Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 2.1e-202 708.8 347 100.0
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 3.5e-181 638.3 342 88.9
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 6.0e-181 637.5 344 88.1
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 7.8e-181 637.1 344 88.4
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 3.0e-180 635.2 342 87.4
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 3.9e-180 634.8 347 87.0
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 3.9e-180 634.8 344 87.8
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 8.7e-180 633.6 344 87.2
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 1.5e-179 632.9 347 86.7
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 1.9e-179 632.5 342 86.8
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 5.6e-179 630.9 342 86.5
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 1.2e-178 629.8 342 87.4
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 1.1e-177 626.7 344 86.6
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 1.8e-177 625.9 347 85.6
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 6.9e-177 624.0 347 84.4
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 6.9e-177 624.0 344 85.2
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 9.0e-177 623.6 342 86.3
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 1.5e-176 622.9 347 85.9
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 3.4e-176 621.7 347 85.9
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 4.9e-175 617.8 342 84.5
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 6.4e-175 617.5 341 85.6
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 6.4e-175 617.5 347 84.7
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 6.4e-175 617.5 344 84.9
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 1.1e-174 616.7 341 84.8
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 2.4e-174 615.5 344 83.7
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 4.2e-174 614.8 342 85.1
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 1.2e-173 613.2 342 85.4
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 2.7e-173 612.1 342 85.1
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 4.6e-173 611.3 344 84.3
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 4.6e-173 611.3 344 84.3
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 4.6e-173 611.3 344 84.3
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 4.6e-173 611.3 346 82.7
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 6.0e-173 610.9 343 83.7
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 7.8e-173 610.5 347 83.3
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 7.8e-173 610.5 347 83.3
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 7.8e-173 610.5 342 85.4
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 7.8e-173 610.5 364 81.6
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 1.7e-172 609.4 342 84.5
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 1.7e-172 609.4 343 84.8
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 2.3e-172 609.0 342 83.3
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 3.0e-172 608.6 342 84.8
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 3.0e-172 608.6 344 84.0
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 1.5e-171 606.3 344 82.6
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 1.5e-171 606.3 357 81.8
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 2.5e-171 605.5 343 83.7
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 2.5e-171 605.5 342 84.2
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 3.3e-171 605.1 343 82.5
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 5.6e-171 604.4 344 82.0
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 5.6e-171 604.4 344 83.4
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 7.3e-171 604.0 341 81.5
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 7.3e-171 604.0 346 82.1
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 9.6e-171 603.6 344 83.4
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 1.3e-170 603.2 344 81.1
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 1.3e-170 603.2 347 81.0
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 1.6e-170 602.8 342 83.9
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 1.6e-170 602.8 344 82.0
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 3.6e-170 601.7 344 81.7
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 4.8e-170 601.3 342 83.3
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 4.8e-170 601.3 344 82.6
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 6.2e-170 600.9 347 83.0
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 8.1e-170 600.5 342 82.5
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 1.4e-169 599.7 343 82.2
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 1.8e-169 599.4 341 81.5
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 2.4e-169 599.0 344 81.4
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 2.4e-169 599.0 344 80.8
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 2.4e-169 599.0 344 82.0
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 2.4e-169 599.0 341 81.8
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 4.0e-169 598.2 343 82.2
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 6.9e-169 597.4 344 81.7
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 9.0e-169 597.0 351 81.8
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 9.0e-169 597.0 341 81.5
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 2.6e-168 595.5 340 81.8
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 3.4e-168 595.1 342 82.2
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 3.4e-168 595.1 347 79.5
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 3.4e-168 595.1 347 81.6
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 5.8e-168 594.3 343 80.5
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 7.6e-168 594.0 344 81.4
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 7.6e-168 594.0 342 82.2
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 2.2e-167 592.4 343 80.5
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 4.9e-167 591.3 347 79.0
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 8.4e-167 590.5 344 81.7
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 8.4e-167 590.5 344 78.8
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 1.1e-166 590.1 348 80.5
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 7.1e-166 587.4 341 80.4
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 6.0e-165 584.3 342 81.3
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 7.9e-165 583.9 341 78.9
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 6.7e-164 580.9 353 79.9
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 8.7e-164 580.5 344 79.4
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 1.9e-163 579.3 342 80.7
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 1.9e-163 579.3 344 81.7
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 1.9e-163 579.3 344 79.9
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 3.3e-163 578.6 358 77.7
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 3.3e-163 578.6 361 77.8
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 4.0e-161 571.6 318 85.2
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 2.0e-160 569.3 343 77.8
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 4.5e-160 568.2 436 66.1
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 4.9e-159 564.7 391 70.6
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 6.4e-159 564.3 344 76.7
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 7.9e-157 557.4 344 76.2
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 6.2e-154 547.7 348 77.3
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 5.3e-153 544.7 444 62.2
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 5.8e-152 541.2 353 74.8
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 1.7e-151 539.7 342 77.2
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 1.3e-148 530.0 306 82.0
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 3.3e-147 525.4 339 73.5
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 1.4e-145 520.0 347 73.8
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 4.5e-144 515.0 346 70.8
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 5.0e-143 511.5 272 89.3
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 2.7e-141 505.8 339 71.4
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 1.5e-128 463.4 326 66.9
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.2e-127 459.5 258 84.1
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 2.2e-127 459.5 344 66.6
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 1.8e-121 439.9 387 60.7
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.4e-121 439.5 254 80.7
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 2.9e-119 432.6 312 69.2
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 6.5e-119 431.4 312 69.2
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 1.5e-118 430.3 339 61.4
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 2.2e-114 416.4 231 83.5
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 2.2e-114 416.4 228 87.3
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 1.8e-108 396.7 340 55.9
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 2.0e-107 393.3 313 64.5
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 4.5e-104 382.1 245 73.5
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.7e-103 380.2 349 58.2
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 7.0e-97 358.2 344 53.2
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 1.2e-96 357.5 339 54.0
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 3.9e-95 352.4 254 70.1
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 2.3e-92 343.2 189 87.8
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 5.0e-87 325.5 190 81.1
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 1.1e-81 307.8 222 71.6
Actinidia11084 Actinidia chinensis HOM05D005273 ORTHO05D006195 1.1e-78 297.7 176 79.0
SEGI_10566 Sequoiadendron giganteum HOM05D005273 ORTHO05D006195 6.0e-64 248.8 157 75.8
Peaxi162Scf00112g00113 Petunia axillaris HOM05D005273 ORTHO05D006195 1.1e-57 228.0 134 81.3
Peaxi162Scf00112g00110 Petunia axillaris HOM05D005273 ORTHO05D006195 7.6e-51 205.3 115 80.9
Oeu007130.1 Olea europaea HOM05D005273 ORTHO05D006195 2.2e-50 203.8 340 38.5
Lj1A718G26 Lonicera japonica HOM05D005273 ORTHO05D006195 6.4e-50 202.2 112 83.0
Atru.chr6.2976 Acer truncatum HOM05D005273 ORTHO05D006195 1.4e-41 174.5 99 81.8
EL10Ac9g21222 Beta vulgaris HOM05D005273 ORTHO05D006195 1.2e-40 171.4 248 44.0
TPR.G7356 Trifolium pratense HOM05D005273 ORTHO05D006195 7.9e-40 168.7 94 83.0
Cfa022577 Carpinus fangiana HOM05D005273 ORTHO05D006195 6.2e-37 159.1 357 33.6
Lj3g0005703 Lotus japonicus HOM05D002777 ORTHO05D001516 2.1e-24 117.5 81 74.1
AUR62041872 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.8e-23 114.4 95 61.1
BcaNung01011 Brassica carinata HOM05D005273 ORTHO05D006195 8.8e-23 112.1 255 34.1
AUR62036776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.1e-22 111.7 170 44.7
Lalb_Chr09g0333161 Lupinus albus HOM05D005273 ORTHO05D006195 1.3e-18 98.2 85 58.8
TPR.G31736 Trifolium pratense HOM05D005273 ORTHO05D006195 1.7e-13 81.3 45 82.2
Lj5A796T26 Lonicera japonica HOM05D005273 ORTHO05D006195 2.9e-10 70.5 42 71.4


User provided reference genes

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