Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 1.4e-226 789.3 405 100.0
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 1.7e-171 606.3 401 79.1
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 5.6e-170 601.3 397 79.8
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 1.8e-168 596.3 396 78.0
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 4.4e-167 591.7 410 76.8
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 7.5e-167 590.9 395 77.5
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 9.8e-167 590.5 396 77.5
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 3.2e-165 585.5 394 77.2
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 3.2e-165 585.5 382 79.1
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 7.0e-165 584.3 404 75.2
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 7.0e-165 584.3 406 76.6
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 2.7e-164 582.4 394 76.6
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 2.7e-164 582.4 352 83.0
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 3.5e-164 582.0 351 83.2
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 7.8e-164 580.9 345 83.8
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 1.6e-161 573.2 394 75.4
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 3.1e-160 568.9 352 83.5
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 4.0e-160 568.5 419 71.8
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 1.2e-159 567.0 354 80.8
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 1.3e-158 563.5 395 73.9
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 3.7e-158 562.0 296 89.5
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 6.4e-158 561.2 394 74.9
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 6.4e-158 561.2 413 71.9
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 8.3e-158 560.8 399 76.4
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 8.3e-158 560.8 496 65.3
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 2.4e-157 559.3 394 74.4
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 2.4e-157 559.3 397 76.1
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 1.6e-156 556.6 351 79.5
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 2.7e-156 555.8 346 79.8
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 6.0e-156 554.7 406 71.2
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 6.0e-156 554.7 351 79.2
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 7.8e-156 554.3 398 73.4
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 7.8e-156 554.3 398 73.4
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 1.0e-155 553.9 344 82.3
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 1.3e-155 553.5 405 72.3
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 2.3e-155 552.7 394 73.4
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.0e-155 552.4 397 75.3
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 3.0e-155 552.4 331 81.3
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 3.0e-155 552.4 407 71.5
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 5.0e-155 551.6 395 72.7
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 5.0e-155 551.6 356 76.7
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 3.3e-154 548.9 394 73.1
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 3.3e-154 548.9 398 73.4
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 4.3e-154 548.5 401 74.1
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 6.2e-153 544.7 299 86.0
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 8.1e-153 544.3 331 81.9
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 8.1e-153 544.3 407 69.0
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 1.1e-152 543.9 294 87.4
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 1.4e-152 543.5 294 87.1
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 1.8e-152 543.1 348 79.0
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 3.1e-152 542.3 400 69.5
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 4.0e-152 542.0 299 85.3
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 4.0e-152 542.0 299 86.0
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 6.8e-152 541.2 330 80.3
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 1.2e-151 540.4 327 82.6
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 1.5e-151 540.0 400 71.8
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 3.4e-151 538.9 404 68.6
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 1.3e-150 537.0 351 78.3
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 1.7e-150 536.6 289 87.5
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 2.9e-150 535.8 399 71.9
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 3.7e-150 535.4 341 77.4
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 6.4e-150 534.6 401 72.8
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 6.4e-150 534.6 401 73.3
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 8.3e-150 534.3 289 87.5
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 8.3e-150 534.3 396 74.0
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 8.3e-150 534.3 355 77.2
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 8.3e-150 534.3 400 68.5
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 1.1e-149 533.9 401 70.8
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 1.9e-149 533.1 335 79.7
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 1.9e-149 533.1 363 74.7
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 1.9e-149 533.1 289 87.2
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 4.1e-149 531.9 290 87.2
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 4.1e-149 531.9 290 87.2
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 4.1e-149 531.9 400 68.0
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 1.6e-148 530.0 409 70.7
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 1.6e-148 530.0 287 87.5
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 2.7e-148 529.3 403 71.5
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 6.0e-148 528.1 341 79.8
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 1.7e-147 526.6 350 76.3
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 3.0e-147 525.8 426 65.5
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 6.6e-147 524.6 348 75.6
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 6.6e-147 524.6 288 85.4
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 6.6e-147 524.6 316 81.0
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 8.6e-147 524.2 320 79.7
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.9e-146 523.1 389 67.6
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 3.3e-146 522.3 324 79.3
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 4.3e-146 521.9 322 79.5
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 4.3e-146 521.9 310 82.6
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 4.3e-146 521.9 312 79.8
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 9.5e-146 520.8 347 74.1
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 2.1e-145 519.6 398 69.3
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 4.7e-145 518.5 429 65.0
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 6.8e-144 514.6 294 84.0
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 1.2e-143 513.8 320 77.2
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 4.9e-142 508.4 402 66.9
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 6.4e-142 508.1 346 70.8
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 2.4e-141 506.1 342 74.9
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 4.1e-141 505.4 385 66.5
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 2.7e-140 502.7 366 67.2
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 1.3e-139 500.4 422 65.6
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 2.3e-139 499.6 409 66.7
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 1.9e-138 496.5 397 70.8
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 1.4e-136 490.3 301 76.7
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 3.1e-136 489.2 282 80.5
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 6.9e-136 488.0 317 73.8
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 7.6e-135 484.6 395 66.8
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 3.8e-134 482.3 265 86.8
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 1.0e-131 474.2 375 66.4
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 1.7e-131 473.4 281 79.7
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 3.0e-131 472.6 365 66.6
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 1.8e-128 463.4 325 69.2
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 8.4e-126 454.5 323 70.0
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 2.9e-118 429.5 358 58.1
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 2.7e-116 422.9 279 70.3
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 6.7e-115 418.3 219 91.3
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 8.2e-113 411.4 272 69.5
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 4.0e-112 409.1 307 67.1
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 6.9e-112 408.3 337 70.0
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 1.5e-111 407.1 274 68.2
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 7.6e-111 404.8 397 60.2
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 1.4e-109 400.6 340 59.4
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 9.4e-101 371.3 403 55.3
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 3.1e-96 356.3 183 89.6
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 3.2e-93 346.3 396 53.0
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 8.0e-76 288.5 155 85.2
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 1.2e-71 274.6 147 85.7
Dinv37766 Davidia involucrata HOM05D005292 ORTHO05D006473 5.7e-66 255.8 268 60.1
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 2.2e-49 200.7 173 63.0
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 1.0e-46 191.8 238 46.6
MELO3C005579.2 Cucumis melo HOM05D005292 ORTHO05D006473 1.6e-44 184.5 210 55.2
Lsat_1_v5_gn_2_99060 Lactuca sativa HOM05D005292 ORTHO05D006473 5.8e-42 176.0 120 75.8
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.9e-37 161.0 94 72.3
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 9.5e-37 158.7 161 55.3
TAR636G3691 Trochodendron aralioides HOM05D005292 ORTHO05D006473 5.8e-34 149.4 131 64.1
SEGI_08273 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.6e-31 141.4 84 82.1
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 1.7e-30 137.9 66 92.4
Glyma.05G052200 Glycine max HOM05D005292 ORTHO05D006473 1.2e-28 131.7 137 53.3
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 6.2e-28 129.4 66 84.8
MD06G1074800 Malus domestica HOM05D005292 ORTHO05D006473 2.0e-26 124.4 72 86.1
SEGI_15988 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 7.1e-24 115.9 66 81.8
TWI81G0363 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 5.1e-22 109.8 71 77.5
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 9.3e-16 89.0 48 81.2
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 2.7e-15 87.4 66 62.1
Peaxi162Scf00102g01237 Petunia axillaris HOM05D000023 ORTHO05D013611 2.1e-07 61.2 46 60.9


User provided reference genes

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