Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 1.6e-170 602.8 346 100.0
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 1.0e-124 450.7 347 72.9
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 1.0e-124 450.7 347 72.9
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 1.3e-122 443.7 353 71.7
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 3.8e-119 432.2 353 72.0
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 1.6e-117 426.8 347 72.6
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 2.6e-115 419.5 351 68.4
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 4.4e-115 418.7 347 70.0
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 3.7e-114 415.6 350 69.4
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 6.3e-114 414.8 351 68.9
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 1.8e-113 413.3 349 68.8
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 1.8e-113 413.3 347 69.7
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 4.1e-113 412.1 352 69.6
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 5.3e-113 411.8 351 68.4
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 7.7e-112 407.9 349 68.5
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 7.7e-112 407.9 350 68.3
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 2.2e-111 406.4 349 67.9
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 5.0e-111 405.2 349 70.2
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 6.5e-111 404.8 349 67.0
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 8.5e-111 404.4 353 68.3
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.5e-110 403.7 353 68.3
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 9.4e-110 401.0 353 65.4
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 1.6e-109 400.2 417 57.8
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 2.7e-109 399.4 352 66.8
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 6.1e-109 398.3 364 69.0
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.8e-108 396.7 352 66.5
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 8.8e-108 394.4 349 66.2
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 3.3e-107 392.5 351 67.0
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 1.3e-106 390.6 346 66.5
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 8.2e-106 387.9 351 63.5
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 8.2e-106 387.9 352 69.3
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 2.4e-105 386.3 355 66.2
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 2.4e-105 386.3 340 66.2
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 5.3e-105 385.2 357 63.9
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 7.0e-105 384.8 347 66.3
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 1.6e-104 383.6 350 65.4
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 3.5e-104 382.5 353 64.9
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 7.7e-104 381.3 362 64.4
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 1.0e-103 380.9 348 64.9
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 1.0e-103 380.9 349 63.0
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 7.2e-102 374.8 355 62.5
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 1.2e-101 374.0 354 63.6
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 1.2e-101 374.0 349 63.0
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 2.1e-101 373.2 349 62.8
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 2.1e-101 373.2 353 62.6
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 3.6e-101 372.5 354 62.4
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 6.1e-101 371.7 350 63.1
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 8.0e-101 371.3 349 63.0
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 1.8e-100 370.2 349 62.5
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 8.8e-100 367.9 349 62.5
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 2.0e-99 366.7 352 62.8
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 2.6e-99 366.3 352 62.5
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 3.4e-99 365.9 367 61.0
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 3.4e-99 365.9 350 61.4
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 5.7e-99 365.2 355 62.3
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 7.5e-99 364.8 349 61.9
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 2.2e-98 363.2 357 60.5
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 8.3e-98 361.3 352 62.5
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 8.3e-98 361.3 352 62.5
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 5.4e-97 358.6 351 62.1
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 5.4e-97 358.6 350 63.7
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 1.2e-96 357.5 340 63.5
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.6e-96 357.1 349 62.5
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 2.0e-96 356.7 350 61.4
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 3.5e-96 355.9 348 61.5
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 7.7e-96 354.8 351 61.8
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 1.0e-95 354.4 348 61.5
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 1.0e-95 354.4 349 61.9
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 1.3e-95 354.0 349 61.6
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 1.3e-95 354.0 351 61.8
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 5.0e-95 352.1 348 59.8
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 6.6e-95 351.7 349 61.3
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 6.6e-95 351.7 349 61.3
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 8.6e-95 351.3 353 60.3
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 8.6e-95 351.3 395 58.0
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 7.2e-94 348.2 347 61.7
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 1.6e-93 347.1 349 61.3
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 1.6e-93 347.1 349 61.3
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 1.6e-93 347.1 352 59.1
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 4.0e-92 342.4 351 58.1
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 4.4e-91 339.0 364 58.8
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 9.8e-91 337.8 351 57.0
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 9.8e-91 337.8 348 60.1
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 3.1e-89 332.8 336 59.5
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 9.2e-89 331.3 301 63.8
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 1.2e-88 330.9 349 58.5
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 8.6e-87 324.7 335 59.4
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 1.9e-86 323.6 341 59.5
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 9.5e-86 321.2 350 58.9
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 2.1e-85 320.1 354 57.9
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 1.0e-84 317.8 339 57.5
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 4.0e-84 315.8 371 54.7
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 7.3e-78 295.0 375 50.1
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 1.1e-76 291.2 352 53.7
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 8.9e-76 288.1 348 51.4
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 9.8e-75 284.6 251 65.7
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 1.4e-73 280.8 349 55.3
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 1.1e-70 271.2 350 52.6
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 1.4e-60 237.7 232 57.3
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 7.6e-59 231.9 329 47.7
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.0e-55 221.5 208 61.1
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 1.1e-54 218.0 316 49.1
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 5.6e-54 215.7 231 58.0
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 2.4e-52 210.3 232 55.6
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 8.7e-47 191.8 165 68.5
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 1.9e-46 190.7 135 77.0
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 4.8e-45 186.0 196 58.2
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 3.9e-39 166.4 132 69.7
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 5.1e-39 166.0 201 52.7
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 7.6e-35 152.1 105 77.1
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 4.9e-34 149.4 298 37.2
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 6.4e-34 149.1 234 43.6
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 1.9e-33 147.5 378 34.4
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 1.6e-32 144.4 212 47.6
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 2.7e-32 143.7 236 41.5
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 1.1e-30 138.3 96 75.0
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 1.8e-28 131.0 289 37.0
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 7.6e-27 125.6 218 45.0
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 2.7e-24 117.1 371 32.6
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 2.5e-22 110.5 100 65.0
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 1.3e-21 108.2 314 34.1
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 1.8e-20 104.4 92 59.8
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 3.1e-20 103.6 71 78.9
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 2.0e-19 100.9 274 37.2
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 3.6e-16 90.1 123 50.4
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 3.9e-15 86.7 74 67.6
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 6.7e-15 85.9 96 47.9
SEGI_18448 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 2.8e-13 80.5 226 36.7
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 1.5e-11 74.7 85 56.5
RcHm_v2.0_Chr2g0163651 Rosa chinensis HOM05D005714 ORTHO05D006812 5.0e-10 69.7 78 53.8
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 5.0e-10 69.7 46 80.4
FAN09G3753 Fragaria x ananassa HOM05D001104 ORTHO05D008876 2.7e-08 63.9 59 55.9
BcaB08g36868 Brassica carinata HOM05D005714 ORTHO05D006812 6.7e-07 59.3 121 36.4
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 9.7e-06 55.5 101 44.6


User provided reference genes

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