Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1519.6 795 100.0
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1335.5 798 87.0
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1261.5 802 82.0
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1244.6 800 81.6
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1236.1 798 80.1
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1229.5 805 79.6
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1229.5 796 80.3
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1224.5 794 79.8
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1214.5 819 78.0
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1213.4 798 78.7
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1211.8 779 81.0
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1210.7 798 78.9
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1209.9 807 79.3
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 0.0e+00 1202.2 813 77.4
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1199.1 797 78.2
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1198.0 815 78.0
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 0.0e+00 1191.0 797 78.8
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1190.3 801 77.5
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 0.0e+00 1190.3 794 78.1
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1187.9 790 77.8
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 0.0e+00 1184.5 796 77.8
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1179.5 804 77.1
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 0.0e+00 1176.8 789 78.3
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 0.0e+00 1171.0 802 76.1
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 0.0e+00 1170.2 869 72.4
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 0.0e+00 1169.8 803 75.8
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1169.5 804 76.7
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1169.5 789 77.8
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 0.0e+00 1168.3 756 80.6
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 0.0e+00 1166.4 897 70.3
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1164.8 806 75.9
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1164.4 803 76.7
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 0.0e+00 1158.3 807 75.3
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 0.0e+00 1154.8 797 75.4
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 0.0e+00 1149.8 843 71.6
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 0.0e+00 1149.0 804 75.5
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1147.5 799 75.5
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1146.7 803 75.7
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 0.0e+00 1146.3 800 74.4
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1144.8 799 75.2
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 0.0e+00 1142.1 789 74.8
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1141.7 793 74.7
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 0.0e+00 1141.3 794 75.2
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 0.0e+00 1140.6 846 71.7
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 0.0e+00 1139.4 793 75.3
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 0.0e+00 1138.6 797 75.0
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 0.0e+00 1137.5 805 73.2
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 0.0e+00 1135.9 801 75.2
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 0.0e+00 1131.3 798 75.1
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 0.0e+00 1129.8 798 74.9
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 0.0e+00 1129.8 795 73.2
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 0.0e+00 1120.9 805 74.9
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 0.0e+00 1118.2 787 74.3
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 0.0e+00 1116.3 795 72.5
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 0.0e+00 1115.5 798 73.7
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 0.0e+00 1112.4 789 73.5
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 0.0e+00 1112.1 788 74.2
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 0.0e+00 1110.9 825 71.6
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 0.0e+00 1109.0 808 72.9
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 0.0e+00 1107.8 793 72.8
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 0.0e+00 1107.8 673 84.8
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 0.0e+00 1104.7 808 72.4
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1103.6 787 74.0
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 0.0e+00 1098.6 808 71.4
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 0.0e+00 1096.3 788 72.8
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 0.0e+00 1095.1 809 71.3
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1092.4 796 71.9
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 0.0e+00 1091.6 784 72.1
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 0.0e+00 1091.3 792 72.1
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1087.4 794 72.4
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 0.0e+00 1086.6 785 73.2
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1086.6 762 74.9
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 0.0e+00 1085.9 784 72.7
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 0.0e+00 1085.9 784 72.7
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 0.0e+00 1085.1 798 71.6
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1081.6 805 70.8
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 0.0e+00 1078.9 647 85.0
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 0.0e+00 1077.8 784 72.4
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 0.0e+00 1077.8 784 72.4
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 0.0e+00 1077.4 784 72.4
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 5.4e-312 1073.9 798 70.8
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 1.1e-311 1073.2 792 70.6
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 6.5e-311 1070.5 802 71.1
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 8.2e-311 1070.1 788 70.8
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 2.7e-309 1065.1 797 70.8
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 1.9e-307 1058.9 798 70.1
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 7.3e-307 1057.0 794 70.0
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 4.0e-305 1051.2 647 83.5
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 8.9e-305 1050.0 647 83.6
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 4.9e-303 1044.3 784 69.9
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 2.4e-302 1042.0 790 69.1
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 5.0e-300 1034.2 799 71.0
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 3.3e-299 1031.6 802 68.1
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 2.8e-298 1028.5 783 69.9
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 8.1e-290 1000.3 785 68.9
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 1.9e-286 989.2 783 67.9
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 1.3e-284 983.0 783 68.3
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 2.3e-284 982.2 795 67.2
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 1.2e-282 976.5 782 67.0
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 2.1e-282 975.7 792 65.5
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 3.4e-280 968.4 804 65.7
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 3.4e-280 968.4 837 62.7
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 1.3e-279 966.5 809 62.9
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 3.2e-278 961.8 784 66.2
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 6.4e-271 937.6 779 65.9
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 3.9e-268 928.3 785 65.7
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 9.3e-262 907.1 819 60.3
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 7.9e-261 904.0 816 61.5
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 8.7e-260 900.6 794 60.1
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 3.7e-258 895.2 716 69.4
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.1e-254 883.6 785 61.0
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 1.1e-235 820.5 641 69.4
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 1.3e-226 790.4 641 66.0
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 2.6e-211 739.6 480 80.0
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 4.4e-211 738.8 807 51.8
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 3.1e-188 662.9 856 46.5
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 3.1e-188 662.9 856 46.5
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 7.8e-184 648.3 875 44.9
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.1e-180 637.9 621 58.1
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 6.6e-175 618.6 532 64.7
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.8e-173 613.2 851 44.8
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 2.6e-171 606.7 459 68.2
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 5.1e-167 592.4 655 51.3
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 7.3e-166 588.6 837 43.8
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 8.9e-164 581.6 589 55.7
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 3.5e-160 569.7 434 67.5
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 5.8e-147 525.8 401 71.1
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 2.5e-118 430.6 604 47.0
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 7.7e-107 392.5 620 45.2
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 8.5e-90 335.9 213 83.6
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 5.6e-81 306.6 766 32.8
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 3.0e-79 300.8 291 60.5
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 1.2e-75 288.9 207 73.4
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 7.3e-73 279.6 197 74.1
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 1.2e-72 278.9 197 74.1
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 1.2e-72 278.9 197 74.1
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 2.4e-68 264.6 211 66.4
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 2.8e-64 251.1 239 58.6
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 5.8e-62 243.4 476 39.1
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 3.2e-60 237.7 451 38.6
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 7.1e-52 209.9 146 76.0
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 3.5e-51 207.6 119 80.7
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 2.6e-46 191.4 803 27.4
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.1e-40 171.8 204 50.5
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.2e-37 161.8 87 79.3
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.2e-37 161.8 87 79.3
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 4.2e-36 157.5 92 79.3
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.6e-35 154.1 361 32.1
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.8e-32 144.8 130 58.5
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 1.2e-30 139.4 142 52.8
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 2.8e-24 118.2 75 84.0
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 1.8e-23 115.5 89 59.6
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.1e-20 106.3 108 51.9
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 1.9e-20 105.5 71 70.4
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.9e-20 105.5 113 46.0
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.5e-20 104.0 123 51.2
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 2.1e-19 102.1 69 69.6
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 3.9e-18 97.8 57 87.7
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.1e-15 88.2 85 52.9
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 2.2e-13 82.0 109 47.7
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 5.0e-13 80.9 57 66.7
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 5.5e-12 77.4 77 54.5
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 7.9e-11 73.6 52 78.8
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 3.0e-10 71.6 77 51.9
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 1.5e-09 69.3 50 78.0
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 1.5e-09 69.3 76 55.3
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 4.3e-09 67.8 51 74.5
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 9.7e-09 66.6 137 37.2
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 3.7e-08 64.7 65 60.0
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 6.9e-07 60.5 247 28.7
Lsat_1_v5_gn_6_82700 Lactuca sativa HOM05D003991 ORTHO05D232831 9.1e-07 60.1 73 43.8


User provided reference genes

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