74.3
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 1.0e-70 270.8 183 74.3
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 1.4e-70 270.4 183 74.3
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 1.8e-70 270.0 214 65.9
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 2.3e-70 269.6 233 60.1
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 5.2e-70 268.5 177 73.4
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 3.4e-69 265.8 177 72.3
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 3.4e-69 265.8 239 60.3
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 5.8e-69 265.0 242 58.7
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 5.8e-69 265.0 201 65.7
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 7.5e-69 264.6 180 73.3
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 9.2e-67 257.7 238 59.2
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 4.6e-66 255.4 154 80.5
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 2.3e-65 253.1 154 79.2
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 5.0e-65 251.9 175 66.9
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.6e-65 251.5 150 82.7
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.3e-64 248.8 150 82.0
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 9.5e-64 247.7 145 84.1
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 9.5e-64 247.7 234 54.7
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 2.1e-63 246.5 143 83.2
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 1.4e-62 243.8 200 62.5
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 8.9e-62 241.1 150 75.3
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 1.2e-61 240.7 236 54.2
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 3.4e-61 239.2 156 74.4
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 3.4e-61 239.2 200 61.0
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 4.4e-61 238.8 142 81.0
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 9.8e-61 237.7 220 60.5
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 9.8e-61 237.7 173 65.9
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 9.8e-61 237.7 173 65.9
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 1.3e-60 237.3 237 56.5
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.7e-60 236.9 200 60.5
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 1.7e-60 236.9 143 78.3
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 4.9e-60 235.3 142 78.2
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 7.1e-59 231.5 246 51.6
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 5.6e-56 221.9 152 73.0
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 1.1e-54 217.6 129 78.3
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 5.2e-54 215.3 199 58.3
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 1.2e-53 214.2 177 60.5
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 1.9e-51 206.8 198 57.1
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 5.4e-51 205.3 199 56.3
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 7.1e-51 204.9 180 61.7
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 1.2e-50 204.1 255 49.0
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 5.6e-48 195.3 187 54.0
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 2.1e-47 193.4 142 65.5
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 2.8e-47 193.0 140 62.1
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 3.6e-47 192.6 169 61.5
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 3.1e-46 189.5 149 59.1
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 2.6e-45 186.4 140 62.1
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 1.7e-44 183.7 139 58.3
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 2.2e-44 183.3 174 51.7
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 2.3e-41 173.3 235 46.0
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.4e-38 163.3 202 44.6
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 2.6e-37 159.8 146 61.0
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 1.9e-35 153.7 239 43.1
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 2.1e-34 150.2 172 50.0
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 1.9e-32 143.7 126 59.5
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 1.4e-27 127.5 157 49.7
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.4e-22 110.9 79 64.6
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 6.5e-20 102.1 141 39.7
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 3.5e-18 96.3 158 32.9
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 2.5e-16 90.1 131 35.1
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 1.4e-14 84.3 138 37.0
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 3.4e-13 79.7 154 31.2
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 4.2e-11 72.8 122 42.6
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 4.2e-11 72.8 83 51.8
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.5e-11 72.4 74 47.3
QL02p051406 Quercus lobata HOM05D004693 ORTHO05D005545 9.3e-11 71.6 91 45.1
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.6e-10 70.9 120 32.5
FAN08G1603 Fragaria x ananassa HOM05D004693 ORTHO05D005545 2.7e-10 70.1 94 42.6
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 7.9e-10 68.6 152 31.6
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 3.0e-09 66.6 114 32.5
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 8.7e-09 65.1 80 50.0
FAN04G3248 Fragaria x ananassa HOM05D004693 ORTHO05D005545 1.3e-07 61.2 76 42.1


User provided reference genes

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