Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G043100 Manihot esculenta HOM05D005768 ORTHO05D007100 5.4e-110 401.0 200 100.0
Dinv27944 Davidia involucrata HOM05D005768 ORTHO05D007100 5.9e-72 274.6 201 68.2
GSVIVG01035325001 Vitis vinifera HOM05D005768 ORTHO05D007100 1.6e-69 266.5 201 69.2
Atru.chr4.1221 Acer truncatum HOM05D005768 ORTHO05D007100 1.4e-68 263.5 203 68.0
Ciclev10022280m.g Citrus clementina HOM05D005768 ORTHO05D007100 2.0e-67 259.6 196 67.9
TWI63G1351 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 4.4e-67 258.5 200 65.5
Potri.006G234800 Populus trichocarpa HOM05D005768 ORTHO05D007100 1.7e-66 256.5 205 68.3
Atru.chr7.2675 Acer truncatum HOM05D005768 ORTHO05D007100 3.7e-66 255.4 193 69.4
Hma1.2p1_0442F.1_g153950 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 6.3e-66 254.6 197 66.5
Sabra06G0183200 Salix brachista HOM05D005768 ORTHO05D007100 6.3e-66 254.6 205 68.3
CSS0002565 Camellia sinensis var. sinensis HOM05D005768 ORTHO05D007100 3.5e-64 248.8 199 64.8
TWI34G0524 Tripterygium wilfordii HOM05D005768 ORTHO05D007100 1.3e-63 246.9 173 69.4
Thecc.09G049100 Theobroma cacao HOM05D005768 ORTHO05D007100 1.7e-63 246.5 196 66.3
CANSAT56G2391 Cannabis sativa HOM05D005768 ORTHO05D007100 5.0e-63 245.0 173 71.7
Duzib168G0475 Durio zibethinus HOM05D005768 ORTHO05D007100 5.0e-63 245.0 199 66.3
Prupe.1G443600 Prunus persica HOM05D005768 ORTHO05D007100 5.0e-63 245.0 191 67.0
Cpa.g.sc1868.1 Carica papaya HOM05D005768 ORTHO05D007100 1.1e-62 243.8 199 63.3
CiPaw.07G201500 Carya illinoinensis HOM05D005768 ORTHO05D007100 3.2e-62 242.3 200 66.0
Hma1.2p1_0603F.1_g187720 Hydrangea macrophylla HOM05D005768 ORTHO05D007100 3.2e-62 242.3 166 71.1
RcHm_v2.0_Chr6g0306801 Rosa chinensis HOM05D005768 ORTHO05D007100 1.2e-61 240.4 183 66.7
Actinidia18208 Actinidia chinensis HOM05D005768 ORTHO05D007100 4.7e-61 238.4 201 64.2
COL.COLO4_21009 Corchorus olitorius HOM05D005768 ORTHO05D007100 8.0e-61 237.7 181 68.5
QL12p040865 Quercus lobata HOM05D005768 ORTHO05D007100 8.0e-61 237.7 278 51.1
TPR.G33208 Trifolium pratense HOM05D005768 ORTHO05D007100 1.8e-60 236.5 179 67.0
FAN20G2834 Fragaria x ananassa HOM05D005768 ORTHO05D007100 4.0e-60 235.3 191 63.4
FAN27G1715 Fragaria x ananassa HOM05D005768 ORTHO05D007100 4.0e-60 235.3 183 65.0
Gorai.001G024700 Gossypium raimondii HOM05D005768 ORTHO05D007100 4.0e-60 235.3 199 64.3
Gohir.D07G024000 Gossypium hirsutum HOM05D005768 ORTHO05D007100 5.2e-60 235.0 199 63.8
Glyma.19G233100 Glycine max HOM05D005768 ORTHO05D007100 7.5e-59 231.1 198 64.6
Psat0s1830g0160 Pisum sativum HOM05D005768 ORTHO05D007100 7.5e-59 231.1 195 64.1
Eucgr.C02988 Eucalyptus grandis HOM05D005768 ORTHO05D007100 9.7e-59 230.7 201 61.2
Cc00_g09250 Coffea canephora HOM05D005768 ORTHO05D007100 1.7e-58 229.9 190 63.7
Rhsim07G0145000 Rhododendron simsii HOM05D005768 ORTHO05D007100 2.8e-58 229.2 201 60.2
Aqoxy5G03966 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 4.8e-58 228.4 195 60.5
TAR624G0371 Trochodendron aralioides HOM05D005768 ORTHO05D007100 6.3e-58 228.0 198 63.1
Lj1g0020400 Lotus japonicus HOM05D005768 ORTHO05D007100 1.1e-57 227.3 189 63.0
Sopen08g019690 Solanum pennellii HOM05D005768 ORTHO05D007100 1.8e-57 226.5 203 59.6
THA.LOC104812009 Tarenaya hassleriana HOM05D005768 ORTHO05D007100 1.8e-57 226.5 201 60.7
Haze_01966 Corylus avellana HOM05D005768 ORTHO05D007100 3.1e-57 225.7 156 70.5
PSO832G3354 Papaver somniferum HOM05D005768 ORTHO05D007100 3.1e-57 225.7 160 72.5
Lalb_Chr08g0242881 Lupinus albus HOM05D005768 ORTHO05D007100 7.0e-57 224.6 176 63.6
TAR383G0888 Trochodendron aralioides HOM05D005768 ORTHO05D007100 7.0e-57 224.6 173 68.8
MD08G1109000 Malus domestica HOM05D005768 ORTHO05D007100 9.1e-57 224.2 192 62.0
Medtr7g112710 Medicago truncatula HOM05D005768 ORTHO05D007100 9.1e-57 224.2 168 69.6
TPR.G29192 Trifolium pratense HOM05D005768 ORTHO05D007100 1.2e-56 223.8 156 70.5
Phvul.006G089400 Phaseolus vulgaris HOM05D005768 ORTHO05D007100 1.6e-56 223.4 199 59.8
Lalb_Chr24g0397251 Lupinus albus HOM05D005768 ORTHO05D007100 2.0e-56 223.0 204 59.8
PSO063G0290 Papaver somniferum HOM05D005768 ORTHO05D007100 2.0e-56 223.0 182 63.7
Ah.02g116310 Amaranthus hybridus HOM05D005768 ORTHO05D007100 4.5e-56 221.9 194 61.3
Solyc08g066030.3 Solanum lycopersicum HOM05D005768 ORTHO05D007100 5.9e-56 221.5 193 59.6
Nn6g34840 Nelumbo nucifera HOM05D005768 ORTHO05D007100 1.0e-55 220.7 187 62.6
Psat0s1830g0280 Pisum sativum HOM05D005768 ORTHO05D007100 1.3e-55 220.3 191 61.8
vmacro07473 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 1.7e-55 219.9 205 59.5
CARHR021320 Cardamine hirsuta HOM05D005768 ORTHO05D007100 2.2e-55 219.5 183 61.2
AUR62017359 Chenopodium quinoa HOM05D005768 ORTHO05D007100 2.2e-55 219.5 182 61.5
MELO3C003477.2 Cucumis melo HOM05D005768 ORTHO05D007100 2.9e-55 219.2 197 59.4
PSO832G1534 Papaver somniferum HOM05D005768 ORTHO05D007100 3.8e-55 218.8 185 62.2
PGSC0003DMG401025462 Solanum tuberosum HOM05D005768 ORTHO05D007100 6.5e-55 218.0 176 63.1
EL10Ac5g12654 Beta vulgaris HOM05D005768 ORTHO05D007100 1.5e-54 216.9 195 61.0
CsaV3_3G048420 Cucumis sativus L. HOM05D005768 ORTHO05D007100 1.5e-54 216.9 198 59.1
Aa31LG7G5050 Aethionema arabicum HOM05D005768 ORTHO05D007100 2.5e-54 216.1 188 58.0
Migut.A00171 Erythranthe guttata HOM05D005768 ORTHO05D007100 2.5e-54 216.1 198 58.6
Aqoxy7G01356 Aquilegia oxysepala HOM05D005768 ORTHO05D007100 3.2e-54 215.7 197 58.9
PGR044G0118 Punica granatum HOM05D005768 ORTHO05D007100 3.2e-54 215.7 202 57.9
PSO063G1479 Papaver somniferum HOM05D005768 ORTHO05D007100 1.2e-53 213.8 159 69.2
PSO063G2632 Papaver somniferum HOM05D005768 ORTHO05D007100 1.2e-53 213.8 159 69.2
PSO063G5891 Papaver somniferum HOM05D005768 ORTHO05D007100 1.2e-53 213.8 159 69.2
AT1G20890 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 1.8e-52 209.9 180 61.1
AUR62010536 Chenopodium quinoa HOM05D005768 ORTHO05D007100 1.8e-52 209.9 169 63.3
Sp1g18590 Schrenkiella parvula HOM05D005768 ORTHO05D007100 1.8e-52 209.9 185 58.4
AL1G33910 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 2.3e-52 209.5 180 61.1
A07p15420 Brassica napus HOM05D005768 ORTHO05D007100 5.2e-52 208.4 182 59.3
Sc09g0009490 Simmondsia chinensis HOM05D005768 ORTHO05D007100 5.2e-52 208.4 208 55.3
arahy.Tifrunner.gnm1.ann1.FJ9VJT Arachis hypogaea HOM05D005768 ORTHO05D007100 1.2e-51 207.2 212 56.1
Sed0000338 Sechium edule HOM05D005768 ORTHO05D007100 1.2e-51 207.2 199 56.3
Sed0022019 Sechium edule HOM05D005768 ORTHO05D007100 1.2e-51 207.2 199 56.8
Thhalv10008823m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 1.5e-51 206.8 182 59.9
Carub.0001s2036 Capsella rubella HOM05D005768 ORTHO05D007100 2.6e-51 206.1 183 58.5
BcaC06g34845 Brassica carinata HOM05D005768 ORTHO05D007100 3.4e-51 205.7 182 57.7
Lsat_1_v5_gn_3_56860 Lactuca sativa HOM05D005768 ORTHO05D007100 3.4e-51 205.7 157 64.3
AT1G76480 Arabidopsis thaliana HOM05D005768 ORTHO05D007100 4.4e-51 205.3 198 54.5
SalBow6G5216 Salvia bowleyana HOM05D005768 ORTHO05D007100 7.5e-51 204.5 173 58.4
Peaxi162Scf00699g00655 Petunia axillaris HOM05D005768 ORTHO05D007100 1.7e-50 203.4 163 63.2
SGA_v2.0_scaffold103G30048 Striga asiatica HOM05D005768 ORTHO05D007100 2.8e-50 202.6 166 62.0
BcaB03g14295 Brassica carinata HOM05D005768 ORTHO05D007100 8.3e-50 201.1 184 56.5
BcaB07g32084 Brassica carinata HOM05D005768 ORTHO05D007100 1.4e-49 200.3 183 58.5
HanXRQChr03g0078001 Helianthus annuus HOM05D005768 ORTHO05D007100 1.4e-49 200.3 150 64.0
Nitab4.5_0000318g0060 Nicotiana tabacum HOM05D005768 ORTHO05D007100 1.8e-49 199.9 151 66.2
Gohir.A07G022184 Gossypium hirsutum HOM05D005768 ORTHO05D007100 7.0e-49 198.0 156 66.7
vmacro05269 Vaccinium macrocarpon HOM05D005768 ORTHO05D007100 2.7e-48 196.1 178 60.1
FAN15G1520 Fragaria x ananassa HOM05D005768 ORTHO05D007100 3.5e-48 195.7 138 68.8
MSTRG.25924 Avicennia marina HOM05D005768 ORTHO05D007100 1.6e-45 186.8 161 60.9
ECA234G0765 Erigeron canadensis HOM05D000185 ORTHO05D000105 2.1e-45 186.4 167 61.7
Nitab4.5_0002021g0070 Nicotiana tabacum HOM05D005768 ORTHO05D007100 6.8e-44 181.4 140 64.3
Os03g0804100 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 2.0e-43 179.9 174 56.9
PSO832G4156 Papaver somniferum HOM05D005768 ORTHO05D007100 2.2e-42 176.4 142 64.8
Os08g0374900 Oryza sativa ssp. japonica HOM05D005768 ORTHO05D007100 3.7e-42 175.6 173 55.5
unitig_0.g2567 Utricularia gibba HOM05D005768 ORTHO05D007100 3.7e-42 175.6 152 58.6
Lj7A696G17 Lonicera japonica HOM05D005768 ORTHO05D007100 4.9e-42 175.3 192 54.2
Zm00001eb061390 Zea mays HOM05D005768 ORTHO05D007100 4.9e-42 175.3 195 51.3
SEGI_27706 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 1.8e-41 173.3 175 50.9
BolC7t42805H Brassica oleracea HOM05D005768 ORTHO05D007100 6.6e-39 164.9 139 59.0
AL2G36620 Arabidopsis lyrata HOM05D005768 ORTHO05D007100 8.6e-39 164.5 181 52.5
C07p22730 Brassica napus HOM05D005768 ORTHO05D007100 8.6e-39 164.5 139 59.7
Hund19578 Selenicereus undatus HOM05D005768 ORTHO05D007100 1.1e-38 164.1 116 72.4
Oeu033885.1 Olea europaea HOM05D005768 ORTHO05D007100 5.6e-38 161.8 118 66.1
SalBow4G3076 Salvia bowleyana HOM05D005768 ORTHO05D007100 1.2e-37 160.6 195 47.2
Ca_05797_v3 Cicer arietinum L. HOM05D001134 ORTHO05D001035 1.4e-36 157.1 126 65.9
PSO063G4631 Papaver somniferum HOM05D005768 ORTHO05D007100 2.3e-36 156.4 146 60.3
BraA06t24798Z Brassica rapa HOM05D005768 ORTHO05D007100 8.9e-36 154.5 188 47.3
A06p16890 Brassica napus HOM05D005768 ORTHO05D007100 2.6e-35 152.9 144 57.6
Glyma.03G235400 Glycine max HOM05D005768 ORTHO05D007100 1.8e-33 146.7 146 60.3
C05p19520 Brassica napus HOM05D005768 ORTHO05D007100 5.4e-33 145.2 181 48.1
BolC5t30654H Brassica oleracea HOM05D005768 ORTHO05D007100 5.4e-33 145.2 181 48.1
ATR0693G003 Amborella trichopoda HOM05D005768 ORTHO05D007100 1.6e-32 143.7 158 48.7
MBI02_g46987_MAGBIO Magnolia biondii HOM05D005768 ORTHO05D007100 8.6e-31 137.9 108 67.6
ClCG02G014210 Citrullus lanatus HOM05D005768 ORTHO05D007100 1.9e-30 136.7 130 54.6
Thhalv10019630m.g Eutrema salsugineum HOM05D005768 ORTHO05D007100 2.1e-29 133.3 150 50.7
FvH4_2g35150 Fragaria vesca HOM05D005768 ORTHO05D007100 1.4e-28 130.6 90 66.7
MBI02_g46884_MAGBIO Magnolia biondii HOM05D000614 ORTHO05D007100 1.2e-27 127.5 118 57.6
HPP92_009604 Vanilla planifolia HOM05D005768 ORTHO05D007100 2.6e-27 126.3 110 60.0
Pp3c24_1520 Physcomitrium patens HOM05D005768 ORTHO05D007100 4.1e-25 119.0 161 41.0
Mapoly0062s0068 Marchantia polymorpha HOM05D005768 ORTHO05D007100 1.0e-23 114.4 168 42.3
Sc09g0009510 Simmondsia chinensis HOM05D005768 ORTHO05D007100 2.3e-23 113.2 89 64.0
CDE02G0943 Ceratophyllum demersum HOM05D005768 ORTHO05D007100 6.6e-23 111.7 96 59.4
Oeu002722.1 Olea europaea HOM05D005768 ORTHO05D007100 2.3e-15 86.7 73 63.0
HanXRQChr14g0439211 Helianthus annuus HOM05D005768 ORTHO05D007100 1.1e-14 84.3 94 51.1
DCAR_003074 Daucus carota HOM05D001613 ORTHO05D001556 1.2e-13 80.9 73 56.2
Cre12.g547734 Chlamydomonas reinhardtii HOM05D005768 ORTHO05D007100 3.8e-10 69.3 127 37.0
ClCG11G015010 Citrullus lanatus HOM05D005768 ORTHO05D007100 4.1e-09 65.9 96 44.8
BcaC05g25998 Brassica carinata HOM05D005768 ORTHO05D007100 1.6e-08 63.9 59 50.8
SEGI_03586 Sequoiadendron giganteum HOM05D005768 ORTHO05D007100 4.6e-08 62.4 78 44.9
MCO02G048 Micromonas commoda HOM05D005768 ORTHO05D007100 3.9e-07 59.3 163 29.4
CBR_g130 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-06 57.8 90 34.4
Sc09g0009520 Simmondsia chinensis HOM05D005768 ORTHO05D007100 1.9e-06 57.0 59 50.8


User provided reference genes

Program Settings