Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G066501 Manihot esculenta HOM05D004326 ORTHO05D004570 3.6e-20 100.5 47 100.0
TWI12G0968 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 2.8e-17 90.9 47 85.1
TWI56G0546 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 8.2e-17 89.4 47 83.0
Potri.004G102950 Populus trichocarpa HOM05D004326 ORTHO05D004570 1.2e-15 85.5 45 84.4
Manes.01G107900 Manihot esculenta HOM05D004326 ORTHO05D004570 1.6e-15 85.1 49 83.7
Glyma.18G280800 Glycine max HOM05D004326 ORTHO05D004570 7.7e-15 82.8 46 78.3
Phvul.008G020301 Phaseolus vulgaris HOM05D004326 ORTHO05D004570 1.7e-14 81.6 45 77.8
Glyma.08G256500 Glycine max HOM05D004326 ORTHO05D004570 2.2e-14 81.3 45 77.8
Thecc.04G138400 Theobroma cacao HOM05D004326 ORTHO05D004570 3.8e-14 80.5 47 74.5
Potri.017G112100 Populus trichocarpa HOM05D004326 ORTHO05D004570 8.5e-14 79.3 45 80.0
Lalb_Chr17g0336511 Lupinus albus HOM05D004326 ORTHO05D004570 1.1e-13 79.0 46 73.9
CANSAT64G0444 Cannabis sativa HOM05D004326 ORTHO05D004570 7.2e-13 76.3 51 68.6
CiPaw.03G059200 Carya illinoinensis HOM05D004326 ORTHO05D004570 1.2e-12 75.5 45 71.1
Duzib138G0964 Durio zibethinus HOM05D004326 ORTHO05D004570 1.6e-12 75.1 44 75.0
Gohir.A07G168701 Gossypium hirsutum HOM05D004326 ORTHO05D004570 2.7e-12 74.3 42 76.2
Gohir.D07G179500 Gossypium hirsutum HOM05D004326 ORTHO05D004570 2.7e-12 74.3 42 76.2
Gorai.001G200500 Gossypium raimondii HOM05D004326 ORTHO05D004570 2.7e-12 74.3 42 76.2
CiPaw.15G127400 Carya illinoinensis HOM05D004326 ORTHO05D004570 3.6e-12 73.9 47 63.8
AT1G67265 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 6.1e-12 73.2 41 75.6
Carub.0002s1354 Capsella rubella HOM05D004326 ORTHO05D004570 6.1e-12 73.2 41 75.6
CiPaw.15G003600 Carya illinoinensis HOM05D004326 ORTHO05D004570 8.0e-12 72.8 47 68.1
THA.LOC109117071 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 8.0e-12 72.8 42 76.2
Thecc.02G361000 Theobroma cacao HOM05D004326 ORTHO05D004570 1.4e-11 72.0 47 70.2
PGR042G3431 Punica granatum HOM05D004326 ORTHO05D004570 5.2e-11 70.1 47 70.2
C06p43000 Brassica napus HOM05D004326 ORTHO05D004570 1.2e-10 68.9 41 73.2
BolC6t39135H Brassica oleracea HOM05D004326 ORTHO05D004570 1.2e-10 68.9 41 73.2
CAN.G93.32 Capsicum annuum HOM05D004326 ORTHO05D004570 1.2e-10 68.9 50 66.0
Duzib268G0802 Durio zibethinus HOM05D004326 ORTHO05D004570 1.2e-10 68.9 47 66.0
Glyma.02G099000 Glycine max HOM05D004326 ORTHO05D004570 1.2e-10 68.9 44 70.5
Duzib251G0285 Durio zibethinus HOM05D004326 ORTHO05D004570 1.5e-10 68.6 47 63.8
Prupe.3G240100 Prunus persica HOM05D004326 ORTHO05D004570 1.5e-10 68.6 52 59.6
BraA07t31013Z Brassica rapa HOM05D004326 ORTHO05D004570 2.0e-10 68.2 41 73.2
CANSAT64G1998 Cannabis sativa HOM05D004326 ORTHO05D004570 2.0e-10 68.2 48 68.8
MD09G1083800 Malus domestica HOM05D004326 ORTHO05D004570 2.0e-10 68.2 51 56.9
Glyma.20G185900 Glycine max HOM05D004326 ORTHO05D004570 2.6e-10 67.8 47 63.8
Solyc02g065570.1 Solanum lycopersicum HOM05D004326 ORTHO05D004570 2.6e-10 67.8 39 74.4
Duzib084G0446 Durio zibethinus HOM05D004326 ORTHO05D004570 3.4e-10 67.4 50 66.0
Lalb_Chr02g0151761 Lupinus albus HOM05D004326 ORTHO05D004570 3.4e-10 67.4 46 58.7
Duzib068G0156 Durio zibethinus HOM05D004326 ORTHO05D004570 4.4e-10 67.0 47 61.7
Lalb_Chr06g0170221 Lupinus albus HOM05D004326 ORTHO05D004570 4.4e-10 67.0 47 61.7
Manes.14G097600 Manihot esculenta HOM05D004326 ORTHO05D004570 4.4e-10 67.0 47 63.8
Phvul.007G102250 Phaseolus vulgaris HOM05D004326 ORTHO05D004570 5.7e-10 66.6 47 61.7
THA.LOC104805244 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 5.7e-10 66.6 47 61.7
THA.LOC104825713 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 5.7e-10 66.6 47 61.7
C03p08740 Brassica napus HOM05D004326 ORTHO05D004570 7.5e-10 66.2 36 75.0
BolC3t13372H Brassica oleracea HOM05D004326 ORTHO05D004570 7.5e-10 66.2 36 75.0
Glyma.10G204600 Glycine max HOM05D004326 ORTHO05D004570 7.5e-10 66.2 47 61.7
PSO063G2411 Papaver somniferum HOM05D004326 ORTHO05D004570 7.5e-10 66.2 45 68.9
PSO782G5714 Papaver somniferum HOM05D004326 ORTHO05D004570 7.5e-10 66.2 45 68.9
AL2G27790 Arabidopsis lyrata HOM05D004326 ORTHO05D004570 1.3e-09 65.5 47 61.7
AT1G68825 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 1.3e-09 65.5 47 61.7
C06p37300 Brassica napus HOM05D004326 ORTHO05D004570 1.3e-09 65.5 47 61.7
FvH4_6g45391 Fragaria vesca HOM05D004326 ORTHO05D004570 1.3e-09 65.5 36 75.0
FAN14G2544 Fragaria x ananassa HOM05D004326 ORTHO05D004570 1.3e-09 65.5 36 75.0
FAN14G3188 Fragaria x ananassa HOM05D004326 ORTHO05D004570 1.3e-09 65.5 36 75.0
Glyma.01G088000 Glycine max HOM05D004326 ORTHO05D004570 1.3e-09 65.5 48 62.5
Glyma.02G100100 Glycine max HOM05D004326 ORTHO05D004570 1.3e-09 65.5 48 62.5
Gohir.D12G173600 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.3e-09 65.5 48 64.6
Gohir.D13G069701 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.3e-09 65.5 47 59.6
Atru.chr11.1355 Acer truncatum HOM05D004326 ORTHO05D004570 1.7e-09 65.1 48 62.5
Gohir.A13G053100 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.7e-09 65.1 47 59.6
Gorai.008G186200 Gossypium raimondii HOM05D004326 ORTHO05D004570 1.7e-09 65.1 48 64.6
THA.LOC109117025 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 1.7e-09 65.1 47 59.6
Gohir.A12G170400 Gossypium hirsutum HOM05D004326 ORTHO05D004570 2.2e-09 64.7 48 62.5
Prupe.5G217900 Prunus persica HOM05D004326 ORTHO05D004570 2.2e-09 64.7 47 61.7
PGR119G2456 Punica granatum HOM05D004326 ORTHO05D004570 2.2e-09 64.7 47 59.6
A03p07530 Brassica napus HOM05D004326 ORTHO05D004570 2.8e-09 64.3 36 72.2
BraA03t10081Z Brassica rapa HOM05D004326 ORTHO05D004570 2.8e-09 64.3 36 72.2
Duzib084G0016 Durio zibethinus HOM05D004326 ORTHO05D004570 2.8e-09 64.3 50 64.0
Potri.008G116700 Populus trichocarpa HOM05D004326 ORTHO05D004570 2.8e-09 64.3 47 59.6
RcHm_v2.0_Chr2g0163211 Rosa chinensis HOM05D004326 ORTHO05D004570 2.8e-09 64.3 44 61.4
THA.LOC109116167 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 2.8e-09 64.3 47 59.6
Carub.0002s1541 Capsella rubella HOM05D004326 ORTHO05D004570 3.7e-09 63.9 47 59.6
Migut.K00857 Erythranthe guttata HOM05D004326 ORTHO05D004570 3.7e-09 63.9 40 65.0
Potri.010G129600 Populus trichocarpa HOM05D004326 ORTHO05D004570 3.7e-09 63.9 47 59.6
CAN.G184.91 Capsicum annuum HOM05D004326 ORTHO05D004570 4.8e-09 63.5 47 57.4
Thhalv10015386m.g Eutrema salsugineum HOM05D004326 ORTHO05D004570 4.8e-09 63.5 39 69.2
TWI79G1601 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 6.3e-09 63.2 49 65.3
Prupe.1G305400 Prunus persica HOM05D004326 ORTHO05D004570 1.1e-08 62.4 46 60.9
TWI31G0110 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 1.1e-08 62.4 50 64.0
A10p23030 Brassica napus HOM05D004326 ORTHO05D004570 1.4e-08 62.0 36 72.2
BolC9t58947H Brassica oleracea HOM05D004326 ORTHO05D004570 1.4e-08 62.0 36 72.2
BraA10t44372Z Brassica rapa HOM05D004326 ORTHO05D004570 1.4e-08 62.0 36 72.2
Gohir.A09G046900 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.4e-08 62.0 49 57.1
Gohir.D09G047400 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.4e-08 62.0 49 57.1
Gorai.006G062700 Gossypium raimondii HOM05D004326 ORTHO05D004570 1.4e-08 62.0 49 57.1
Carub.0006s1421 Capsella rubella HOM05D004326 ORTHO05D004570 1.8e-08 61.6 36 69.4
THA.LOC109116985 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 1.8e-08 61.6 36 75.0
Manes.05G139100 Manihot esculenta HOM05D004326 ORTHO05D004570 2.4e-08 61.2 46 58.7
Oeu058414.1 Olea europaea HOM05D004326 ORTHO05D004570 2.4e-08 61.2 45 55.6
THA.LOC109116378 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 2.4e-08 61.2 36 75.0
TWI60G1416 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 3.1e-08 60.8 48 58.3
Migut.H00527 Erythranthe guttata HOM05D004326 ORTHO05D004570 4.1e-08 60.5 47 51.1
Glyma.10G129200 Glycine max HOM05D004326 ORTHO05D004570 4.1e-08 60.5 47 57.4
Lalb_Chr17g0341881 Lupinus albus HOM05D004326 ORTHO05D004570 4.1e-08 60.5 50 58.0
PGR083G2212 Punica granatum HOM05D004326 ORTHO05D004570 4.1e-08 60.5 49 55.1
MELO3C008521.2 Cucumis melo HOM05D004326 ORTHO05D004570 5.4e-08 60.1 51 56.9
Eucgr.G02348 Eucalyptus grandis HOM05D004326 ORTHO05D004570 5.4e-08 60.1 45 57.8
Lalb_Chr10g0099751 Lupinus albus HOM05D004326 ORTHO05D004570 7.0e-08 59.7 50 60.0
CARHR013620 Cardamine hirsuta HOM05D004326 ORTHO05D004570 9.1e-08 59.3 48 56.2
CAN.G497.3 Capsicum annuum HOM05D004326 ORTHO05D004570 1.2e-07 58.9 39 61.5
PSO478G3685 Papaver somniferum HOM05D004326 ORTHO05D004570 1.2e-07 58.9 49 57.1
AT5G16023 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 1.6e-07 58.5 45 62.2
ClCG05G012040 Citrullus lanatus HOM05D004326 ORTHO05D004570 1.6e-07 58.5 28 85.7
MD13G1046500 Malus domestica HOM05D004326 ORTHO05D004570 1.6e-07 58.5 47 57.4
MD16G1048200 Malus domestica HOM05D004326 ORTHO05D004570 1.6e-07 58.5 47 57.4
PGR102G0365 Punica granatum HOM05D004326 ORTHO05D004570 1.6e-07 58.5 49 61.2
THA.LOC109117262 Tarenaya hassleriana HOM05D004326 ORTHO05D004570 1.6e-07 58.5 36 69.4
BolC2t06734H Brassica oleracea HOM05D004326 ORTHO05D004570 2.0e-07 58.2 36 72.2
Carub.0001s1297 Capsella rubella HOM05D004326 ORTHO05D004570 2.0e-07 58.2 48 56.2
AL6G26900 Arabidopsis lyrata HOM05D004326 ORTHO05D004570 2.7e-07 57.8 45 60.0
AL1G24940 Arabidopsis lyrata HOM05D004326 ORTHO05D004570 3.5e-07 57.4 38 60.5
AT1G13245 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 3.5e-07 57.4 38 60.5
AT3G02493 Arabidopsis thaliana HOM05D004326 ORTHO05D004570 3.5e-07 57.4 41 61.0
Manes.06G072200 Manihot esculenta HOM05D004326 ORTHO05D004570 3.5e-07 57.4 51 54.9
PSO017G5195 Papaver somniferum HOM05D004326 ORTHO05D004570 3.5e-07 57.4 48 54.2
TWI81G0420 Tripterygium wilfordii HOM05D004326 ORTHO05D004570 3.5e-07 57.4 48 54.2
C02p08120 Brassica napus HOM05D004326 ORTHO05D004570 4.5e-07 57.0 36 69.4
CARHR197290 Cardamine hirsuta HOM05D004326 ORTHO05D004570 4.5e-07 57.0 36 69.4
Sed0007261 Sechium edule HOM05D004326 ORTHO05D004570 4.5e-07 57.0 39 69.2
A06p08510 Brassica napus HOM05D004326 ORTHO05D004570 5.9e-07 56.6 44 54.5
A08p32390 Brassica napus HOM05D004326 ORTHO05D004570 5.9e-07 56.6 44 54.5
C05p10110 Brassica napus HOM05D004326 ORTHO05D004570 5.9e-07 56.6 44 54.5
BolC5t29757H Brassica oleracea HOM05D004326 ORTHO05D004570 1.0e-06 55.8 38 60.5
BraA06t24046Z Brassica rapa HOM05D004326 ORTHO05D004570 1.0e-06 55.8 38 60.5
BraA08t35162Z Brassica rapa HOM05D004326 ORTHO05D004570 1.0e-06 55.8 38 60.5
Gohir.A11G006950 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.3e-06 55.5 45 51.1
Gohir.D11G006050 Gossypium hirsutum HOM05D004326 ORTHO05D004570 1.3e-06 55.5 45 51.1
Gorai.007G007300 Gossypium raimondii HOM05D004326 ORTHO05D004570 1.3e-06 55.5 45 51.1
C08p16040 Brassica napus HOM05D004326 ORTHO05D004570 1.7e-06 55.1 44 54.5
BolC8t49226H Brassica oleracea HOM05D004326 ORTHO05D004570 1.7e-06 55.1 38 60.5
ClCG03G009910 Citrullus lanatus HOM05D004326 ORTHO05D004570 1.7e-06 55.1 32 68.8
A02p03350 Brassica napus HOM05D004326 ORTHO05D004570 2.2e-06 54.7 36 66.7
BraA02t05306Z Brassica rapa HOM05D004326 ORTHO05D004570 2.2e-06 54.7 36 66.7
A03p32970 Brassica napus HOM05D004326 ORTHO05D004570 3.8e-06 53.9 36 66.7
C03p40100 Brassica napus HOM05D004326 ORTHO05D004570 3.8e-06 53.9 36 66.7
BolC3t16276H Brassica oleracea HOM05D004326 ORTHO05D004570 3.8e-06 53.9 36 66.7
BraA03t12465Z Brassica rapa HOM05D004326 ORTHO05D004570 3.8e-06 53.9 36 66.7
CARHR076480 Cardamine hirsuta HOM05D004326 ORTHO05D004570 3.8e-06 53.9 36 66.7
PSO063G2252 Papaver somniferum HOM05D004326 ORTHO05D004570 3.8e-06 53.9 30 80.0
AL3G11830 Arabidopsis lyrata HOM05D004326 ORTHO05D004570 8.5e-06 52.8 36 66.7
Migut.K01265 Erythranthe guttata HOM05D004326 ORTHO05D004570 8.5e-06 52.8 36 61.1
Glyma.09G227700 Glycine max HOM05D018086 ORTHO05D004570 8.5e-06 52.8 47 48.9
Glyma.12G009000 Glycine max HOM05D018086 ORTHO05D004570 8.5e-06 52.8 47 48.9
Glyma.12G187300 Glycine max HOM05D004326 ORTHO05D004570 8.5e-06 52.8 42 57.1


User provided reference genes

Program Settings