Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 1.1e-124 449.9 218 100.0
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 2.4e-111 405.6 218 87.2
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 2.8e-107 392.1 218 83.0
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 4.9e-104 381.3 218 80.3
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 1.8e-103 379.4 218 79.8
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 9.2e-103 377.1 218 80.3
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 3.0e-101 372.1 218 76.6
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 3.9e-101 371.7 218 78.9
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 5.0e-101 371.3 214 79.4
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 1.5e-100 369.8 218 78.9
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 1.5e-100 369.8 218 78.9
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 1.9e-100 369.4 217 77.9
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 2.5e-100 369.0 217 77.4
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 3.3e-100 368.6 216 76.9
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 4.3e-100 368.2 218 78.0
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 3.6e-99 365.2 217 78.3
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 3.6e-99 365.2 217 78.8
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 6.2e-99 364.4 218 78.0
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 3.1e-98 362.1 218 77.5
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 8.9e-98 360.5 217 75.1
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 7.5e-97 357.5 220 76.8
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 1.1e-95 353.6 217 72.4
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 1.3e-93 346.7 219 74.0
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 1.3e-93 346.7 217 71.0
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 1.7e-93 346.3 218 73.4
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 3.9e-93 345.1 213 70.4
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 5.0e-93 344.7 213 71.4
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 5.0e-93 344.7 213 70.4
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 6.6e-93 344.4 217 72.4
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 8.6e-93 344.0 212 74.1
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 8.6e-93 344.0 213 70.4
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 3.3e-92 342.0 215 70.2
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 4.3e-92 341.7 219 72.6
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 5.6e-92 341.3 213 71.8
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 1.6e-91 339.7 218 71.1
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 4.7e-91 338.2 213 70.9
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 1.1e-90 337.0 218 71.1
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 1.4e-90 336.7 214 70.6
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 1.8e-90 336.3 214 71.0
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 4.0e-90 335.1 215 72.1
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 5.2e-90 334.7 218 70.2
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 5.2e-90 334.7 218 69.7
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 6.8e-90 334.3 219 71.2
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 6.8e-90 334.3 214 71.0
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 2.6e-89 332.4 208 73.1
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 3.4e-89 332.0 218 68.3
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 3.4e-89 332.0 217 70.0
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 3.4e-89 332.0 218 68.8
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 5.8e-89 331.3 218 67.9
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 7.5e-89 330.9 215 71.2
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.3e-88 330.1 214 69.2
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 1.3e-88 330.1 213 72.3
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 1.7e-88 329.7 217 68.2
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 1.7e-88 329.7 219 69.9
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.2e-88 329.3 214 71.0
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 3.7e-88 328.6 214 69.2
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 4.9e-88 328.2 219 68.9
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 6.4e-88 327.8 216 68.5
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 1.1e-87 327.0 218 68.3
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 1.1e-87 327.0 217 70.0
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.4e-87 326.6 248 61.7
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 1.9e-87 326.2 213 72.8
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 3.2e-87 325.5 218 69.7
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 3.2e-87 325.5 214 69.2
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 4.1e-87 325.1 219 68.9
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 5.4e-87 324.7 211 70.1
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 1.2e-86 323.6 218 67.9
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 1.2e-86 323.6 210 72.9
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 1.2e-86 323.6 214 68.7
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 1.2e-86 323.6 210 68.6
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 1.6e-86 323.2 213 70.9
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 4.6e-86 321.6 218 67.0
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 6.0e-86 321.2 218 66.1
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 7.8e-86 320.9 218 67.0
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 7.8e-86 320.9 218 66.5
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 1.0e-85 320.5 218 65.6
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 1.0e-85 320.5 218 66.5
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 2.3e-85 319.3 218 66.5
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 3.0e-85 318.9 218 66.1
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 3.9e-85 318.5 218 66.5
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 3.9e-85 318.5 218 66.5
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 5.1e-85 318.2 218 66.5
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 6.6e-85 317.8 218 67.9
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 7.3e-84 314.3 217 65.9
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 2.1e-83 312.8 218 65.6
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 6.2e-83 311.2 210 68.6
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 1.1e-82 310.5 217 66.8
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.5e-81 306.6 211 66.4
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 2.6e-81 305.8 211 65.4
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 4.4e-81 305.1 215 67.0
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.2e-80 302.8 218 64.7
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 4.9e-80 301.6 213 63.8
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 6.4e-80 301.2 215 62.3
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 1.9e-79 299.7 213 63.4
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.4e-79 299.3 204 68.6
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 9.2e-79 297.4 217 65.0
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 4.6e-78 295.0 219 60.7
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 1.0e-77 293.9 191 70.7
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 3.0e-77 292.4 193 71.5
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 7.3e-76 287.7 217 61.3
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.2e-75 284.6 184 69.6
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 3.1e-74 282.3 198 65.7
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 3.1e-74 282.3 175 73.7
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 7.6e-73 277.7 207 56.5
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 6.4e-72 274.6 198 65.2
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 1.1e-71 273.9 204 58.8
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 1.5e-68 263.5 209 55.0
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.5e-68 262.7 196 64.8
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 1.6e-67 260.0 204 57.4
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 1.1e-66 257.3 204 58.3
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.9e-64 249.2 159 71.1
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 7.1e-63 244.6 143 75.5
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 7.1e-63 244.6 214 49.1
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 1.3e-61 240.4 146 69.2
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 2.3e-61 239.6 212 53.3
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 1.6e-59 233.4 212 51.4
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 2.8e-59 232.6 144 71.5
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 2.6e-57 226.1 131 75.6
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.4e-56 221.5 213 49.3
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 2.7e-54 216.1 189 51.9
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.5e-52 210.3 231 50.6
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 9.6e-52 207.6 211 47.4
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 9.6e-52 207.6 126 72.2
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 6.9e-50 201.4 171 53.8
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 1.0e-48 197.6 199 50.8
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 7.4e-44 181.4 163 49.1
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 5.0e-40 168.7 110 72.7
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.4e-39 167.2 207 41.5
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 1.6e-38 163.7 110 67.3
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 1.8e-29 133.7 230 36.5
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 8.8e-29 131.3 78 71.8
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 3.7e-27 125.9 139 47.5
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 1.5e-25 120.6 208 32.7
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 7.7e-25 118.2 77 72.7
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.3e-24 117.5 72 73.6
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 7.2e-23 111.7 209 33.0
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 2.3e-21 106.7 66 69.7
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 2.0e-20 103.6 116 46.6
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 2.6e-20 103.2 116 46.6
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 2.6e-20 103.2 116 46.6
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 7.4e-20 101.7 218 29.4
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 7.0e-18 95.1 210 30.0
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.9e-15 87.0 56 67.9
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 2.5e-15 86.7 84 52.4
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 1.0e-13 81.3 201 29.4
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.4e-13 80.9 50 72.0
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 1.8e-13 80.5 177 29.9
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 4.0e-13 79.3 109 42.2
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 4.8e-11 72.4 47 66.0
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 1.0e-08 64.7 40 67.5
PRCOL_00001065 Prasinoderma coloniale HOM05D004605 ORTHO05D005804 6.5e-08 62.0 147 29.3
Cre10.g464500 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 1.1e-07 61.2 220 23.6
BcaC01g05772 Brassica carinata HOM05D004605 ORTHO05D032242 1.2e-06 57.8 84 42.9
BolC3t14636H Brassica oleracea HOM05D004605 ORTHO05D032242 3.6e-06 56.2 84 41.7
CAN.G1148.3 Capsicum annuum HOM05D001556 ORTHO05D001505 3.6e-06 56.2 59 52.5


User provided reference genes

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