Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G040300 Manihot esculenta HOM05D006762 ORTHO05D003505 4.9e-27 124.4 99 100.0
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 5.8e-20 100.9 98 61.2
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 1.7e-19 99.4 98 59.2
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 1.7e-19 99.4 98 60.2
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 3.7e-19 98.2 99 62.6
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 6.4e-19 97.4 100 59.0
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 2.4e-18 95.5 99 59.6
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 3.2e-18 95.1 98 60.2
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 4.1e-18 94.7 98 60.2
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 4.1e-18 94.7 98 60.2
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 4.1e-18 94.7 98 60.2
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 7.0e-18 94.0 100 57.0
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 1.2e-17 93.2 101 57.4
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 1.2e-17 93.2 98 58.2
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 2.7e-17 92.0 100 56.0
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 2.7e-17 92.0 100 59.0
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 3.5e-17 91.7 100 56.0
Duzib084G1100 Durio zibethinus HOM05D006762 ORTHO05D003505 3.5e-17 91.7 99 58.6
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 3.5e-17 91.7 98 57.1
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 3.5e-17 91.7 98 57.1
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 3.5e-17 91.7 98 57.1
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 3.5e-17 91.7 99 57.6
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 4.6e-17 91.3 98 56.1
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 4.6e-17 91.3 98 56.1
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 1.0e-16 90.1 100 57.0
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 1.3e-16 89.7 101 54.5
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 1.3e-16 89.7 98 58.2
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 1.7e-16 89.4 100 54.0
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 1.7e-16 89.4 100 54.0
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 1.7e-16 89.4 100 54.0
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 5.0e-16 87.8 100 55.0
CiPaw.12G051800 Carya illinoinensis HOM05D006762 ORTHO05D003505 6.6e-16 87.4 98 55.1
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 6.6e-16 87.4 96 56.2
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 6.6e-16 87.4 102 52.9
TWI81G0572 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 6.6e-16 87.4 99 53.5
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 8.6e-16 87.0 96 56.2
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 1.1e-15 86.7 101 56.4
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 1.1e-15 86.7 101 56.4
Duzib205G1027 Durio zibethinus HOM05D006762 ORTHO05D003505 1.1e-15 86.7 100 56.0
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 1.1e-15 86.7 100 53.0
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 1.1e-15 86.7 100 53.0
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 1.5e-15 86.3 98 54.1
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 1.5e-15 86.3 99 53.5
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 2.5e-15 85.5 101 52.5
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 2.5e-15 85.5 103 51.5
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 7.3e-15 84.0 99 54.5
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 1.6e-14 82.8 98 52.0
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 2.1e-14 82.4 99 55.6
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 2.1e-14 82.4 102 52.9
Actinidia27471 Actinidia chinensis HOM05D006762 ORTHO05D003505 4.7e-14 81.3 102 52.0
Nn6g33933 Nelumbo nucifera HOM05D006762 ORTHO05D003505 8.1e-14 80.5 103 50.5
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 8.1e-14 80.5 99 49.5
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 1.1e-13 80.1 98 62.2
Cc08_g12340 Coffea canephora HOM05D006762 ORTHO05D003505 1.4e-13 79.7 101 64.4
Rhsim07G0109700 Rhododendron simsii HOM05D006762 ORTHO05D003505 1.4e-13 79.7 97 54.6
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 1.4e-13 79.7 98 50.0
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 1.8e-13 79.3 96 51.0
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 1.8e-13 79.3 98 53.1
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 2.3e-13 79.0 97 51.5
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 2.3e-13 79.0 96 52.1
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 4.0e-13 78.2 96 51.0
Lalb_Chr16g0386731 Lupinus albus HOM05D006762 ORTHO05D003505 4.0e-13 78.2 99 51.5
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 5.2e-13 77.8 98 49.0
ECA240G1429 Erigeron canadensis HOM05D006762 ORTHO05D003505 8.9e-13 77.0 100 61.0
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 8.9e-13 77.0 99 52.5
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 8.9e-13 77.0 96 52.1
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 1.2e-12 76.6 95 52.6
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 1.2e-12 76.6 98 48.0
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 1.2e-12 76.6 104 53.8
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 1.5e-12 76.3 96 51.0
CsaV3_3G002630 Cucumis sativus L. HOM05D006762 ORTHO05D003505 1.5e-12 76.3 99 49.5
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 2.0e-12 75.9 98 51.0
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 2.6e-12 75.5 99 51.5
TWI60G1284 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 2.6e-12 75.5 99 47.5
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 3.4e-12 75.1 97 49.5
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 3.4e-12 75.1 101 47.5
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 4.4e-12 74.7 99 51.5
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 4.4e-12 74.7 100 51.0
TPR.G37627 Trifolium pratense HOM05D006762 ORTHO05D003505 4.4e-12 74.7 99 50.5
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 5.8e-12 74.3 97 48.5
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 9.9e-12 73.6 96 52.1
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 1.3e-11 73.2 98 46.9
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 2.2e-11 72.4 96 49.0
THA.LOC104812806 Tarenaya hassleriana HOM05D006762 ORTHO05D003505 2.9e-11 72.0 96 50.0
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 4.9e-11 71.2 98 46.9
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 6.4e-11 70.9 42 88.1
Ca_21971_v3 Cicer arietinum L. HOM05D006762 ORTHO05D003505 8.3e-11 70.5 100 51.0
Dinv39153 Davidia involucrata HOM05D000502 ORTHO05D000356 8.3e-11 70.5 90 51.1
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 1.1e-10 70.1 98 75.5
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 1.9e-10 69.3 96 56.2
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 3.2e-10 68.6 96 47.9
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 5.4e-10 67.8 98 74.5
arahy.Tifrunner.gnm1.ann1.8JK4ZI Arachis hypogaea HOM05D006762 ORTHO05D003505 9.2e-10 67.0 40 87.5
arahy.Tifrunner.gnm1.ann1.A5XQNM Arachis hypogaea HOM05D006762 ORTHO05D003505 1.2e-09 66.6 43 81.4
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 1.2e-09 66.6 96 46.9
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.6e-09 66.2 98 44.9
CSS0021998 Camellia sinensis var. sinensis HOM05D006762 ORTHO05D003505 3.5e-09 65.1 98 48.0
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.3e-08 63.2 38 81.6
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 2.3e-08 62.4 92 40.2
arahy.Tifrunner.gnm1.ann1.QP3VPD Arachis hypogaea HOM05D006762 ORTHO05D003505 2.3e-08 62.4 43 81.4
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 1.1e-07 60.1 97 46.4
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 1.5e-07 59.7 98 40.8
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 1.5e-07 59.7 96 43.8
SEGI_29263 Sequoiadendron giganteum HOM05D006762 ORTHO05D003505 1.5e-07 59.7 42 69.0
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 3.3e-07 58.5 41 70.7
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 3.3e-07 58.5 41 70.7
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 3.3e-07 58.5 41 70.7
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 3.3e-07 58.5 41 70.7
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 3.3e-07 58.5 41 70.7
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 3.3e-07 58.5 41 70.7
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 4.3e-07 58.2 41 68.3
SalBow4G0096 Salvia bowleyana HOM05D006762 ORTHO05D003505 4.3e-07 58.2 89 46.1
SalBow4G2872 Salvia bowleyana HOM05D006762 ORTHO05D003505 4.3e-07 58.2 89 46.1
unitig_21.g20319 Utricularia gibba HOM05D006762 ORTHO05D003505 4.3e-07 58.2 42 71.4
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 5.6e-07 57.8 38 76.3
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 5.6e-07 57.8 38 76.3
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 5.6e-07 57.8 42 69.0
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 7.3e-07 57.4 98 41.8
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 7.3e-07 57.4 41 70.7
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 7.3e-07 57.4 41 70.7
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 1.2e-06 56.6 41 68.3
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.6e-06 56.2 40 70.0
arahy.Tifrunner.gnm1.ann1.D6ADVN Arachis hypogaea HOM05D006762 ORTHO05D003505 2.1e-06 55.8 40 77.5
Glyma.18G109000 Glycine max HOM05D006762 ORTHO05D003505 2.1e-06 55.8 95 43.2
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 2.8e-06 55.5 40 70.0
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 2.8e-06 55.5 41 68.3
Os02g0658300 Oryza sativa ssp. japonica HOM05D006762 ORTHO05D003505 2.8e-06 55.5 44 75.0
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 4.7e-06 54.7 41 65.9
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 8.1e-06 53.9 41 65.9
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 8.1e-06 53.9 38 68.4
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 8.1e-06 53.9 41 65.9
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 8.1e-06 53.9 98 40.8


User provided reference genes

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