Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 4.6e-91 337.8 164 100.0
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 5.2e-66 254.6 126 95.2
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 8.8e-66 253.8 126 93.7
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 3.3e-65 251.9 126 91.3
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 6.3e-64 247.7 126 92.1
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 8.2e-64 247.3 126 90.5
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 8.2e-64 247.3 127 92.1
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 1.1e-63 246.9 127 91.3
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 1.4e-63 246.5 126 91.3
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 1.4e-63 246.5 126 92.1
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 1.8e-63 246.1 127 89.8
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 2.4e-63 245.7 126 90.5
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 7.0e-63 244.2 126 89.7
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 1.2e-62 243.4 126 91.3
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 2.0e-62 242.7 125 91.2
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 2.7e-62 242.3 133 83.5
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 2.7e-62 242.3 126 88.1
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 3.5e-62 241.9 126 89.7
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 3.5e-62 241.9 135 82.2
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 3.5e-62 241.9 125 87.2
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 4.5e-62 241.5 126 88.9
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 5.9e-62 241.1 125 86.4
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 5.9e-62 241.1 126 89.7
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 7.7e-62 240.7 125 88.0
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 7.7e-62 240.7 125 88.0
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 7.7e-62 240.7 126 89.7
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 7.7e-62 240.7 126 89.7
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 1.3e-61 240.0 124 90.3
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 1.3e-61 240.0 130 86.9
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 1.3e-61 240.0 126 88.9
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.3e-61 240.0 126 88.9
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 1.3e-61 240.0 126 88.1
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 2.9e-61 238.8 126 87.3
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 3.8e-61 238.4 126 87.3
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 3.8e-61 238.4 126 88.1
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 5.0e-61 238.0 126 89.7
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 5.0e-61 238.0 126 89.7
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 5.0e-61 238.0 126 88.1
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 5.0e-61 238.0 124 88.7
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 5.0e-61 238.0 126 88.1
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 6.5e-61 237.7 126 89.7
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 6.5e-61 237.7 126 87.3
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 6.5e-61 237.7 126 87.3
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 6.5e-61 237.7 126 87.3
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 8.5e-61 237.3 126 88.9
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 8.5e-61 237.3 126 87.3
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 1.1e-60 236.9 126 88.9
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 1.9e-60 236.1 126 86.5
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 1.9e-60 236.1 125 86.4
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 5.5e-60 234.6 140 79.3
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 5.5e-60 234.6 126 86.5
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 5.5e-60 234.6 126 86.5
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 7.2e-60 234.2 146 77.4
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 7.2e-60 234.2 127 87.4
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 9.4e-60 233.8 126 85.7
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 9.4e-60 233.8 126 86.5
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 1.6e-59 233.0 162 71.0
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.6e-59 233.0 125 85.6
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 1.6e-59 233.0 141 76.6
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 2.1e-59 232.6 162 71.0
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 2.1e-59 232.6 126 86.5
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 2.1e-59 232.6 126 86.5
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 2.7e-59 232.3 126 86.5
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 2.7e-59 232.3 126 85.7
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 3.6e-59 231.9 126 85.7
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 3.6e-59 231.9 126 86.5
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 6.1e-59 231.1 126 86.5
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 6.1e-59 231.1 126 86.5
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 6.1e-59 231.1 126 86.5
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 6.1e-59 231.1 126 86.5
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 8.0e-59 230.7 126 85.7
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 8.0e-59 230.7 126 85.7
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 8.0e-59 230.7 126 85.7
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 1.0e-58 230.3 126 85.7
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 1.0e-58 230.3 126 85.7
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 1.0e-58 230.3 126 85.7
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 1.4e-58 229.9 127 87.4
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 1.8e-58 229.6 126 86.5
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 2.3e-58 229.2 126 85.7
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 2.3e-58 229.2 126 85.7
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 2.3e-58 229.2 126 84.9
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 3.0e-58 228.8 126 86.5
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 3.0e-58 228.8 125 84.8
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 5.2e-58 228.0 125 84.8
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 5.2e-58 228.0 126 84.1
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 6.8e-58 227.6 126 85.7
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 1.5e-57 226.5 126 83.3
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 1.5e-57 226.5 126 83.3
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 2.0e-57 226.1 126 84.9
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 2.0e-57 226.1 126 83.3
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 2.0e-57 226.1 126 83.3
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 3.4e-57 225.3 114 90.4
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 4.4e-57 224.9 126 83.3
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 2.8e-56 222.2 127 84.3
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 2.8e-56 222.2 126 81.7
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 4.8e-56 221.5 126 81.0
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 8.3e-56 220.7 126 84.1
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 1.8e-55 219.5 126 82.5
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 3.1e-55 218.8 124 83.1
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 3.1e-55 218.8 126 82.5
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 9.1e-55 217.2 126 82.5
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 1.2e-54 216.9 126 78.6
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 2.7e-54 215.7 126 80.2
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 3.8e-53 211.8 126 78.6
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 2.5e-52 209.1 107 91.6
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 3.3e-52 208.8 126 74.6
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 4.2e-52 208.4 112 85.7
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 4.7e-51 204.9 107 88.8
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 6.1e-51 204.5 107 89.7
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 6.1e-51 204.5 126 75.4
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 2.3e-50 202.6 107 89.7
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 4.0e-50 201.8 107 87.9
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 6.8e-50 201.1 107 87.9
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 8.9e-50 200.7 107 85.0
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 5.7e-49 198.0 107 82.2
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 7.5e-49 197.6 107 83.2
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 7.5e-49 197.6 111 83.8
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 2.2e-48 196.1 126 71.4
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 3.7e-48 195.3 93 91.4
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 3.7e-48 195.3 107 85.0
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 4.9e-48 194.9 94 91.5
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 4.9e-48 194.9 119 79.0
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 1.8e-47 193.0 94 90.4
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 2.4e-47 192.6 140 69.3
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 5.4e-47 191.4 140 69.3
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 2.7e-46 189.1 107 84.1
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 1.5e-44 183.3 107 81.3
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 7.3e-44 181.0 139 66.2
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 7.5e-41 171.0 126 69.8
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 8.3e-40 167.5 124 66.1
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 1.4e-39 166.8 122 62.3
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 7.8e-38 161.0 141 58.2
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 1.5e-36 156.8 75 90.7
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 3.3e-36 155.6 102 64.7
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 7.3e-36 154.5 126 63.5
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 1.7e-32 143.3 104 62.5
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 8.3e-32 141.0 79 84.8
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 1.2e-30 137.1 75 88.0
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.1e-28 130.6 79 74.7
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 2.5e-28 129.4 126 55.6
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.1e-27 126.3 86 72.1
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.1e-26 124.0 86 70.9
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 3.4e-25 119.0 90 56.7
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 3.4e-25 119.0 67 80.6
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 5.8e-25 118.2 63 84.1
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 1.7e-24 116.7 66 78.8
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 3.7e-24 115.5 88 68.2
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 4.1e-23 112.1 75 69.3
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 8.6e-21 104.4 95 58.9
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 8.1e-19 97.8 72 69.4
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 3.1e-18 95.9 75 66.7
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 6.8e-18 94.7 79 55.7
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 1.9e-15 86.7 103 42.7
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 2.4e-15 86.3 43 90.7
QL12p012843 Quercus lobata HOM05D005100 ORTHO05D005607 5.8e-09 65.1 42 81.0
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 9.9e-09 64.3 45 71.1
SMO119G0354 Selaginella moellendorffii HOM05D005100 ORTHO05D005607 2.7e-06 56.2 105 32.4


User provided reference genes

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