Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G042900 Manihot esculenta HOM05D007047 ORTHO05D009177 3.3e-308 1060.8 527 100.0
Potri.003G080700 Populus trichocarpa HOM05D007047 ORTHO05D009177 2.1e-97 360.5 558 44.8
Sabra03G0052300 Salix brachista HOM05D007047 ORTHO05D009177 2.2e-86 323.9 565 43.2
Thecc.03G244500 Theobroma cacao HOM05D007047 ORTHO05D009177 7.7e-63 245.7 540 37.2
QL12p009685 Quercus lobata HOM05D007047 ORTHO05D009177 1.0e-62 245.4 553 36.7
Prupe.4G179300 Prunus persica HOM05D007047 ORTHO05D009177 2.0e-58 231.1 536 34.7
QL12p009257 Quercus lobata HOM05D007047 ORTHO05D009177 2.0e-58 231.1 560 35.4
COL.COLO4_10022 Corchorus olitorius HOM05D007047 ORTHO05D009177 5.9e-55 219.5 537 35.2
CiPaw.12G048400 Carya illinoinensis HOM05D007047 ORTHO05D009177 2.8e-49 200.7 464 36.2
Atru.chr9.1243 Acer truncatum HOM05D007047 ORTHO05D009177 1.2e-47 195.3 550 34.0
Dinv28849 Davidia involucrata HOM05D007047 ORTHO05D006202 1.2e-47 195.3 555 33.0
FAN24G2075 Fragaria x ananassa HOM05D007047 ORTHO05D009177 1.6e-47 194.9 566 30.7
FvH4_2g33151 Fragaria vesca HOM05D007047 ORTHO05D009177 2.0e-47 194.5 556 31.3
MD06G1050900 Malus domestica HOM05D007047 ORTHO05D009177 5.9e-47 193.0 546 30.8
FAN08G2081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 1.9e-45 188.0 563 30.4
Ciclev10024423m.g Citrus clementina HOM05D007047 ORTHO05D009177 1.0e-43 182.2 530 30.8
RcHm_v2.0_Chr7g0204751 Rosa chinensis HOM05D007047 ORTHO05D009177 8.9e-43 179.1 556 31.7
Duzib205G0846 Durio zibethinus HOM05D007047 ORTHO05D009177 2.0e-42 177.9 455 35.2
TWI60G0889 Tripterygium wilfordii HOM05D007047 ORTHO05D009177 1.7e-41 174.9 544 32.0
PGR031G1177 Punica granatum HOM05D007047 ORTHO05D009177 6.4e-41 172.9 550 31.6
FAN04G0327 Fragaria x ananassa HOM05D007047 ORTHO05D009177 3.5e-39 167.2 556 29.3
CSS0008245 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 7.8e-39 166.0 451 33.3
Haze_07962 Corylus avellana HOM05D007047 ORTHO05D009177 1.7e-38 164.9 436 32.6
Sp7g17290 Schrenkiella parvula HOM05D007047 ORTHO05D009177 7.3e-37 159.5 528 30.5
Actinidia31505 Actinidia chinensis HOM05D007047 ORTHO05D006202 9.5e-37 159.1 466 33.9
Hma1.2p1_0821F.1_g224180 Hydrangea macrophylla HOM05D007047 ORTHO05D009177 8.0e-36 156.0 447 30.9
Carub.0007s2455 Capsella rubella HOM05D007047 ORTHO05D009177 1.8e-35 154.8 530 30.0
TAR375G0331 Trochodendron aralioides HOM05D007047 ORTHO05D009177 3.4e-34 150.6 364 34.9
Gorai.004G194800 Gossypium raimondii HOM05D007047 ORTHO05D009177 1.3e-33 148.7 544 28.9
THA.LOC104807915 Tarenaya hassleriana HOM05D007047 ORTHO05D009177 1.3e-33 148.7 537 30.9
GSVIVG01004793001 Vitis vinifera HOM05D000549 ORTHO05D006202 3.7e-33 147.1 351 36.5
Gohir.A08G166600 Gossypium hirsutum HOM05D007047 ORTHO05D009177 4.9e-33 146.7 533 27.8
BcaB04g18396 Brassica carinata HOM05D007047 ORTHO05D006202 1.9e-32 144.8 533 30.2
MELO3C013912.2 Cucumis melo HOM05D007047 ORTHO05D009177 1.9e-32 144.8 442 31.7
CANSAT21G2499 Cannabis sativa HOM05D007047 ORTHO05D009177 2.0e-31 141.4 471 31.4
ClCG10G002400 Citrullus lanatus HOM05D007047 ORTHO05D009177 2.7e-31 141.0 436 30.3
PGSC0003DMG400024159 Solanum tuberosum HOM05D007047 ORTHO05D009177 2.7e-31 141.0 557 30.0
CsaV3_3G002430 Cucumis sativus L. HOM05D007047 ORTHO05D009177 2.3e-30 137.9 444 32.7
Glyma.01G206100 Glycine max HOM05D007047 ORTHO05D009177 3.0e-30 137.5 455 33.0
A08p12720 Brassica napus HOM05D007047 ORTHO05D006202 8.6e-30 136.0 534 29.0
SGA_v2.0_scaffold104G30204 Striga asiatica HOM05D007047 ORTHO05D009177 1.5e-29 135.2 463 32.4
BraA08t33261Z Brassica rapa HOM05D007047 ORTHO05D009177 2.5e-29 134.4 522 29.3
CARHR223430 Cardamine hirsuta HOM05D007047 ORTHO05D009177 3.3e-29 134.0 551 29.2
Nn6g33825 Nelumbo nucifera HOM05D007047 ORTHO05D009177 4.3e-29 133.7 340 34.7
Gohir.D08G185400 Gossypium hirsutum HOM05D007047 ORTHO05D009177 1.6e-28 131.7 312 34.0
Phvul.002G000400 Phaseolus vulgaris HOM05D007047 ORTHO05D009177 1.6e-28 131.7 449 32.7
TPR.G17974 Trifolium pratense HOM05D007047 ORTHO05D009177 1.6e-28 131.7 446 31.8
Ah.10g026860 Amaranthus hybridus HOM05D007047 ORTHO05D009177 2.1e-28 131.3 441 29.5
Dinv39189 Davidia involucrata HOM05D000549 ORTHO05D006202 2.8e-28 131.0 219 41.6
BolC8t48412H Brassica oleracea HOM05D007047 ORTHO05D009177 5.2e-27 126.7 536 27.2
Psat2g177160 Pisum sativum HOM05D007047 ORTHO05D009177 6.8e-27 126.3 438 32.4
Nitab4.5_0000506g0030 Nicotiana tabacum HOM05D007047 ORTHO05D009177 8.9e-27 125.9 544 30.1
Medtr5g013140 Medicago truncatula HOM05D007047 ORTHO05D009177 2.6e-26 124.4 441 30.2
Aa31LG2G12990 Aethionema arabicum HOM05D007047 ORTHO05D009177 5.8e-26 123.2 525 26.7
AUR62006813 Chenopodium quinoa HOM05D007047 ORTHO05D009177 5.8e-26 123.2 548 29.4
Thhalv10027153m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 1.3e-25 122.1 487 27.5
AUR62000471 Chenopodium quinoa HOM05D007047 ORTHO05D009177 3.7e-25 120.6 538 27.5
Oeu045687.1 Olea europaea HOM05D007047 ORTHO05D009177 3.7e-25 120.6 463 30.7
VMungo1215G0554 Vigna mungo HOM05D002164 ORTHO05D002267 4.9e-25 120.2 537 26.4
CAN.G62.14 Capsicum annuum HOM05D007047 ORTHO05D009177 6.4e-25 119.8 455 29.9
Solyc06g060860.2 Solanum lycopersicum HOM05D007047 ORTHO05D009177 6.4e-25 119.8 553 27.7
BcaC07g38023 Brassica carinata HOM05D007047 ORTHO05D009177 7.1e-24 116.3 543 26.7
SalBow6G1440 Salvia bowleyana HOM05D007047 ORTHO05D009177 1.6e-23 115.2 548 27.0
Ca_24599_v3 Cicer arietinum L. HOM05D007047 ORTHO05D009177 2.7e-23 114.4 462 29.7
Migut.A01028 Erythranthe guttata HOM05D007047 ORTHO05D009177 2.7e-23 114.4 458 27.7
Rhsim07G0117200 Rhododendron simsii HOM05D007047 ORTHO05D009177 3.5e-23 114.0 451 29.3
Hund11335 Selenicereus undatus HOM05D007047 ORTHO05D009177 3.5e-23 114.0 456 28.9
Sopen06g021010 Solanum pennellii HOM05D007047 ORTHO05D009177 1.0e-22 112.5 528 28.4
arahy.Tifrunner.gnm1.ann1.J4EMKX Arachis hypogaea HOM05D007047 ORTHO05D009177 2.3e-22 111.3 458 28.4
arahy.Tifrunner.gnm1.ann1.XH35PM Arachis hypogaea HOM05D007047 ORTHO05D009177 2.3e-22 111.3 458 28.4
Lalb_Chr16g0379431 Lupinus albus HOM05D007047 ORTHO05D009177 2.3e-22 111.3 438 28.1
Ciclev10019636m.g Citrus clementina HOM05D000549 ORTHO05D006202 3.0e-22 110.9 256 34.8
AL7G37840 Arabidopsis lyrata HOM05D007047 ORTHO05D009177 5.1e-22 110.2 477 27.0
Peaxi162Scf00190g01213 Petunia axillaris HOM05D007047 ORTHO05D009177 1.5e-21 108.6 523 24.9
CSS0009500 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 1.9e-21 108.2 439 30.1
AT4G16807 Arabidopsis thaliana HOM05D007047 ORTHO05D009177 4.3e-21 107.1 526 26.6
DCAR_000643 Daucus carota HOM05D007047 ORTHO05D009177 5.6e-21 106.7 590 26.1
Nitab4.5_0006375g0010 Nicotiana tabacum HOM05D007047 ORTHO05D009177 7.3e-21 106.3 535 28.6
Sed0008627 Sechium edule HOM05D007047 ORTHO05D009177 2.1e-20 104.8 331 30.5
MSTRG.25515 Avicennia marina HOM05D007047 ORTHO05D009177 3.6e-20 104.0 446 27.4
Lj2g0019775 Lotus japonicus HOM05D007047 ORTHO05D009177 3.6e-20 104.0 461 28.9
PSO063G2347 Papaver somniferum HOM05D007047 ORTHO05D009177 1.8e-19 101.7 491 27.5
Cpa.g.sc89.13 Carica papaya HOM05D007047 ORTHO05D009177 1.2e-18 99.0 149 43.0
Rhsim07G0117500 Rhododendron simsii HOM05D007047 ORTHO05D009177 7.6e-18 96.3 348 30.7
Aqoxy3G02722 Aquilegia oxysepala HOM05D007047 ORTHO05D009177 1.3e-17 95.5 454 26.0
Cpa.g.sc559.1 Carica papaya HOM05D007047 ORTHO05D009177 6.4e-17 93.2 332 30.4
Eucgr.D02116 Eucalyptus grandis HOM05D007047 ORTHO05D009177 8.4e-17 92.8 333 27.9
EL10Ac4g09553 Beta vulgaris HOM05D007047 ORTHO05D009177 1.9e-16 91.7 451 27.3
Cc08_g11870 Coffea canephora HOM05D000549 ORTHO05D006202 7.1e-16 89.7 204 30.9
Oeu045675.1 Olea europaea HOM05D007047 ORTHO05D009177 1.2e-15 89.0 351 29.6
FAN20G0731 Fragaria x ananassa HOM05D007047 ORTHO05D009177 6.0e-15 86.7 333 27.3
FAN27G3081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 7.8e-15 86.3 323 28.5
Medtr5g013080 Medicago truncatula HOM05D007047 ORTHO05D009177 2.4e-11 74.7 53 62.3
Cpa.g.sc1463.1 Carica papaya HOM05D007047 ORTHO05D009177 6.8e-11 73.2 108 44.4
Sc07g0009150 Simmondsia chinensis HOM05D007047 ORTHO05D009177 6.8e-11 73.2 220 33.2
HPP92_022107 Vanilla planifolia HOM05D007047 ORTHO05D009177 7.6e-10 69.7 117 36.8
Psat2g156960 Pisum sativum HOM05D007047 ORTHO05D009177 9.9e-10 69.3 132 39.4
FvH4_5g19900 Fragaria vesca HOM05D007047 ORTHO05D009177 2.2e-09 68.2 132 37.1
unitig_744.g24476 Utricularia gibba HOM05D007047 ORTHO05D009177 1.1e-08 65.9 167 35.9
Psat0s1776g0120 Pisum sativum HOM05D007047 ORTHO05D009177 2.4e-08 64.7 163 31.9
Thhalv10027163m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 7.1e-08 63.2 86 41.9
ECA240G0572 Erigeron canadensis HOM05D007047 ORTHO05D009177 2.1e-07 61.6 352 26.1
CAN.G62.13 Capsicum annuum HOM05D007047 ORTHO05D009177 7.8e-07 59.7 37 73.0
Lsat_1_v5_gn_4_126100 Lactuca sativa HOM05D007047 ORTHO05D009177 1.0e-06 59.3 357 26.6
FAN18G3996 Fragaria x ananassa HOM05D007047 ORTHO05D009177 1.3e-06 58.9 96 38.5
HanXRQChr11g0329491 Helianthus annuus HOM05D007047 ORTHO05D009177 3.9e-06 57.4 74 45.9
Zm00001eb428340 Zea mays HOM05D007047 ORTHO05D009177 3.9e-06 57.4 476 23.7


User provided reference genes

Program Settings