Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 0.0e+00 4187.5 2200 100.0
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 0.0e+00 3088.1 2243 73.3
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 0.0e+00 2941.4 2167 72.0
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 0.0e+00 2920.6 2206 70.5
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 0.0e+00 2868.6 2206 70.5
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 0.0e+00 2841.2 2250 68.4
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 0.0e+00 2837.4 2222 69.2
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 0.0e+00 2832.4 2124 71.0
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2811.6 2180 69.7
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2810.4 2137 70.8
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 0.0e+00 2809.6 2177 69.3
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 0.0e+00 2809.2 2182 69.7
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2803.5 2195 69.1
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2799.2 2213 68.7
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 0.0e+00 2797.7 2121 70.5
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2792.7 2110 70.9
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 0.0e+00 2786.5 2159 69.6
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2783.1 2152 69.4
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2780.0 1892 76.6
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 0.0e+00 2773.8 2221 68.5
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2679.8 2184 67.4
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 0.0e+00 2678.7 2191 65.7
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 0.0e+00 2671.0 2196 66.3
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 0.0e+00 2665.6 2186 66.5
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 0.0e+00 2665.2 2015 69.3
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 0.0e+00 2653.6 2168 65.9
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 0.0e+00 2632.4 2166 65.9
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 0.0e+00 2611.6 2095 66.5
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2604.7 2173 65.1
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 0.0e+00 2603.2 2207 64.0
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 0.0e+00 2601.6 2218 63.7
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 0.0e+00 2591.2 2153 65.1
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 0.0e+00 2573.1 2151 64.8
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 0.0e+00 2555.4 1989 67.6
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 0.0e+00 2547.7 2552 58.0
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2545.8 2216 63.3
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2541.1 1999 67.1
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2541.1 1999 67.1
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2528.8 2207 63.5
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 0.0e+00 2522.7 2018 65.9
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 0.0e+00 2519.6 2011 65.7
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 0.0e+00 2514.2 2213 62.0
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 0.0e+00 2505.7 2147 63.2
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 0.0e+00 2502.6 2072 64.7
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 0.0e+00 2501.5 2224 61.7
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 2494.5 1633 78.4
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 0.0e+00 2491.1 2198 62.2
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 0.0e+00 2490.3 2154 62.3
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 0.0e+00 2488.8 2226 61.0
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 2488.4 2227 61.1
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 2488.4 1992 65.7
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 0.0e+00 2486.4 2234 61.1
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2479.5 2153 64.2
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 0.0e+00 2478.0 1987 65.9
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 2477.2 2213 61.0
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 0.0e+00 2472.2 2217 61.4
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 0.0e+00 2468.3 2013 64.6
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 0.0e+00 2463.0 1993 65.2
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2460.3 2242 59.8
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 0.0e+00 2454.1 1998 65.7
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 0.0e+00 2445.6 2010 64.3
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 2426.0 2058 63.3
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2388.6 2223 59.7
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 0.0e+00 2337.0 2357 57.0
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 0.0e+00 2336.6 1963 64.3
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2323.5 2159 59.0
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 0.0e+00 2322.7 2073 61.0
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 0.0e+00 2316.2 1452 81.3
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 0.0e+00 2248.4 1851 64.1
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 0.0e+00 2228.4 3126 46.1
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 0.0e+00 2221.8 2187 57.7
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 0.0e+00 2210.3 2165 57.1
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 2184.8 2101 57.8
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 0.0e+00 1972.2 2008 54.9
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 0.0e+00 1943.3 1986 53.9
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 0.0e+00 1890.5 1602 63.3
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 0.0e+00 1859.7 1748 60.2
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 0.0e+00 1850.9 1997 53.4
Psat3g206280 Pisum sativum HOM05D003845 ORTHO05D004161 0.0e+00 1779.2 1666 59.7
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 1773.1 1129 80.8
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 0.0e+00 1723.8 1651 56.8
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 0.0e+00 1568.5 2003 45.0
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 0.0e+00 1536.9 2008 44.9
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 0.0e+00 1439.9 1349 56.8
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 0.0e+00 1358.6 1997 41.7
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 0.0e+00 1322.4 918 73.2
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 0.0e+00 1290.0 2003 40.6
SEGI_31548 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 0.0e+00 1260.0 1522 47.6
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 0.0e+00 1236.9 2109 37.7
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 1234.2 1989 39.7
Ca_04077_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 0.0e+00 1233.8 1445 51.7
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 0.0e+00 1165.2 1030 60.4
Ciclev10010942m.g Citrus clementina HOM05D003845 ORTHO05D004161 0.0e+00 1129.8 1036 61.2
CARHR059600 Cardamine hirsuta HOM05D003845 ORTHO05D004161 0.0e+00 1097.0 848 67.5
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 1.5e-306 1057.4 837 65.6
Lj1g0022983 Lotus japonicus HOM05D003845 ORTHO05D004161 1.3e-260 904.8 1021 51.6
unitig_899.g14511 Utricularia gibba HOM05D003845 ORTHO05D004161 1.8e-254 884.4 1220 44.8
Hund16135 Selenicereus undatus HOM05D003845 ORTHO05D004161 1.2e-231 808.5 982 48.1
BcaB03g15908 Brassica carinata HOM05D003845 ORTHO05D004161 3.4e-229 800.4 792 54.7
Cpa.g.sc179.5 Carica papaya HOM05D003845 ORTHO05D004161 1.2e-223 781.9 979 50.7
unitig_899.g14510 Utricularia gibba HOM05D003845 ORTHO05D004161 9.3e-219 765.8 726 58.3
DCAR_017205 Daucus carota HOM05D003845 ORTHO05D004161 1.7e-217 761.5 719 57.2
EL10Ac2g04610 Beta vulgaris HOM05D003845 ORTHO05D004161 7.6e-213 746.1 578 66.8
CSS0018407 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 8.4e-196 689.5 442 81.2
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 5.7e-192 676.8 469 74.8
Ciclev10011943m.g Citrus clementina HOM05D003845 ORTHO05D004161 9.7e-176 622.9 386 80.6
Lj2C445T15 Lonicera japonica HOM05D003845 ORTHO05D004161 1.1e-171 609.4 436 73.9
ClCG11G005430 Citrullus lanatus HOM05D003845 ORTHO05D004161 5.1e-169 600.5 375 80.5
SEGI_40473 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 9.5e-139 500.0 403 63.5
Cpa.g.sc179.9 Carica papaya HOM05D003845 ORTHO05D004161 1.3e-132 479.6 811 39.5
ATR0564G289 Amborella trichopoda HOM05D003845 ORTHO05D004161 1.4e-118 433.0 288 76.4
FAN09G0938 Fragaria x ananassa HOM05D003845 ORTHO05D004161 1.1e-113 416.8 264 81.1
Rhsim09G0080700 Rhododendron simsii HOM05D003845 ORTHO05D004161 4.0e-113 414.8 364 65.4
Glyma.08G364200 Glycine max HOM05D003845 ORTHO05D004161 1.1e-102 380.2 604 42.2
SEGI_32880 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 6.0e-101 374.4 725 34.5
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 1.2e-96 360.1 293 64.2
RcHm_v2.0_Chr2g0163391 Rosa chinensis HOM05D003845 ORTHO05D004161 9.9e-96 357.1 287 69.0
PRCOL_00002157 Prasinoderma coloniale HOM05D003845 ORTHO05D004161 1.4e-94 353.2 1526 25.4
Cre16.g684100 Chlamydomonas reinhardtii HOM05D003845 ORTHO05D004161 1.4e-86 326.6 1781 23.8
Lsat_1_v5_gn_4_153641 Lactuca sativa HOM05D003845 ORTHO05D004161 7.1e-78 297.7 314 57.0
Haze_14141 Corylus avellana HOM05D003845 ORTHO05D004161 2.3e-76 292.7 428 45.8
COL.COLO4_05467 Corchorus olitorius HOM05D003845 ORTHO05D004161 1.1e-75 290.4 606 36.0
CAN.G625.3 Capsicum annuum HOM05D003845 ORTHO05D004161 5.7e-67 261.5 160 83.1
CSS0040864 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 5.5e-62 245.0 148 82.4
CiPaw.04G041000 Carya illinoinensis HOM05D003845 ORTHO05D004161 1.4e-60 240.4 427 43.6
CSS0008855 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 3.3e-59 235.7 194 66.5
Ca_04078_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 9.1e-57 227.6 157 76.4
QL02p051676 Quercus lobata HOM05D003845 ORTHO05D004161 4.7e-53 215.3 125 88.8
Lsat_1_v5_gn_5_95120 Lactuca sativa HOM05D000020 ORTHO05D000543 2.8e-50 206.1 187 64.2
Lsat_1_v5_gn_3_65920 Lactuca sativa HOM05D003845 ORTHO05D004161 3.7e-50 205.7 180 66.7
Lsat_1_v5_gn_4_179241 Lactuca sativa HOM05D003845 ORTHO05D004161 3.7e-50 205.7 180 66.7
Lsat_1_v5_gn_8_43240 Lactuca sativa HOM05D003845 ORTHO05D004161 3.7e-50 205.7 180 66.7
Actinidia15875 Actinidia chinensis HOM05D003845 ORTHO05D004161 7.2e-46 191.4 119 83.2
Lj6g0007936 Lotus japonicus HOM05D003845 ORTHO05D004161 1.3e-39 170.6 491 30.5
Lsat_1_v5_gn_5_70501 Lactuca sativa HOM05D003845 ORTHO05D004161 6.1e-37 161.8 128 70.3
Manes.07G074028 Manihot esculenta HOM05D003845 ORTHO05D004161 2.3e-36 159.8 90 90.0
Cpa.g.sc179.6 Carica papaya HOM05D003845 ORTHO05D004161 3.0e-36 159.5 150 58.0
Actinidia15877 Actinidia chinensis HOM05D003845 ORTHO05D004161 7.5e-35 154.8 196 46.4
CDE02G2490 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 2.7e-32 146.4 230 40.4
Gorai.001G080600 Gossypium raimondii HOM05D003845 ORTHO05D004161 1.2e-27 131.0 112 65.2
Lsat_1_v5_gn_8_163720 Lactuca sativa HOM05D003845 ORTHO05D004161 2.6e-27 129.8 116 65.5
Dinv33934 Davidia involucrata HOM05D003845 ORTHO05D004161 5.9e-24 118.6 244 43.4
Cfa024622 Carpinus fangiana HOM05D003845 ORTHO05D004161 1.0e-23 117.9 543 24.1
RcHm_v2.0_Chr2g0166401 Rosa chinensis HOM05D003845 ORTHO05D004161 2.3e-23 116.7 156 42.9
CSS0031203 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 6.6e-23 115.2 69 89.9
Cpa.g.c36099 Carica papaya HOM05D003845 ORTHO05D004161 1.1e-22 114.4 75 78.7
MCO14G535 Micromonas commoda HOM05D003845 ORTHO05D004161 1.9e-22 113.6 551 24.7
Cpa.g.sc3785.2 Carica papaya HOM05D003845 ORTHO05D004161 1.2e-21 110.9 74 78.4
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 4.9e-18 99.0 66 69.7
CAN.G178.11 Capsicum annuum HOM05D007284 ORTHO05D009303 6.4e-18 98.6 75 68.0
COL.COLO4_16180 Corchorus olitorius HOM05D003845 ORTHO05D004161 1.1e-17 97.8 53 88.7
Os06g0505100 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 1.7e-15 90.5 110 40.0
RcHm_v2.0_Chr2g0123031 Rosa chinensis HOM05D003845 ORTHO05D004161 2.3e-15 90.1 70 67.1
Actinidia17348 Actinidia chinensis HOM05D003226 ORTHO05D015784 5.0e-15 89.0 56 76.8
Actinidia17345 Actinidia chinensis HOM05D003845 ORTHO05D004161 6.6e-15 88.6 54 79.6
arahy.Tifrunner.gnm1.ann1.57NG5G Arachis hypogaea HOM05D003845 ORTHO05D004161 1.5e-14 87.4 53 79.2
Actinidia13420 Actinidia chinensis HOM05D003845 ORTHO05D004161 1.9e-14 87.0 62 69.4
arahy.Tifrunner.gnm1.ann1.395ZIT Arachis hypogaea HOM05D003845 ORTHO05D004161 1.9e-14 87.0 61 75.4
CSS0027472 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 7.3e-14 85.1 54 75.9
Actinidia20836 Actinidia chinensis HOM05D004442 ORTHO05D002066 1.6e-13 84.0 70 70.0
Actinidia20850 Actinidia chinensis HOM05D003845 ORTHO05D004161 1.6e-13 84.0 100 57.0
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 2.1e-13 83.6 54 61.1
EL10Ac8g19727 Beta vulgaris HOM05D003845 ORTHO05D004161 4.7e-13 82.4 54 81.5
Cpa.g.sc179.7 Carica papaya HOM05D003845 ORTHO05D004161 1.0e-12 81.3 57 73.7
Pp3c9_4980 Physcomitrium patens HOM05D003845 ORTHO05D004161 1.0e-12 81.3 115 40.9
RcHm_v2.0_Chr2g0166391 Rosa chinensis HOM05D003845 ORTHO05D004161 2.3e-12 80.1 87 55.2
TPR.G40067 Trifolium pratense HOM05D003845 ORTHO05D004161 5.2e-12 79.0 51 78.4
Hund04285 Selenicereus undatus HOM05D003845 ORTHO05D004161 1.5e-11 77.4 57 66.7
CSS0006962 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.6e-11 76.6 42 90.5
EL10Ac9g21747 Beta vulgaris HOM05D000802 ORTHO05D001074 1.1e-09 71.2 68 63.2
ClCG11G005420 Citrullus lanatus HOM05D003845 ORTHO05D004161 1.6e-08 67.4 50 72.0
Lsat_1_v5_gn_1_87981 Lactuca sativa HOM05D003845 ORTHO05D004161 1.6e-08 67.4 46 69.6
Mapoly0010s0133 Marchantia polymorpha HOM05D003845 ORTHO05D004161 2.7e-08 66.6 110 36.4
Lsat_1_v5_gn_8_96981 Lactuca sativa HOM05D001957 ORTHO05D004161 4.6e-08 65.9 41 78.0
Actinidia15876 Actinidia chinensis HOM05D003845 ORTHO05D004161 6.0e-08 65.5 68 48.5
arahy.Tifrunner.gnm1.ann1.MNN8Y6 Arachis hypogaea HOM05D003845 ORTHO05D004161 3.9e-07 62.8 63 55.6
CSS0032645 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 3.9e-07 62.8 48 68.8
MBI02_g02968_MAGBIO Magnolia biondii HOM05D003845 ORTHO05D004161 3.9e-07 62.8 45 68.9
Lsat_1_v5_gn_7_94541 Lactuca sativa HOM05D003845 ORTHO05D004161 5.0e-07 62.4 41 73.2


User provided reference genes

Program Settings