Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G041000 Manihot esculenta HOM05D007712 ORTHO05D009755 3.1e-23 110.9 56 100.0
Prupe.5G067000 Prunus persica HOM05D007712 ORTHO05D009755 1.9e-20 101.7 54 88.9
CSS0007152 Camellia sinensis var. sinensis HOM05D007712 ORTHO05D009755 3.3e-20 100.9 54 88.9
MD06G1056600 Malus domestica HOM05D007712 ORTHO05D009755 3.3e-20 100.9 54 88.9
Thecc.03G249200 Theobroma cacao HOM05D007712 ORTHO05D009755 3.3e-20 100.9 54 88.9
Manes.01G082000 Manihot esculenta HOM05D007712 ORTHO05D009755 5.6e-20 100.1 52 92.3
Gohir.D12G218700 Gossypium hirsutum HOM05D007712 ORTHO05D009755 1.2e-19 99.0 54 87.0
Gorai.008G234300 Gossypium raimondii HOM05D007712 ORTHO05D009755 1.2e-19 99.0 54 87.0
MD04G1062500 Malus domestica HOM05D007712 ORTHO05D009755 1.6e-19 98.6 54 85.2
CSS0012443 Camellia sinensis var. sinensis HOM05D007712 ORTHO05D009755 6.1e-19 96.7 52 86.5
COL.COLO4_37150 Corchorus olitorius HOM05D007712 ORTHO05D009755 6.1e-19 96.7 52 88.5
Medtr4g100770 Medicago truncatula HOM05D007712 ORTHO05D009755 1.0e-18 95.9 54 83.3
Cpa.g.sc29.177 Carica papaya HOM05D007712 ORTHO05D009755 1.4e-18 95.5 52 86.5
Nn1g00955 Nelumbo nucifera HOM05D007712 ORTHO05D009755 1.4e-18 95.5 54 85.2
Gohir.A12G216100 Gossypium hirsutum HOM05D007712 ORTHO05D009755 1.8e-18 95.1 52 86.5
CARHR223220 Cardamine hirsuta HOM05D007712 ORTHO05D009755 3.1e-18 94.4 54 83.3
Haze_07896 Corylus avellana HOM05D007712 ORTHO05D009755 3.1e-18 94.4 52 86.5
Duzib205G0100 Durio zibethinus HOM05D007712 ORTHO05D009755 3.1e-18 94.4 52 86.5
Glyma.05G061200 Glycine max HOM05D007712 ORTHO05D009755 3.1e-18 94.4 52 84.6
Glyma.17G143000 Glycine max HOM05D007712 ORTHO05D009755 3.1e-18 94.4 52 84.6
Psat4g072600 Pisum sativum HOM05D007712 ORTHO05D009755 3.1e-18 94.4 54 83.3
RcHm_v2.0_Chr7g0203631 Rosa chinensis HOM05D007712 ORTHO05D009755 3.1e-18 94.4 54 83.3
TWI60G0592 Tripterygium wilfordii HOM05D007712 ORTHO05D009755 3.1e-18 94.4 54 85.2
Ca_21974_v3 Cicer arietinum L. HOM05D007712 ORTHO05D009755 4.0e-18 94.0 55 81.8
Nn6g33914 Nelumbo nucifera HOM05D007712 ORTHO05D009755 5.2e-18 93.6 54 83.3
AL7G38040 Arabidopsis lyrata HOM05D007712 ORTHO05D009755 8.9e-18 92.8 54 81.5
Duzib068G1393 Durio zibethinus HOM05D007712 ORTHO05D009755 8.9e-18 92.8 52 86.5
PSO063G7306 Papaver somniferum HOM05D007712 ORTHO05D009755 8.9e-18 92.8 54 79.6
Potri.001G156500 Populus trichocarpa HOM05D007712 ORTHO05D009755 1.5e-17 92.0 53 88.7
AT4G16695 Arabidopsis thaliana HOM05D007712 ORTHO05D009755 2.0e-17 91.7 54 79.6
Ciclev10023737m.g Citrus clementina HOM05D007712 ORTHO05D009755 2.0e-17 91.7 50 86.0
DCAR_006839 Daucus carota HOM05D007712 ORTHO05D009755 2.0e-17 91.7 52 80.8
Lj4g0003995 Lotus japonicus HOM05D007712 ORTHO05D009755 2.0e-17 91.7 55 80.0
Potri.003G078100 Populus trichocarpa HOM05D007712 ORTHO05D009755 2.0e-17 91.7 52 82.7
VMungo0251G2826 Vigna mungo HOM05D007712 ORTHO05D009755 2.0e-17 91.7 53 81.1
Aa31LG2G12880 Aethionema arabicum HOM05D007712 ORTHO05D009755 2.6e-17 91.3 52 82.7
Hma1.2p1_0316F.1_g122970 Hydrangea macrophylla HOM05D007712 ORTHO05D009755 2.6e-17 91.3 52 84.6
DCAR_008500 Daucus carota HOM05D007712 ORTHO05D009755 3.4e-17 90.9 52 78.8
Carub.0007s2470 Capsella rubella HOM05D007712 ORTHO05D009755 4.4e-17 90.5 52 82.7
CiPaw.11G080700 Carya illinoinensis HOM05D007712 ORTHO05D009755 4.4e-17 90.5 54 83.3
BcaNung00160 Brassica carinata HOM05D007712 ORTHO05D009755 5.8e-17 90.1 52 80.8
ClCG01G004140 Citrullus lanatus HOM05D007712 ORTHO05D009755 5.8e-17 90.1 53 81.1
PSO782G1928 Papaver somniferum HOM05D007712 ORTHO05D009755 9.8e-17 89.4 52 80.8
Sp7g15330 Schrenkiella parvula HOM05D007712 ORTHO05D009755 1.7e-16 88.6 52 80.8
C01p25890 Brassica napus HOM05D007712 ORTHO05D009755 2.2e-16 88.2 52 76.9
Phvul.003G221800 Phaseolus vulgaris HOM05D007712 ORTHO05D009755 2.2e-16 88.2 52 80.8
EL10Ac5g12378 Beta vulgaris HOM05D007712 ORTHO05D009755 2.9e-16 87.8 52 78.8
Lsat_1_v5_gn_6_18000 Lactuca sativa HOM05D007712 ORTHO05D009755 3.7e-16 87.4 51 78.4
TAR629G1768 Trochodendron aralioides HOM05D007712 ORTHO05D009755 4.9e-16 87.0 54 77.8
CANSAT21G0844 Cannabis sativa HOM05D007712 ORTHO05D009755 6.4e-16 86.7 47 91.5
PGR031G2779 Punica granatum HOM05D007712 ORTHO05D009755 1.4e-15 85.5 47 83.0
HanXRQChr16g0510951 Helianthus annuus HOM05D007712 ORTHO05D009755 1.9e-15 85.1 56 73.2
Pp3c5_22940 Physcomitrium patens HOM05D007712 ORTHO05D009755 1.9e-15 85.1 53 75.5
ATR0317G046 Amborella trichopoda HOM05D007712 ORTHO05D009755 2.4e-15 84.7 52 73.1
CiPaw.12G051200 Carya illinoinensis HOM05D007712 ORTHO05D009755 3.2e-15 84.3 55 80.0
THA.LOC104815500 Tarenaya hassleriana HOM05D007712 ORTHO05D009755 4.1e-15 84.0 52 76.9
Mapoly0033s0142 Marchantia polymorpha HOM05D007712 ORTHO05D009755 5.4e-15 83.6 52 76.9
Nitab4.5_0002289g0090 Nicotiana tabacum HOM05D007712 ORTHO05D009755 5.4e-15 83.6 49 77.6
A01p20590 Brassica napus HOM05D007712 ORTHO05D009755 9.2e-15 82.8 50 76.0
BraA01t01987Z Brassica rapa HOM05D007712 ORTHO05D009755 9.2e-15 82.8 50 76.0
MELO3C005524.2 Cucumis melo HOM05D007712 ORTHO05D009755 9.2e-15 82.8 53 79.2
Solyc08g078480.3 Solanum lycopersicum HOM05D007712 ORTHO05D009755 9.2e-15 82.8 49 79.6
PGSC0003DMG402004821 Solanum tuberosum HOM05D007712 ORTHO05D009755 1.2e-14 82.4 49 77.6
Sed0021045 Sechium edule HOM05D007712 ORTHO05D009755 1.6e-14 82.0 53 77.4
BolC1t02534H Brassica oleracea HOM05D007712 ORTHO05D009755 3.5e-14 80.9 46 82.6
BcaC06g33508 Brassica carinata HOM05D007712 ORTHO05D009755 4.6e-14 80.5 52 76.9
C07p48200 Brassica napus HOM05D007712 ORTHO05D009755 4.6e-14 80.5 52 76.9
Eucgr.E00411 Eucalyptus grandis HOM05D007712 ORTHO05D009755 4.6e-14 80.5 60 71.7
Duzib268G1849 Durio zibethinus HOM05D007712 ORTHO05D009755 6.0e-14 80.1 54 70.4
Migut.A01117 Erythranthe guttata HOM05D007712 ORTHO05D009755 6.0e-14 80.1 57 73.7
HanXRQChr11g0345641 Helianthus annuus HOM05D007712 ORTHO05D009755 7.8e-14 79.7 47 78.7
Nitab4.5_0001381g0130 Nicotiana tabacum HOM05D007712 ORTHO05D009755 7.8e-14 79.7 47 78.7
BolC7t45343H Brassica oleracea HOM05D007712 ORTHO05D009755 1.0e-13 79.3 44 86.4
HanXRQChr13g0400821 Helianthus annuus HOM05D007712 ORTHO05D009755 1.3e-13 79.0 47 78.7
vmacro00192 Vaccinium macrocarpon HOM05D007712 ORTHO05D009755 1.7e-13 78.6 54 70.4
CAN.G1178.28 Capsicum annuum HOM05D007712 ORTHO05D009755 3.0e-13 77.8 48 72.9
Lalb_Chr16g0386781 Lupinus albus HOM05D007712 ORTHO05D009755 3.9e-13 77.4 54 72.2
HPP92_021033 Vanilla planifolia HOM05D007712 ORTHO05D009755 3.9e-13 77.4 50 76.0
HPP92_027434 Vanilla planifolia HOM05D007712 ORTHO05D009755 3.9e-13 77.4 50 76.0
Lalb_Chr05g0221211 Lupinus albus HOM05D007712 ORTHO05D009755 2.5e-12 74.7 54 68.5
BraA08t33255Z Brassica rapa HOM05D007712 ORTHO05D009755 3.3e-12 74.3 45 80.0
SHI02516 Sapria himalayana HOM05D007712 ORTHO05D009755 4.3e-12 73.9 52 73.1
CBR_g755 Chara braunii HOM05D007712 ORTHO05D009755 1.8e-10 68.6 53 60.4
unitig_744.g24472 Utricularia gibba HOM05D007712 ORTHO05D009755 6.8e-10 66.6 47 66.0
A03p50120 Brassica napus HOM05D007712 ORTHO05D009755 2.2e-08 61.6 46 65.2
THA.LOC104815513 Tarenaya hassleriana HOM05D007712 ORTHO05D009755 8.3e-08 59.7 34 85.3
FAN08G0196 Fragaria x ananassa HOM05D007712 ORTHO05D009755 1.1e-07 59.3 31 93.5
FAN04G1285 Fragaria x ananassa HOM05D007712 ORTHO05D009755 4.1e-07 57.4 31 90.3
Os03g0102000 Oryza sativa ssp. japonica HOM05D007712 ORTHO05D009755 5.4e-07 57.0 57 54.4


User provided reference genes

Program Settings