Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G065900 Manihot esculenta HOM05D002617 ORTHO05D009035 1.1e-284 982.6 515 100.0
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 5.4e-186 654.8 424 74.3
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 1.1e-181 640.6 498 68.5
CiPaw.09G147400 Carya illinoinensis HOM05D002617 ORTHO05D009035 4.4e-180 635.2 523 63.1
QL02p053130 Quercus lobata HOM05D002617 ORTHO05D009035 8.3e-179 630.9 519 65.1
Prupe.3G241200 Prunus persica HOM05D002617 ORTHO05D009035 2.3e-176 622.9 483 65.6
Cfa007963 Carpinus fangiana HOM05D002617 ORTHO05D009035 1.9e-175 619.8 539 63.8
TAR629G1601 Trochodendron aralioides HOM05D002617 ORTHO05D009035 4.3e-175 618.6 534 62.4
Sabra04G0077100 Salix brachista HOM05D002617 ORTHO05D009035 7.3e-175 617.8 533 63.0
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 1.2e-172 610.5 428 68.7
FvH4_6g45490 Fragaria vesca HOM05D002617 ORTHO05D009035 2.6e-172 609.4 522 62.3
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 5.8e-172 608.2 438 68.7
TWI53G1449 Tripterygium wilfordii HOM05D002617 ORTHO05D009035 4.1e-170 602.1 465 65.2
Hma1.2p1_0136F.1_g062000 Hydrangea macrophylla HOM05D002617 ORTHO05D009035 1.6e-169 600.1 475 65.7
Thecc.04G140600 Theobroma cacao HOM05D002617 ORTHO05D009035 7.8e-169 597.8 523 61.8
FAN05G4565 Fragaria x ananassa HOM05D002617 ORTHO05D009035 1.3e-168 597.0 522 60.3
Actinidia36305 Actinidia chinensis HOM05D002617 ORTHO05D009035 2.5e-167 592.8 517 61.5
Potri.004G104500 Populus trichocarpa HOM05D002617 ORTHO05D009035 9.5e-167 590.9 533 63.2
Rhsim10G0064400 Rhododendron simsii HOM05D002617 ORTHO05D009035 3.1e-165 585.9 527 60.0
RcHm_v2.0_Chr2g0163431 Rosa chinensis HOM05D002617 ORTHO05D009035 5.2e-165 585.1 552 57.4
Oeu043862.1 Olea europaea HOM05D002617 ORTHO05D009035 4.4e-164 582.0 465 63.0
Glyma.13G047800 Glycine max HOM05D002617 ORTHO05D009035 3.8e-163 578.9 426 67.6
Nn3g17671 Nelumbo nucifera HOM05D002617 ORTHO05D009035 1.9e-162 576.6 417 66.9
COL.COLO4_16208 Corchorus olitorius HOM05D002617 ORTHO05D009035 5.4e-162 575.1 538 58.9
Phvul.005G010600 Phaseolus vulgaris HOM05D002617 ORTHO05D009035 3.5e-161 572.4 426 65.5
PGR042G2862 Punica granatum HOM05D002617 ORTHO05D009035 1.9e-159 566.6 427 66.7
DCAR_011250 Daucus carota HOM05D002617 ORTHO05D009035 4.3e-159 565.5 425 66.4
Duzib151G0578 Durio zibethinus HOM05D002617 ORTHO05D009035 1.4e-157 560.5 482 63.1
CSS0020455 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D009035 1.8e-157 560.1 532 58.6
Psat1g062120 Pisum sativum HOM05D002617 ORTHO05D009035 1.8e-157 560.1 426 65.3
FAN14G1977 Fragaria x ananassa HOM05D002617 ORTHO05D009035 3.4e-156 555.8 517 59.0
Lj2g0019105 Lotus japonicus HOM05D002617 ORTHO05D009035 5.8e-156 555.1 426 64.6
Medtr6g016985 Medicago truncatula HOM05D002617 ORTHO05D009035 1.3e-155 553.9 423 65.7
Ca_14082_v3 Cicer arietinum L. HOM05D002617 ORTHO05D009035 1.2e-153 547.4 426 63.6
Cc07_g05000 Coffea canephora HOM05D002617 ORTHO05D009035 3.5e-153 545.8 467 60.8
CiPaw.09G147200 Carya illinoinensis HOM05D002617 ORTHO05D009035 1.1e-151 540.8 413 65.4
Gohir.A10G140200 Gossypium hirsutum HOM05D002617 ORTHO05D009035 1.9e-151 540.0 531 58.4
AUR62008950 Chenopodium quinoa HOM05D002617 ORTHO05D009035 9.0e-149 531.2 520 55.4
Peaxi162Scf00479g00211 Petunia axillaris HOM05D002617 ORTHO05D009035 9.0e-149 531.2 428 60.3
Gohir.D10G126600 Gossypium hirsutum HOM05D002617 ORTHO05D009035 5.8e-148 528.5 530 57.0
Lj4A130G15 Lonicera japonica HOM05D002617 ORTHO05D009035 2.9e-147 526.2 538 55.6
Aqoxy3G00430 Aquilegia oxysepala HOM05D002617 ORTHO05D009035 3.8e-147 525.8 438 62.1
Sc11g0008110 Simmondsia chinensis HOM05D002617 ORTHO05D009035 2.7e-145 519.6 425 60.7
Haze_14108 Corylus avellana HOM05D002617 ORTHO05D009035 3.9e-144 515.8 422 62.1
Ah.06g191010 Amaranthus hybridus HOM05D002617 ORTHO05D009035 7.4e-143 511.5 417 61.9
Ah.06g191000 Amaranthus hybridus HOM05D002617 ORTHO05D009035 1.2e-140 504.2 417 61.4
Gorai.011G139500 Gossypium raimondii HOM05D002617 ORTHO05D009035 1.5e-140 503.8 530 55.5
HPP92_020267 Vanilla planifolia HOM05D002617 ORTHO05D009035 3.4e-140 502.7 418 57.4
arahy.Tifrunner.gnm1.ann1.7SH6PF Arachis hypogaea HOM05D002617 ORTHO05D009035 1.1e-138 497.7 443 58.2
PSO478G1567 Papaver somniferum HOM05D002617 ORTHO05D009035 2.5e-138 496.5 396 61.9
PSO832G3224 Papaver somniferum HOM05D002617 ORTHO05D009035 3.2e-138 496.1 396 62.1
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 5.5e-138 495.4 422 60.4
arahy.Tifrunner.gnm1.ann1.37DWZ9 Arachis hypogaea HOM05D002617 ORTHO05D009035 3.5e-137 492.7 428 59.3
FAN09G3897 Fragaria x ananassa HOM05D002617 ORTHO05D009035 3.5e-137 492.7 519 53.6
EL10Ac2g04621 Beta vulgaris HOM05D002617 ORTHO05D009035 1.8e-133 480.3 418 59.3
Nitab4.5_0000612g0170 Nicotiana tabacum HOM05D002617 ORTHO05D009035 1.8e-133 480.3 468 53.8
PSO013G0088 Papaver somniferum HOM05D002617 ORTHO05D009035 2.4e-133 479.9 447 56.2
MBI16_g23736_MAGBIO Magnolia biondii HOM05D002617 ORTHO05D009035 1.7e-131 473.8 418 56.7
Sopen03g009540 Solanum pennellii HOM05D002617 ORTHO05D009035 2.5e-130 469.9 480 53.5
ECA238G3370 Erigeron canadensis HOM05D002617 ORTHO05D009035 6.3e-126 455.3 428 56.3
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 6.3e-126 455.3 433 57.3
Lsat_1_v5_gn_2_86600 Lactuca sativa HOM05D002617 ORTHO05D009035 1.4e-125 454.1 453 52.8
Eucgr.J01458 Eucalyptus grandis HOM05D002617 ORTHO05D009035 9.0e-125 451.4 555 47.6
AT5G16020 Arabidopsis thaliana HOM05D002617 ORTHO05D009035 1.2e-124 451.1 422 54.5
AL6G26890 Arabidopsis lyrata HOM05D002617 ORTHO05D009035 1.7e-123 447.2 426 53.8
Solyc03g045080.3 Solanum lycopersicum HOM05D002617 ORTHO05D009035 5.0e-123 445.7 411 57.9
TPR.G9672 Trifolium pratense HOM05D002617 ORTHO05D009035 4.2e-122 442.6 319 66.1
CARHR197300 Cardamine hirsuta HOM05D002617 ORTHO05D009035 1.2e-121 441.0 424 53.5
Carub.0006s1420 Capsella rubella HOM05D002617 ORTHO05D009035 2.1e-121 440.3 424 52.4
Glyma.14G157500 Glycine max HOM05D002617 ORTHO05D009035 2.1e-121 440.3 327 64.2
Nitab4.5_0003461g0060 Nicotiana tabacum HOM05D002617 ORTHO05D009035 2.0e-119 433.7 470 50.6
SHI30168 Sapria himalayana HOM05D002617 ORTHO05D009035 5.7e-119 432.2 438 53.0
BcaB08g36879 Brassica carinata HOM05D002617 ORTHO05D009035 7.4e-119 431.8 426 53.1
A10p23040 Brassica napus HOM05D002617 ORTHO05D009035 7.4e-119 431.8 413 53.8
BraA10t44373Z Brassica rapa HOM05D002617 ORTHO05D009035 7.4e-119 431.8 413 53.8
THA.LOC104827464 Tarenaya hassleriana HOM05D002617 ORTHO05D009035 1.7e-118 430.6 351 61.5
Thhalv10015867m.g Eutrema salsugineum HOM05D002617 ORTHO05D009035 2.4e-117 426.8 418 51.4
MD09G1082500 Malus domestica HOM05D002617 ORTHO05D009035 6.9e-117 425.2 332 62.7
SalBow1G3878 Salvia bowleyana HOM05D002617 ORTHO05D009035 6.9e-117 425.2 375 60.8
C09p61030 Brassica napus HOM05D002617 ORTHO05D009035 2.9e-115 419.9 413 53.0
BolC9t58948H Brassica oleracea HOM05D002617 ORTHO05D009035 3.8e-115 419.5 413 53.0
Cpa.g.sc179.39 Carica papaya HOM05D002617 ORTHO05D009035 3.8e-115 419.5 548 47.8
ATR0820G227 Amborella trichopoda HOM05D002617 ORTHO05D009035 1.1e-114 417.9 426 48.4
BcaC04g18915 Brassica carinata HOM05D002617 ORTHO05D009035 2.5e-114 416.8 413 52.5
Zm00001eb161540 Zea mays HOM05D002617 ORTHO05D009035 1.6e-113 414.1 433 47.8
HanXRQChr14g0452391 Helianthus annuus HOM05D002617 ORTHO05D009035 6.3e-110 402.1 424 49.8
PGSC0003DMG400018767 Solanum tuberosum HOM05D002617 ORTHO05D009035 1.9e-106 390.6 442 50.2
Aa31LG11G13590 Aethionema arabicum HOM05D002617 ORTHO05D009035 3.2e-106 389.8 423 48.7
CAN.G153.15 Capsicum annuum HOM05D002617 ORTHO05D009035 1.4e-104 384.4 462 48.9
AUR62014551 Chenopodium quinoa HOM05D002617 ORTHO05D009035 4.1e-101 372.9 358 54.7
Atru.chr8.789 Acer truncatum HOM05D002617 ORTHO05D009035 1.5e-98 364.4 250 68.4
vmacro05580 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 9.4e-98 361.7 236 72.9
Os01g0605400 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D009035 5.9e-92 342.4 426 43.7
CDE06G1275 Ceratophyllum demersum HOM05D002617 ORTHO05D009035 1.3e-91 341.3 391 45.8
CANSAT56G0222 Cannabis sativa HOM05D002617 ORTHO05D009035 3.2e-90 336.7 258 63.2
FAN02G3008 Fragaria x ananassa HOM05D002617 ORTHO05D009035 4.0e-88 329.7 384 52.9
unitig_899.g15127 Utricularia gibba HOM05D002617 ORTHO05D009035 1.2e-87 328.2 509 41.3
Lalb_Chr10g0092311 Lupinus albus HOM05D002617 ORTHO05D009035 2.2e-86 323.9 255 60.8
CANSAT56G3033 Cannabis sativa HOM05D002617 ORTHO05D009035 3.7e-78 296.6 288 58.3
CiPaw.09G170800 Carya illinoinensis HOM05D002617 ORTHO05D009035 4.9e-70 269.6 225 65.8
FAN02G3888 Fragaria x ananassa HOM05D002617 ORTHO05D009035 2.0e-63 247.7 157 72.6
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 3.5e-60 236.9 148 83.1
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 3.9e-59 233.4 145 83.4
vmacro05579 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 5.4e-53 213.0 293 51.9
arahy.Tifrunner.gnm1.ann1.3A0B2Z Arachis hypogaea HOM05D002617 ORTHO05D009035 1.6e-52 211.5 190 59.5
MSTRG.23827 Avicennia marina HOM05D002617 ORTHO05D009035 1.8e-48 198.0 262 49.2
Actinidia18118 Actinidia chinensis HOM05D002617 ORTHO05D009035 1.6e-41 174.9 117 66.7
CANSAT56G4171 Cannabis sativa HOM05D002617 ORTHO05D009035 4.4e-39 166.8 106 69.8
Lalb_Chr10g0092331 Lupinus albus HOM05D002617 ORTHO05D009035 3.4e-23 114.0 101 63.4
Nn4g26093 Nelumbo nucifera HOM05D001650 ORTHO05D001592 2.5e-21 107.8 91 64.8
Lalb_Chr10g0092321 Lupinus albus HOM05D002617 ORTHO05D009035 6.3e-17 93.2 68 66.2
TAR705G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 5.8e-15 86.7 59 66.1
SMO116G0487 Selaginella moellendorffii HOM05D002617 ORTHO05D009035 2.5e-13 81.3 114 33.3
CBR_g48653 Chara braunii HOM05D001394 ORTHO05D001237 2.8e-09 67.8 109 33.9
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 1.8e-08 65.1 41 73.2
TAR629G3114 Trochodendron aralioides HOM05D004526 ORTHO05D002794 1.7e-06 58.5 49 61.2


User provided reference genes

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