Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G049400 Manihot esculenta HOM05D004089 ORTHO05D004687 2.5e-159 565.5 303 100.0
Manes.01G100800 Manihot esculenta HOM05D004089 ORTHO05D004687 4.9e-94 348.6 301 67.1
Potri.004G102800 Populus trichocarpa HOM05D004089 ORTHO05D004687 4.4e-63 245.7 309 51.5
Sabra04G0077800 Salix brachista HOM05D004089 ORTHO05D004687 3.5e-60 236.1 311 49.8
Haze_14490 Corylus avellana HOM05D004089 ORTHO05D004687 9.9e-55 218.0 301 45.8
QL02p084965 Quercus lobata HOM05D004089 ORTHO05D004687 1.3e-54 217.6 312 43.9
CiPaw.03G021500 Carya illinoinensis HOM05D004089 ORTHO05D004687 2.1e-49 200.3 324 42.9
TAR629G0233 Trochodendron aralioides HOM05D004089 ORTHO05D004687 6.9e-48 195.3 330 43.3
Dinv11500 Davidia involucrata HOM05D001066 ORTHO05D000891 5.8e-47 192.2 280 43.2
Thecc.04G088100 Theobroma cacao HOM05D004089 ORTHO05D004687 9.9e-47 191.4 306 42.8
Duzib264G0571 Durio zibethinus HOM05D004089 ORTHO05D004687 1.9e-45 187.2 293 43.0
GSVIVG01011469001 Vitis vinifera HOM05D004089 ORTHO05D004687 1.9e-45 187.2 310 40.0
CSS0037629 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 5.4e-45 185.7 288 39.9
CSS0014802 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 7.9e-44 181.8 288 39.9
QL10p017912 Quercus lobata HOM05D004089 ORTHO05D004687 6.7e-43 178.7 331 37.5
Thecc.03G094700 Theobroma cacao HOM05D004089 ORTHO05D004687 6.7e-43 178.7 328 38.7
Aqoxy3G03505 Aquilegia oxysepala HOM05D004089 ORTHO05D004687 4.3e-42 176.0 329 39.2
Haze_07654 Corylus avellana HOM05D004089 ORTHO05D004687 7.4e-42 175.3 305 38.4
Cfa019278 Carpinus fangiana HOM05D004089 ORTHO05D004687 1.3e-41 174.5 305 38.4
Duzib068G1131 Durio zibethinus HOM05D004089 ORTHO05D004687 4.8e-41 172.6 327 35.5
Manes.14G082100 Manihot esculenta HOM05D004089 ORTHO05D004687 4.8e-41 172.6 310 36.8
Phvul.003G187900 Phaseolus vulgaris HOM05D004089 ORTHO05D004687 8.1e-41 171.8 324 36.7
MSTRG.4442 Avicennia marina HOM05D004089 ORTHO05D004687 1.4e-40 171.0 317 35.0
Lj4g0011676 Lotus japonicus HOM05D004089 ORTHO05D004687 1.4e-40 171.0 330 34.8
Ciclev10020945m.g Citrus clementina HOM05D004089 ORTHO05D004687 1.8e-40 170.6 290 39.7
Duzib205G1783 Durio zibethinus HOM05D004089 ORTHO05D004687 1.8e-40 170.6 327 37.3
CiPaw.12G011700 Carya illinoinensis HOM05D004089 ORTHO05D004687 2.4e-40 170.2 314 36.9
Prupe.5G198800 Prunus persica HOM05D004089 ORTHO05D004687 6.9e-40 168.7 333 37.5
TPR.G2017 Trifolium pratense HOM05D004089 ORTHO05D004687 6.9e-40 168.7 298 38.3
Manes.06G089200 Manihot esculenta HOM05D004089 ORTHO05D004687 9.0e-40 168.3 328 34.5
COL.COLO4_00682 Corchorus olitorius HOM05D004089 ORTHO05D004687 1.2e-39 167.9 327 36.4
Glyma.17G102700 Glycine max HOM05D004089 ORTHO05D004687 2.0e-39 167.2 323 35.3
CSS0014968 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 2.6e-39 166.8 292 38.4
VMungo1215G0778 Vigna mungo HOM05D004089 ORTHO05D004687 3.4e-39 166.4 324 36.1
Dinv10661 Davidia involucrata HOM05D004089 ORTHO05D004687 4.5e-39 166.0 307 38.8
Atru.chr8.335 Acer truncatum HOM05D004089 ORTHO05D004687 7.6e-39 165.2 277 40.4
Glyma.05G024600 Glycine max HOM05D004089 ORTHO05D004687 9.9e-39 164.9 323 35.3
TAR371G1138 Trochodendron aralioides HOM05D004089 ORTHO05D004687 2.2e-38 163.7 282 41.8
MSTRG.11370 Avicennia marina HOM05D004089 ORTHO05D004687 3.8e-38 162.9 318 33.3
MBI19_g43436_MAGBIO Magnolia biondii HOM05D004089 ORTHO05D004687 4.9e-38 162.5 316 36.4
Atru.chr9.325 Acer truncatum HOM05D004089 ORTHO05D004687 6.4e-38 162.2 277 37.9
Oeu047272.1 Olea europaea HOM05D004089 ORTHO05D004687 1.1e-37 161.4 310 36.8
Medtr4g109020 Medicago truncatula HOM05D004089 ORTHO05D004687 1.9e-37 160.6 304 35.5
PSO017G6425 Papaver somniferum HOM05D004089 ORTHO05D004687 2.4e-37 160.2 295 39.0
ClCG04G012070 Citrullus lanatus HOM05D004089 ORTHO05D004687 3.2e-37 159.8 291 37.5
Nn3g17343 Nelumbo nucifera HOM05D004089 ORTHO05D004687 3.2e-37 159.8 328 36.9
FAN13G1369 Fragaria x ananassa HOM05D004089 ORTHO05D004687 5.5e-37 159.1 287 38.7
Sed0010910 Sechium edule HOM05D004089 ORTHO05D004687 5.5e-37 159.1 288 37.2
Glyma.04G165800 Glycine max HOM05D004089 ORTHO05D004687 7.1e-37 158.7 329 35.9
Glyma.06G196700 Glycine max HOM05D004089 ORTHO05D004687 1.2e-36 157.9 331 36.6
Phvul.009G184900 Phaseolus vulgaris HOM05D004089 ORTHO05D004687 1.2e-36 157.9 330 37.0
Potri.015G060900 Populus trichocarpa HOM05D004089 ORTHO05D004687 1.2e-36 157.9 306 38.2
FAN08G0374 Fragaria x ananassa HOM05D004089 ORTHO05D004687 2.7e-36 156.8 287 38.3
Oeu052462.1 Olea europaea HOM05D004089 ORTHO05D004687 2.7e-36 156.8 304 35.9
Cc04_g14350 Coffea canephora HOM05D004089 ORTHO05D004687 3.5e-36 156.4 329 35.0
MD06G1197900 Malus domestica HOM05D004089 ORTHO05D004687 6.0e-36 155.6 331 34.7
Hma1.2p1_0060F.1_g033460 Hydrangea macrophylla HOM05D004089 ORTHO05D004687 7.9e-36 155.2 324 34.6
MD14G1205500 Malus domestica HOM05D004089 ORTHO05D004687 7.9e-36 155.2 293 35.8
PSO478G2558 Papaver somniferum HOM05D004089 ORTHO05D004687 7.9e-36 155.2 294 38.4
FAN18G2014 Fragaria x ananassa HOM05D004089 ORTHO05D004687 1.0e-35 154.8 318 35.8
FvH4_5g14500 Fragaria vesca HOM05D004089 ORTHO05D004687 1.3e-35 154.5 287 38.0
RcHm_v2.0_Chr7g0182161 Rosa chinensis HOM05D004089 ORTHO05D004687 1.3e-35 154.5 289 38.1
Psat4g049120 Pisum sativum HOM05D004089 ORTHO05D004687 2.3e-35 153.7 299 36.5
Medtr3g037110 Medicago truncatula HOM05D004089 ORTHO05D004687 3.9e-35 152.9 318 34.9
VMungo1309G2967 Vigna mungo HOM05D004089 ORTHO05D004687 3.9e-35 152.9 333 35.7
Oeu046997.1 Olea europaea HOM05D004089 ORTHO05D004687 5.1e-35 152.5 307 35.2
Solyc06g069680.1 Solanum lycopersicum HOM05D004089 ORTHO05D004687 1.9e-34 150.6 300 36.3
Psat5g199240 Pisum sativum HOM05D004089 ORTHO05D004687 2.5e-34 150.2 284 36.6
arahy.Tifrunner.gnm1.ann1.JX1FK0 Arachis hypogaea HOM05D004089 ORTHO05D004687 3.3e-34 149.8 297 36.7
MELO3C002001.2 Cucumis melo HOM05D004089 ORTHO05D004687 3.3e-34 149.8 309 35.9
Peaxi162Scf00274g10024 Petunia axillaris HOM05D004089 ORTHO05D004687 5.6e-34 149.1 287 34.8
Sed0006516 Sechium edule HOM05D004089 ORTHO05D004687 7.4e-34 148.7 286 35.0
Sopen06g026980 Solanum pennellii HOM05D004089 ORTHO05D004687 9.6e-34 148.3 288 37.2
DCAR_021516 Daucus carota HOM05D004089 ORTHO05D004687 1.3e-33 147.9 326 33.4
Gohir.A07G070400 Gossypium hirsutum HOM05D004089 ORTHO05D004687 1.6e-33 147.5 313 34.5
Gohir.D07G074900 Gossypium hirsutum HOM05D004089 ORTHO05D004687 1.6e-33 147.5 313 34.8
Sabra15G0086100 Salix brachista HOM05D004089 ORTHO05D004687 1.6e-33 147.5 304 36.5
Lj5P107T92 Lonicera japonica HOM05D004089 ORTHO05D004687 2.1e-33 147.1 306 36.9
Gorai.001G079000 Gossypium raimondii HOM05D004089 ORTHO05D004687 3.7e-33 146.4 313 34.5
CsaV3_1G005700 Cucumis sativus L. HOM05D004089 ORTHO05D004687 6.2e-33 145.6 309 35.0
Lsat_1_v5_gn_4_109001 Lactuca sativa HOM05D004089 ORTHO05D004687 8.2e-33 145.2 284 36.6
C07p44990 Brassica napus HOM05D004089 ORTHO05D004687 1.4e-32 144.4 298 37.2
AT5G61340 Arabidopsis thaliana HOM05D004089 ORTHO05D004687 2.4e-32 143.7 298 35.6
Migut.D01757 Erythranthe guttata HOM05D004089 ORTHO05D004687 2.4e-32 143.7 322 32.9
Rhsim08G0151100 Rhododendron simsii HOM05D004089 ORTHO05D004687 2.4e-32 143.7 298 34.9
BolC7t45022H Brassica oleracea HOM05D004089 ORTHO05D004687 3.1e-32 143.3 298 36.6
Ca_21804_v3 Cicer arietinum L. HOM05D004089 ORTHO05D004687 5.3e-32 142.5 304 36.2
Lj1g0017851 Lotus japonicus HOM05D004089 ORTHO05D004687 5.3e-32 142.5 314 34.4
PGR044G2522 Punica granatum HOM05D004089 ORTHO05D004687 5.3e-32 142.5 295 36.6
BraA03t13814Z Brassica rapa HOM05D004089 ORTHO05D004687 1.2e-31 141.4 298 36.2
CSS0047924 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 1.2e-31 141.4 165 48.5
DCAR_026035 Daucus carota HOM05D004089 ORTHO05D004687 1.5e-31 141.0 284 36.6
DCAR_016583 Daucus carota HOM05D004089 ORTHO05D004687 2.0e-31 140.6 324 32.7
Solyc03g115690.1 Solanum lycopersicum HOM05D004089 ORTHO05D004687 2.0e-31 140.6 292 33.2
PGSC0003DMG400024664 Solanum tuberosum HOM05D004089 ORTHO05D004687 2.0e-31 140.6 298 32.9
A03p46950 Brassica napus HOM05D004089 ORTHO05D004687 3.4e-31 139.8 298 36.2
SalBow7G3788 Salvia bowleyana HOM05D004089 ORTHO05D004687 3.4e-31 139.8 300 36.3
Sopen03g034670 Solanum pennellii HOM05D004089 ORTHO05D004687 7.6e-31 138.7 292 33.2
AL8G38000 Arabidopsis lyrata HOM05D004089 ORTHO05D004687 1.0e-30 138.3 298 34.6
THA.LOC104801435 Tarenaya hassleriana HOM05D004089 ORTHO05D004687 1.3e-30 137.9 321 32.7
CARHR275100 Cardamine hirsuta HOM05D004089 ORTHO05D004687 2.2e-30 137.1 299 35.8
Sed0015191 Sechium edule HOM05D004089 ORTHO05D004687 2.9e-30 136.7 287 33.4
PSO063G0630 Papaver somniferum HOM05D004089 ORTHO05D004687 4.9e-30 136.0 330 33.6
MELO3C017194.2 Cucumis melo HOM05D004089 ORTHO05D004687 1.4e-29 134.4 298 31.2
HanXRQChr04g0107211 Helianthus annuus HOM05D004089 ORTHO05D004687 1.9e-29 134.0 308 34.7
Gohir.D12G182200 Gossypium hirsutum HOM05D004089 ORTHO05D004687 2.5e-29 133.7 321 34.3
Lsat_1_v5_gn_1_13901 Lactuca sativa HOM05D004089 ORTHO05D004687 2.5e-29 133.7 281 35.6
TWI81G0628 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 2.5e-29 133.7 287 33.8
Lalb_Chr13g0303071 Lupinus albus HOM05D004089 ORTHO05D004687 4.2e-29 132.9 294 33.3
Gorai.008G195500 Gossypium raimondii HOM05D004089 ORTHO05D004687 5.5e-29 132.5 321 34.0
Carub.0008s2201 Capsella rubella HOM05D004089 ORTHO05D004687 7.1e-29 132.1 295 34.6
Sp2g24550 Schrenkiella parvula HOM05D004089 ORTHO05D004687 7.1e-29 132.1 298 35.2
ClCG06G015980 Citrullus lanatus HOM05D004089 ORTHO05D004687 9.3e-29 131.7 302 31.8
CsaV3_1G002580 Cucumis sativus L. HOM05D004089 ORTHO05D004687 1.6e-28 131.0 297 29.6
EL10Ac5g11067 Beta vulgaris HOM05D004089 ORTHO05D004687 4.6e-28 129.4 309 31.7
A09p07290 Brassica napus HOM05D004089 ORTHO05D004687 4.6e-28 129.4 298 33.6
HanXRQChr09g0270961 Helianthus annuus HOM05D004089 ORTHO05D004687 4.6e-28 129.4 300 34.0
Gohir.A11G032400 Gossypium hirsutum HOM05D004089 ORTHO05D004687 1.0e-27 128.3 309 34.0
BcaC03g18095 Brassica carinata HOM05D004089 ORTHO05D004687 1.3e-27 127.9 304 34.5
PGR083G0705 Punica granatum HOM05D004089 ORTHO05D004687 1.3e-27 127.9 301 31.9
BcaB04g19907 Brassica carinata HOM05D004089 ORTHO05D004687 2.3e-27 127.1 283 34.3
Eucgr.K02492 Eucalyptus grandis HOM05D004089 ORTHO05D004687 5.1e-27 125.9 296 34.5
TWI60G1703 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 5.1e-27 125.9 286 33.6
Gohir.D11G035700 Gossypium hirsutum HOM05D004089 ORTHO05D004687 8.7e-27 125.2 309 33.3
TWI15G0089 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 8.7e-27 125.2 290 32.4
unitig_26.g9653 Utricularia gibba HOM05D004089 ORTHO05D004687 1.5e-26 124.4 315 32.1
C09p08150 Brassica napus HOM05D004089 ORTHO05D004687 7.4e-26 122.1 283 33.6
CiPaw.11G047700 Carya illinoinensis HOM05D004089 ORTHO05D004687 7.4e-26 122.1 248 36.3
Eucgr.B00548 Eucalyptus grandis HOM05D004089 ORTHO05D004687 9.7e-26 121.7 327 30.0
Sc04g0002900 Simmondsia chinensis HOM05D004089 ORTHO05D004687 1.3e-25 121.3 328 30.5
Thhalv10005448m.g Eutrema salsugineum HOM05D004089 ORTHO05D004687 2.2e-25 120.6 300 32.0
Gorai.007G038500 Gossypium raimondii HOM05D004089 ORTHO05D004687 2.8e-25 120.2 309 33.0
Duzib147G1274 Durio zibethinus HOM05D004089 ORTHO05D004687 3.7e-25 119.8 209 43.5
BcaB07g29822 Brassica carinata HOM05D004089 ORTHO05D004687 1.4e-24 117.9 297 34.0
HanXRQChr16g0502591 Helianthus annuus HOM05D004089 ORTHO05D004687 2.4e-24 117.1 282 32.3
unitig_749.g13440 Utricularia gibba HOM05D004089 ORTHO05D004687 3.1e-24 116.7 295 33.9
Aa31LG11G2070 Aethionema arabicum HOM05D004089 ORTHO05D004687 2.0e-23 114.0 282 31.6
Migut.I00216 Erythranthe guttata HOM05D004089 ORTHO05D004687 4.5e-23 112.8 308 31.2
Rhsim08G0151200 Rhododendron simsii HOM05D004089 ORTHO05D004687 1.3e-22 111.3 308 28.9
THA.LOC104818514 Tarenaya hassleriana HOM05D004089 ORTHO05D004687 1.7e-22 110.9 285 31.6
BraA02t09111Z Brassica rapa HOM05D004089 ORTHO05D004687 2.2e-22 110.5 303 31.7
CANSAT80G2067 Cannabis sativa HOM05D004089 ORTHO05D004687 2.2e-22 110.5 304 31.2
SGA_v2.0_scaffold25G10938 Striga asiatica HOM05D004089 ORTHO05D004687 2.2e-22 110.5 318 32.7
C02p61630 Brassica napus HOM05D002313 ORTHO05D003747 2.9e-22 110.2 303 31.7
BcaC04g23456 Brassica carinata HOM05D004089 ORTHO05D004687 5.0e-22 109.4 285 31.2
BolC2t12218H Brassica oleracea HOM05D002313 ORTHO05D003747 5.0e-22 109.4 281 33.1
Gohir.A11G032333 Gossypium hirsutum HOM05D004089 ORTHO05D004687 1.1e-21 108.2 252 34.9
SGA_v2.0_scaffold7G04046 Striga asiatica HOM05D004089 ORTHO05D004687 3.2e-21 106.7 291 29.2
A02p41700 Brassica napus HOM05D002313 ORTHO05D004687 4.2e-21 106.3 303 30.7
COL.COLO4_12233 Corchorus olitorius HOM05D004089 ORTHO05D004687 4.2e-21 106.3 120 50.0
unitig_749.g14136 Utricularia gibba HOM05D004089 ORTHO05D004687 4.2e-21 106.3 297 30.3
TAR369G0101 Trochodendron aralioides HOM05D004089 ORTHO05D004687 9.4e-21 105.1 143 42.0
Potri.012G068000 Populus trichocarpa HOM05D004089 ORTHO05D004687 1.6e-20 104.4 243 33.3
TAR626G1449 Trochodendron aralioides HOM05D004089 ORTHO05D004687 2.1e-20 104.0 143 41.3
Ca_13877_v3 Cicer arietinum L. HOM05D004089 ORTHO05D004687 7.9e-20 102.1 229 34.1
Dinv38750 Davidia involucrata HOM05D004089 ORTHO05D004687 7.9e-20 102.1 284 34.2
Oeu006382.1 Olea europaea HOM05D000714 ORTHO05D000544 1.8e-19 100.9 194 34.5
ATR0730G119 Amborella trichopoda HOM05D004089 ORTHO05D004687 8.8e-19 98.6 310 29.4
Eucgr.I02003 Eucalyptus grandis HOM05D004089 ORTHO05D004687 1.4e-16 91.3 273 33.7
Lalb_Chr07g0178191 Lupinus albus HOM05D004089 ORTHO05D004687 1.8e-16 90.9 201 31.3
PGR004G1946 Punica granatum HOM05D004089 ORTHO05D004687 2.4e-16 90.5 274 32.5
Cpa.g.sc13.300 Carica papaya HOM05D004089 ORTHO05D004687 3.1e-16 90.1 230 29.6
Zm00001eb136250 Zea mays HOM05D004089 ORTHO05D004687 2.0e-15 87.4 301 27.2
CDE07G1350 Ceratophyllum demersum HOM05D004089 ORTHO05D004687 4.5e-15 86.3 159 36.5
CDE04G1821 Ceratophyllum demersum HOM05D004089 ORTHO05D004687 1.0e-14 85.1 130 38.5
Lj9A467G76 Lonicera japonica HOM05D004089 ORTHO05D004687 1.1e-13 81.6 188 34.0
TPR.G12274 Trifolium pratense HOM05D000041 ORTHO05D006140 1.1e-13 81.6 135 36.3
Rhsim08G0150900 Rhododendron simsii HOM05D004089 ORTHO05D004687 1.9e-13 80.9 169 33.1
Zm00001eb029590 Zea mays HOM05D004089 ORTHO05D004687 1.9e-13 80.9 300 26.7
PSO063G7677 Papaver somniferum HOM05D004089 ORTHO05D004687 5.5e-13 79.3 99 41.4
Os12g0577200 Oryza sativa ssp. japonica HOM05D004089 ORTHO05D004687 9.4e-13 78.6 312 27.2
Rhsim10G0035500 Rhododendron simsii HOM05D004089 ORTHO05D004687 4.7e-12 76.3 95 44.2
Gohir.A12G179600 Gossypium hirsutum HOM05D004089 ORTHO05D004687 5.1e-11 72.8 173 34.1
Migut.L01241 Erythranthe guttata HOM05D003669 ORTHO05D005046 1.4e-08 64.7 306 25.2
PSO478G5197 Papaver somniferum HOM05D003669 ORTHO05D005046 1.2e-07 61.6 282 25.9
Os12g0507400 Oryza sativa ssp. japonica HOM05D004089 ORTHO05D004687 2.0e-07 60.8 308 25.3
TWI75G1484 Tripterygium wilfordii HOM05D003669 ORTHO05D005046 2.6e-07 60.5 280 25.0
Lalb_Chr09g0329151 Lupinus albus HOM05D003669 ORTHO05D005046 1.3e-06 58.2 291 23.4
AUR62008468 Chenopodium quinoa HOM05D000001 ORTHO05D011953 2.2e-06 57.4 96 36.5
Cc11_g12530 Coffea canephora HOM05D003669 ORTHO05D005046 2.2e-06 57.4 312 24.4
SGA_v2.0_scaffold16G07737 Striga asiatica HOM05D003669 ORTHO05D005046 3.8e-06 56.6 301 24.6
MSTRG.7776 Avicennia marina HOM05D003669 ORTHO05D005046 5.0e-06 56.2 278 25.5
TWI31G0268 Tripterygium wilfordii HOM05D003669 ORTHO05D005046 5.0e-06 56.2 287 25.1


User provided reference genes

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