Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G042000 Manihot esculenta HOM05D006400 ORTHO05D008039 2.2e-107 393.3 381 100.0
Manes.14G149022 Manihot esculenta HOM05D006400 ORTHO05D008039 1.1e-82 311.2 384 55.5
Sabra01G0124300 Salix brachista HOM05D006400 ORTHO05D008039 4.6e-57 226.1 378 66.1
Sabra01G0124400 Salix brachista HOM05D006400 ORTHO05D008039 4.6e-57 226.1 378 66.1
Sabra01G0124500 Salix brachista HOM05D006400 ORTHO05D008039 4.6e-57 226.1 378 66.1
COL.COLO4_37104 Corchorus olitorius HOM05D006400 ORTHO05D008039 6.2e-54 215.7 379 76.3
Prupe.4G276000 Prunus persica HOM05D006400 ORTHO05D008039 6.8e-53 212.2 381 62.2
Haze_02836 Corylus avellana HOM05D006400 ORTHO05D008039 3.4e-52 209.9 379 68.1
QL09p046276 Quercus lobata HOM05D006400 ORTHO05D008039 1.7e-51 207.6 375 72.8
Potri.001G154901 Populus trichocarpa HOM05D006400 ORTHO05D008039 2.9e-51 206.8 378 63.8
MD04G1061400 Malus domestica HOM05D006400 ORTHO05D008039 1.2e-49 201.4 378 73.0
RcHm_v2.0_Chr7g0204361 Rosa chinensis HOM05D006400 ORTHO05D008039 6.0e-49 199.1 379 55.9
Ciclev10019985m.g Citrus clementina HOM05D006400 ORTHO05D008039 7.8e-49 198.7 379 72.6
vmacro00015 Vaccinium macrocarpon HOM05D006400 ORTHO05D008039 1.0e-48 198.4 379 73.6
CSS0025678 Camellia sinensis var. sinensis HOM05D006400 ORTHO05D008039 3.0e-48 196.8 378 75.1
Thecc.03G246700 Theobroma cacao HOM05D006400 ORTHO05D008039 3.9e-48 196.4 379 74.1
Atru.chr9.1257 Acer truncatum HOM05D006400 ORTHO05D008039 6.6e-48 195.7 379 71.8
FAN18G2780 Fragaria x ananassa HOM05D006400 ORTHO05D008039 1.9e-47 194.1 375 70.9
SHI09587 Sapria himalayana HOM05D006400 ORTHO05D008039 9.6e-47 191.8 365 49.3
TWI15G0916 Tripterygium wilfordii HOM05D006400 ORTHO05D008039 2.1e-46 190.7 378 71.4
CANSAT25G0610 Cannabis sativa HOM05D006400 ORTHO05D008039 3.6e-46 189.9 371 73.3
FvH4_5g19630 Fragaria vesca HOM05D006400 ORTHO05D008039 3.6e-46 189.9 375 71.7
MD06G1055200 Malus domestica HOM05D006400 ORTHO05D008039 1.1e-45 188.3 378 65.6
FAN08G3355 Fragaria x ananassa HOM05D006400 ORTHO05D008039 1.8e-45 187.6 375 68.3
TAR628G0792 Trochodendron aralioides HOM05D006400 ORTHO05D008039 2.9e-43 180.3 379 63.9
Duzib068G0402 Durio zibethinus HOM05D006400 ORTHO05D008039 4.9e-43 179.5 343 78.4
Eucgr.E00397 Eucalyptus grandis HOM05D006400 ORTHO05D008039 1.1e-42 178.3 371 72.8
Sed0010566 Sechium edule HOM05D006400 ORTHO05D008039 1.9e-42 177.6 378 65.9
Gorai.007G029300 Gossypium raimondii HOM05D006400 ORTHO05D008039 5.4e-42 176.0 378 61.4
Gorai.003G033700 Gossypium raimondii HOM05D006400 ORTHO05D008039 9.3e-42 175.3 378 63.0
Gohir.D11G026800 Gossypium hirsutum HOM05D006400 ORTHO05D008039 1.2e-41 174.9 378 61.4
TAR628G0558 Trochodendron aralioides HOM05D006400 ORTHO05D008039 2.7e-41 173.7 379 61.5
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 4.6e-41 172.9 353 73.7
BolC7t43646H Brassica oleracea HOM05D006400 ORTHO05D008039 7.8e-41 172.2 374 47.3
Gohir.D03G032200 Gossypium hirsutum HOM05D006400 ORTHO05D008039 7.8e-41 172.2 378 62.2
Cpa.g.sc89.62 Carica papaya HOM05D006400 ORTHO05D008039 1.0e-40 171.8 378 66.1
GSVIVG01007151001 Vitis vinifera HOM05D006400 ORTHO05D008039 1.7e-40 171.0 380 71.1
A06p45130 Brassica napus HOM05D006400 ORTHO05D008039 3.0e-40 170.2 374 47.6
BraA06t27383Z Brassica rapa HOM05D006400 ORTHO05D008039 3.0e-40 170.2 374 47.6
ClCG06G010030 Citrullus lanatus HOM05D006400 ORTHO05D008039 8.7e-40 168.7 378 65.6
Dinv25846 Davidia involucrata HOM05D006400 ORTHO05D008039 8.7e-40 168.7 380 69.5
VMungo1127G0679 Vigna mungo HOM05D006400 ORTHO05D008039 8.7e-40 168.7 379 52.5
Gohir.A02G148300 Gossypium hirsutum HOM05D006400 ORTHO05D008039 1.1e-39 168.3 378 54.0
Sp2g12080 Schrenkiella parvula HOM05D006400 ORTHO05D008039 1.5e-39 167.9 381 49.3
Phvul.011G001300 Phaseolus vulgaris HOM05D006400 ORTHO05D008039 1.6e-38 164.5 378 50.8
C07p31010 Brassica napus HOM05D006400 ORTHO05D008039 6.2e-38 162.5 374 46.8
Thhalv10000870m.g Eutrema salsugineum HOM05D006400 ORTHO05D008039 8.1e-38 162.2 382 43.7
THA.LOC104810088 Tarenaya hassleriana HOM05D006400 ORTHO05D008039 8.1e-38 162.2 371 49.6
Carub.0008s0042 Capsella rubella HOM05D006400 ORTHO05D008039 4.0e-37 159.8 374 45.2
Aa31csc39G30 Aethionema arabicum HOM05D006400 ORTHO05D008039 1.2e-36 158.3 378 48.1
AL8G10680 Arabidopsis lyrata HOM05D006400 ORTHO05D008039 1.5e-36 157.9 374 46.5
BcaC06g31395 Brassica carinata HOM05D006400 ORTHO05D008039 2.6e-36 157.1 372 50.8
CARHR174040 Cardamine hirsuta HOM05D006400 ORTHO05D008039 2.6e-36 157.1 375 45.3
DCAR_009350 Daucus carota HOM05D006400 ORTHO05D008039 4.4e-36 156.4 371 56.6
Ca_22891_v3 Cicer arietinum L. HOM05D006400 ORTHO05D008039 5.8e-36 156.0 378 60.1
CsaV3_2G011310 Cucumis sativus L. HOM05D006400 ORTHO05D008039 9.9e-36 155.2 378 59.5
PGR042G3373 Punica granatum HOM05D006400 ORTHO05D008039 2.9e-35 153.7 379 58.6
Aqoxy3G01604 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 3.8e-35 153.3 378 67.2
Lj3C13G5 Lonicera japonica HOM05D006400 ORTHO05D008039 8.4e-35 152.1 371 51.5
PGR042G3592 Punica granatum HOM05D006400 ORTHO05D008039 3.2e-34 150.2 379 68.6
CiPaw.16G085600 Carya illinoinensis HOM05D006400 ORTHO05D008039 4.2e-34 149.8 379 69.1
AT5G47360 Arabidopsis thaliana HOM05D006400 ORTHO05D008039 9.3e-34 148.7 374 48.7
CAN.G1312.18 Capsicum annuum HOM05D006400 ORTHO05D008039 1.2e-33 148.3 378 47.9
Oeu052953.1 Olea europaea HOM05D006400 ORTHO05D008039 1.6e-33 147.9 378 58.5
Glyma.08G238900 Glycine max HOM05D006400 ORTHO05D008039 2.1e-33 147.5 379 49.3
Glyma.15G265000 Glycine max HOM05D006400 ORTHO05D008039 1.3e-32 144.8 379 49.6
Gohir.A11G027600 Gossypium hirsutum HOM05D006400 ORTHO05D008039 2.3e-32 144.1 104 67.3
Hma1.2p1_1196F.1_g266040 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 5.1e-32 142.9 354 62.1
HanXRQChr17g0533241 Helianthus annuus HOM05D006400 ORTHO05D008039 1.1e-31 141.7 372 68.3
Rhsim13G0212900 Rhododendron simsii HOM05D006400 ORTHO05D008039 2.5e-31 140.6 351 71.8
TPR.G5570 Trifolium pratense HOM05D006400 ORTHO05D008039 3.3e-31 140.2 378 65.1
EL10Ac5g12550 Beta vulgaris HOM05D006400 ORTHO05D008039 4.8e-30 136.3 366 56.6
MSTRG.24505 Avicennia marina HOM05D006400 ORTHO05D008039 8.1e-30 135.6 378 56.1
Lsat_1_v5_gn_4_109281 Lactuca sativa HOM05D006400 ORTHO05D008039 1.2e-28 131.7 372 64.5
Ah.01g005640 Amaranthus hybridus HOM05D006400 ORTHO05D008039 2.0e-28 131.0 370 53.2
Lalb_Chr09g0323451 Lupinus albus HOM05D006400 ORTHO05D008039 3.4e-28 130.2 375 51.5
Medtr4g021220 Medicago truncatula HOM05D006400 ORTHO05D008039 1.3e-27 128.3 369 57.2
MELO3C008512.2 Cucumis melo HOM05D006400 ORTHO05D008039 6.4e-27 125.9 378 55.8
BcaC06g34259 Brassica carinata HOM05D006400 ORTHO05D008039 8.4e-27 125.6 334 31.7
Lj3g0022967 Lotus japonicus HOM05D006400 ORTHO05D008039 2.4e-26 124.0 377 51.2
Migut.N02973 Erythranthe guttata HOM05D006400 ORTHO05D008039 3.2e-26 123.6 379 49.1
Cc08_g12000 Coffea canephora HOM05D006400 ORTHO05D008039 2.1e-25 120.9 378 57.1
DCAR_028626 Daucus carota HOM05D006400 ORTHO05D008039 2.1e-25 120.9 350 64.9
MBI10_g34776_MAGBIO Magnolia biondii HOM05D000931 ORTHO05D001924 6.0e-25 119.4 379 64.1
FAN13G1818 Fragaria x ananassa HOM05D006400 ORTHO05D008039 2.3e-24 117.5 101 57.4
Hund12818 Selenicereus undatus HOM05D006400 ORTHO05D008039 3.3e-23 113.6 378 63.0
Sc01g0008230 Simmondsia chinensis HOM05D006400 ORTHO05D008039 8.1e-22 109.0 104 51.0
BcaC06g31398 Brassica carinata HOM05D006400 ORTHO05D008039 1.8e-21 107.8 96 51.0
SGA_v2.0_scaffold54G19637 Striga asiatica HOM05D006400 ORTHO05D008039 3.4e-20 103.6 378 43.9
arahy.Tifrunner.gnm1.ann1.S7MQ4D Arachis hypogaea HOM05D006400 ORTHO05D008039 1.0e-19 102.1 375 45.3
Nitab4.5_0002601g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 3.8e-19 100.1 379 42.5
Solyc08g078280.1 Solanum lycopersicum HOM05D006400 ORTHO05D008039 4.9e-19 99.8 378 44.2
Gohir.D02G148280 Gossypium hirsutum HOM05D006400 ORTHO05D008039 6.5e-19 99.4 86 55.8
AUR62018329 Chenopodium quinoa HOM05D006400 ORTHO05D008039 2.5e-18 97.4 103 47.6
Hma1.2p1_1196F.1_g266060 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 4.2e-18 96.7 74 58.1
VMungo0251G3116 Vigna mungo HOM05D006400 ORTHO05D008039 4.2e-18 96.7 95 50.5
Gorai.005G166300 Gossypium raimondii HOM05D006400 ORTHO05D008039 5.5e-18 96.3 87 54.0
QL01p026672 Quercus lobata HOM05D006400 ORTHO05D008039 7.1e-18 95.9 93 53.8
AUR62035870 Chenopodium quinoa HOM05D006400 ORTHO05D008039 9.3e-18 95.5 105 45.7
Gohir.A03G125450 Gossypium hirsutum HOM05D006400 ORTHO05D008039 1.2e-17 95.1 86 57.0
PGSC0003DMG400039297 Solanum tuberosum HOM05D006400 ORTHO05D008039 1.2e-17 95.1 378 45.8
Nn4g24039 Nelumbo nucifera HOM05D006400 ORTHO05D008039 1.6e-17 94.7 86 51.2
Nitab4.5_0007283g0050 Nicotiana tabacum HOM05D006400 ORTHO05D008039 2.1e-17 94.4 379 53.0
Aqoxy6G02102 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 8.7e-16 89.0 92 44.6
Peaxi162Scf00346g00056 Petunia axillaris HOM05D006400 ORTHO05D008039 8.7e-16 89.0 104 44.2
AUR62035872 Chenopodium quinoa HOM05D000268 ORTHO05D008039 2.5e-15 87.4 92 46.7
Sopen08g026780 Solanum pennellii HOM05D006400 ORTHO05D008039 7.4e-15 85.9 378 50.0
Actinidia14396 Actinidia chinensis HOM05D006400 ORTHO05D008039 1.3e-14 85.1 68 57.4
Peaxi162Scf00017g03140 Petunia axillaris HOM05D006400 ORTHO05D008039 2.8e-14 84.0 81 51.9
ECA236G1262 Erigeron canadensis HOM05D006400 ORTHO05D008039 3.7e-14 83.6 83 50.6
FAN04G1593 Fragaria x ananassa HOM05D006400 ORTHO05D008039 2.4e-13 80.9 170 78.2
Lsat_1_v5_gn_4_109201 Lactuca sativa HOM05D006400 ORTHO05D008039 5.3e-13 79.7 70 55.7
SalBow1G4333 Salvia bowleyana HOM05D006400 ORTHO05D008039 6.9e-13 79.3 82 43.9
Nitab4.5_0010304g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 2.6e-12 77.4 355 54.6
Psat7g239440 Pisum sativum HOM05D006400 ORTHO05D008039 3.4e-12 77.0 66 54.5
PSO541G3795 Papaver somniferum HOM05D006400 ORTHO05D008039 3.2e-10 70.5 109 39.4
Peaxi162Scf00242g00094 Petunia axillaris HOM05D006400 ORTHO05D008039 3.2e-10 70.5 72 48.6
ATR0697G201 Amborella trichopoda HOM05D006400 ORTHO05D008039 2.1e-09 67.8 100 42.0
PSO675G7384 Papaver somniferum HOM05D006400 ORTHO05D008039 2.7e-09 67.4 104 38.5
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 2.7e-09 67.4 51 62.7
Zm00001eb009290 Zea mays HOM05D006400 ORTHO05D008039 4.6e-09 66.6 103 37.9
Os03g0225300 Oryza sativa ssp. japonica HOM05D006400 ORTHO05D008039 1.8e-08 64.7 103 36.9
SEGI_21761 Sequoiadendron giganteum HOM05D006400 ORTHO05D008039 1.9e-07 61.2 64 37.5
CDE05G0339 Ceratophyllum demersum HOM05D006400 ORTHO05D008039 2.5e-07 60.8 56 50.0
TPR.G39692 Trifolium pratense HOM05D006400 ORTHO05D008039 2.2e-06 57.8 48 47.9


User provided reference genes

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