Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G047600 Manihot esculenta HOM05D008101 ORTHO05D010163 2.1e-19 98.2 55 100.0
Thecc.04G085600 Theobroma cacao HOM05D008101 ORTHO05D010163 6.9e-15 83.2 53 86.8
Gohir.A07G206000 Gossypium hirsutum HOM05D008101 ORTHO05D010163 2.6e-14 81.3 53 81.1
Gohir.D07G212050 Gossypium hirsutum HOM05D008101 ORTHO05D010163 3.4e-14 80.9 53 79.2
Gorai.001G239800 Gossypium raimondii HOM05D008101 ORTHO05D010163 3.4e-14 80.9 53 79.2
Dinv33773 Davidia involucrata HOM05D008101 ORTHO05D010163 4.5e-14 80.5 52 82.7
RcHm_v2.0_Chr2g0167541 Rosa chinensis HOM05D008101 ORTHO05D010163 7.6e-14 79.7 52 80.8
RcHm_v2.0_Chr2g0167501 Rosa chinensis HOM05D008101 ORTHO05D010163 1.7e-13 78.6 52 78.8
CSS0047461 Camellia sinensis var. sinensis HOM05D008101 ORTHO05D010163 2.9e-13 77.8 53 73.6
RcHm_v2.0_Chr2g0167591 Rosa chinensis HOM05D008101 ORTHO05D010163 2.9e-13 77.8 52 78.8
Cc07_g03530 Coffea canephora HOM05D008101 ORTHO05D010163 1.4e-12 75.5 53 77.4
FvH4_6g48300 Fragaria vesca HOM05D008101 ORTHO05D010163 1.4e-12 75.5 49 79.6
FAN09G0090 Fragaria x ananassa HOM05D008101 ORTHO05D010163 1.4e-12 75.5 49 79.6
FAN14G5148 Fragaria x ananassa HOM05D008101 ORTHO05D010163 1.4e-12 75.5 49 79.6
CiPaw.03G024700 Carya illinoinensis HOM05D008101 ORTHO05D010163 2.5e-12 74.7 53 75.5
Nn4g23220 Nelumbo nucifera HOM05D008101 ORTHO05D010163 3.2e-12 74.3 53 67.9
Glyma.13G062100 Glycine max HOM05D008101 ORTHO05D010163 5.5e-12 73.6 52 75.0
FAN09G1556 Fragaria x ananassa HOM05D008101 ORTHO05D010163 7.1e-12 73.2 48 79.2
Medtr6g012640 Medicago truncatula HOM05D008101 ORTHO05D010163 7.1e-12 73.2 53 79.2
Potri.010G234200 Populus trichocarpa HOM05D008101 ORTHO05D010163 7.1e-12 73.2 53 77.4
Phvul.004G030000 Phaseolus vulgaris HOM05D008101 ORTHO05D010163 1.6e-11 72.0 52 73.1
FAN05G3293 Fragaria x ananassa HOM05D008101 ORTHO05D010163 3.5e-11 70.9 48 77.1
Prupe.3G265300 Prunus persica HOM05D008101 ORTHO05D010163 6.1e-11 70.1 53 73.6
Migut.H00938 Erythranthe guttata HOM05D008101 ORTHO05D010163 7.9e-11 69.7 53 69.8
FAN02G2446 Fragaria x ananassa HOM05D008101 ORTHO05D010163 7.9e-11 69.7 48 75.0
PGR083G0374 Punica granatum HOM05D008101 ORTHO05D010163 1.8e-10 68.6 53 67.9
MD09G1053300 Malus domestica HOM05D008101 ORTHO05D010163 2.3e-10 68.2 53 69.8
Nn3g17291 Nelumbo nucifera HOM05D008101 ORTHO05D010163 1.1e-09 65.9 53 66.0
CAN.G206.165 Capsicum annuum HOM05D008101 ORTHO05D010163 1.9e-09 65.1 53 69.8
Sed0001905 Sechium edule HOM05D008101 ORTHO05D010163 4.3e-09 63.9 53 69.8
Sopen02g032840 Solanum pennellii HOM05D008101 ORTHO05D010163 7.4e-09 63.2 53 67.9
Aqoxy3G03441 Aquilegia oxysepala HOM05D008101 ORTHO05D010163 9.7e-09 62.8 51 70.6
FAN05G0138 Fragaria x ananassa HOM05D000576 ORTHO05D010163 9.7e-09 62.8 45 73.3
FAN23G1982 Fragaria x ananassa HOM05D000576 ORTHO05D010163 9.7e-09 62.8 45 73.3
Os04g0460350 Oryza sativa ssp. japonica HOM05D008101 ORTHO05D010163 9.7e-09 62.8 53 62.3
Rhsim10G0036400 Rhododendron simsii HOM05D018356 ORTHO05D010163 1.6e-08 62.0 49 67.3
THA.LOC109116617 Tarenaya hassleriana HOM05D008101 ORTHO05D010163 1.6e-08 62.0 50 64.0
SalBow1G0549 Salvia bowleyana HOM05D008101 ORTHO05D010163 3.7e-08 60.8 53 66.0
SalBow1G6176 Salvia bowleyana HOM05D008101 ORTHO05D010163 3.7e-08 60.8 53 66.0
EL10Ac9g21543 Beta vulgaris HOM05D008101 ORTHO05D010163 4.8e-08 60.5 49 63.3
Lsat_1_v5_gn_4_182661 Lactuca sativa HOM05D008101 ORTHO05D010163 6.3e-08 60.1 51 60.8
SalBow8G3752 Salvia bowleyana HOM05D008101 ORTHO05D010163 6.3e-08 60.1 53 66.0
Lsat_1_v5_gn_4_179321 Lactuca sativa HOM05D008101 ORTHO05D010163 1.1e-07 59.3 51 58.8
SEGI_19148 Sequoiadendron giganteum HOM05D008101 ORTHO05D010163 1.1e-07 59.3 48 64.6
Lj2g0000476 Lotus japonicus HOM05D008101 ORTHO05D010163 2.4e-07 58.2 52 61.5
ClCG10G015220 Citrullus lanatus HOM05D008101 ORTHO05D010163 5.3e-07 57.0 49 67.3
Lsat_1_v5_gn_4_179600 Lactuca sativa HOM05D008101 ORTHO05D010163 9.0e-07 56.2 48 60.4
Lalb_Chr06g0175261 Lupinus albus HOM05D008101 ORTHO05D010163 1.2e-06 55.8 53 62.3
BcaC06g33664 Brassica carinata HOM05D008101 ORTHO05D010163 1.5e-06 55.5 51 62.7
BcaC06g33665 Brassica carinata HOM05D008101 ORTHO05D010163 1.5e-06 55.5 51 62.7
C07p37940 Brassica napus HOM05D008101 ORTHO05D010163 1.5e-06 55.5 51 62.7
BolC7t44316H Brassica oleracea HOM05D008101 ORTHO05D010163 1.5e-06 55.5 51 62.7
Carub.0007s3631 Capsella rubella HOM05D008101 ORTHO05D010163 2.0e-06 55.1 50 58.0
CARHR152140 Cardamine hirsuta HOM05D008101 ORTHO05D010163 2.6e-06 54.7 51 60.8
Sp2g17670 Schrenkiella parvula HOM05D008101 ORTHO05D010163 2.6e-06 54.7 51 60.8
Aa31LG2G4160 Aethionema arabicum HOM05D008101 ORTHO05D010163 3.4e-06 54.3 50 58.0
A06p40170 Brassica napus HOM05D008101 ORTHO05D010163 3.4e-06 54.3 51 60.8
BraA06t26932Z Brassica rapa HOM05D008101 ORTHO05D010163 3.4e-06 54.3 51 60.8
Solyc02g088130.1 Solanum lycopersicum HOM05D008101 ORTHO05D010163 3.4e-06 54.3 47 68.1
BcaC06g30874 Brassica carinata HOM05D008101 ORTHO05D010163 4.5e-06 53.9 51 60.8
BcaB07g30101 Brassica carinata HOM05D008101 ORTHO05D010163 7.7e-06 53.1 51 60.8
C02p56620 Brassica napus HOM05D008101 ORTHO05D010163 7.7e-06 53.1 51 60.8
Carub.0005s0764 Capsella rubella HOM05D008101 ORTHO05D010163 7.7e-06 53.1 51 58.8
BcaC03g17658 Brassica carinata HOM05D008101 ORTHO05D010163 1.0e-05 52.8 51 58.8
BolC2t11574H Brassica oleracea HOM05D008101 ORTHO05D010163 1.0e-05 52.8 51 58.8
BolC2t11721H Brassica oleracea HOM05D008101 ORTHO05D010163 1.0e-05 52.8 51 58.8


User provided reference genes

Program Settings