Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 2.0e-68 262.3 134 100.0
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 2.3e-40 169.1 107 82.2
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.0e-32 143.7 106 76.4
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 5.8e-31 137.9 109 73.4
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 6.4e-30 134.4 106 74.5
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 7.0e-29 131.0 109 73.4
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 3.5e-28 128.6 113 64.6
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 1.0e-27 127.1 109 67.9
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 1.5e-26 123.2 105 66.7
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.3e-26 122.1 108 63.9
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 4.3e-26 121.7 104 64.4
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.3e-26 121.7 108 63.0
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 7.3e-26 120.9 109 64.2
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 1.6e-25 119.8 104 65.4
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.8e-25 119.0 108 62.0
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.7e-25 118.2 110 64.5
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.1e-24 117.1 110 64.5
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 2.3e-24 115.9 94 66.0
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 2.3e-24 115.9 102 60.8
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 4.0e-24 115.2 108 63.0
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.2e-23 113.6 101 61.4
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 2.6e-23 112.5 105 62.9
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.6e-23 112.5 110 62.7
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 9.8e-23 110.5 107 56.1
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 8.3e-22 107.5 100 63.0
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.4e-21 106.7 108 60.2
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 4.1e-21 105.1 113 54.0
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 5.4e-21 104.8 94 56.4
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 7.1e-21 104.4 107 57.9
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.6e-20 103.2 94 55.3
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 2.7e-20 102.4 85 69.4
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 4.6e-20 101.7 95 55.8
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 1.7e-19 99.8 95 55.8
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 3.0e-19 99.0 105 57.1
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 5.1e-19 98.2 88 64.8
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 6.6e-19 97.8 101 59.4
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 1.9e-18 96.3 93 63.4
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.9e-18 96.3 114 55.3
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.9e-18 96.3 97 57.7
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 3.3e-18 95.5 94 54.3
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 9.5e-18 94.0 97 56.7
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 1.6e-17 93.2 91 61.5
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 8.1e-17 90.9 112 50.9
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 1.1e-16 90.5 68 66.2
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 1.8e-16 89.7 91 54.9
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.3e-16 89.4 93 57.0
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 3.1e-16 89.0 104 52.9
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 3.1e-16 89.0 102 52.9
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 1.2e-15 87.0 102 52.9
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 2.6e-15 85.9 93 57.0
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 3.4e-15 85.5 85 54.1
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 4.4e-15 85.1 94 54.3
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 5.8e-15 84.7 109 48.6
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 2.2e-14 82.8 103 52.4
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 2.2e-14 82.8 87 62.1
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 2.9e-14 82.4 92 56.5
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 2.9e-14 82.4 103 51.5
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 4.9e-14 81.6 103 51.5
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 6.4e-14 81.3 97 50.5
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 2.4e-13 79.3 62 72.6
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 5.4e-13 78.2 95 49.5
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 2.1e-12 76.3 79 57.0
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 7.8e-12 74.3 80 58.8
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 1.0e-11 73.9 80 58.8
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 1.0e-11 73.9 96 49.0
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 2.3e-11 72.8 92 54.3
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 5.1e-11 71.6 93 49.5
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 5.1e-11 71.6 94 48.9
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 6.6e-11 71.2 83 56.6
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 6.6e-11 71.2 94 48.9
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 6.6e-11 71.2 94 48.9
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 6.6e-11 71.2 94 48.9
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 6.6e-11 71.2 87 54.0
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 8.6e-11 70.9 94 52.1
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 1.9e-10 69.7 87 47.1
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 1.9e-10 69.7 83 54.2
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 2.5e-10 69.3 83 50.6
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 2.5e-10 69.3 104 44.2
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 3.3e-10 68.9 98 46.9
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 7.3e-10 67.8 94 47.9
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 7.3e-10 67.8 104 45.2
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 7.3e-10 67.8 97 46.4
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 9.6e-10 67.4 89 50.6
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.2e-09 67.0 109 45.0
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 2.1e-09 66.2 89 47.2
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 2.8e-09 65.9 99 47.5
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 2.8e-09 65.9 92 48.9
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 2.8e-09 65.9 67 56.7
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 3.6e-09 65.5 72 47.2
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 4.7e-09 65.1 85 48.2
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 4.7e-09 65.1 89 47.2
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 8.1e-09 64.3 85 50.6
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 1.1e-08 63.9 99 42.4
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.4e-08 63.5 86 50.0
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 1.4e-08 63.5 45 66.7
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.4e-08 63.5 72 47.2
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.4e-08 63.5 70 54.3
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 2.4e-08 62.8 94 45.7
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 2.4e-08 62.8 89 46.1
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 2.4e-08 62.8 89 46.1
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 2.4e-08 62.8 72 58.3
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 3.1e-08 62.4 84 47.6
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.1e-08 62.4 93 43.0
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 4.0e-08 62.0 96 41.7
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 4.0e-08 62.0 90 47.8
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 4.0e-08 62.0 50 60.0
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 4.0e-08 62.0 45 71.1
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 5.2e-08 61.6 88 42.0
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 5.2e-08 61.6 88 42.0
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 6.8e-08 61.2 89 48.3
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 6.8e-08 61.2 88 43.2
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 6.8e-08 61.2 61 52.5
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 6.8e-08 61.2 61 52.5
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 6.8e-08 61.2 89 47.2
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 6.8e-08 61.2 99 43.4
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 6.8e-08 61.2 44 65.9
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 6.8e-08 61.2 93 41.9
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 6.8e-08 61.2 49 59.2
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 6.8e-08 61.2 100 46.0
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 6.8e-08 61.2 90 46.7
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 8.9e-08 60.8 89 48.3
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 8.9e-08 60.8 93 41.9
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 8.9e-08 60.8 88 44.3
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 8.9e-08 60.8 93 41.9
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 8.9e-08 60.8 95 43.2
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.2e-07 60.5 80 51.2
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 1.2e-07 60.5 89 48.3
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.5e-07 60.1 92 45.7
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 1.5e-07 60.1 106 37.7
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 1.5e-07 60.1 93 41.9
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 1.5e-07 60.1 104 41.3
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 1.5e-07 60.1 99 39.4
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 1.5e-07 60.1 54 53.7
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 1.5e-07 60.1 80 46.2
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 2.0e-07 59.7 61 50.8
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 2.0e-07 59.7 95 37.9
C04p31700 Brassica napus HOM05D003683 ORTHO05D004143 2.6e-07 59.3 101 40.6
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 2.6e-07 59.3 84 48.8
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 2.6e-07 59.3 88 44.3
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 3.4e-07 58.9 91 40.7
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 3.4e-07 58.9 102 46.1
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 4.4e-07 58.5 76 44.7
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 4.4e-07 58.5 94 40.4
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 7.6e-07 57.8 89 46.1
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 7.6e-07 57.8 89 40.4
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 7.6e-07 57.8 89 40.4
DCAR_008565 Daucus carota HOM05D003683 ORTHO05D004143 7.6e-07 57.8 60 60.0
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 7.6e-07 57.8 56 55.4
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 7.6e-07 57.8 94 43.6
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 9.9e-07 57.4 88 43.2
Manes.05G044050 Manihot esculenta HOM05D003683 ORTHO05D004143 9.9e-07 57.4 46 63.0
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 1.3e-06 57.0 53 50.9
AL5G43210 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 2.2e-06 56.2 77 45.5
Cc02_g36550 Coffea canephora HOM05D003683 ORTHO05D004143 2.2e-06 56.2 81 46.9
Os09g0520500 Oryza sativa ssp. japonica HOM05D003683 ORTHO05D004143 2.2e-06 56.2 46 58.7
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 3.8e-06 55.5 43 67.4
A07p25250 Brassica napus HOM05D003683 ORTHO05D004143 4.9e-06 55.1 89 41.6
BraA07t30167Z Brassica rapa HOM05D003683 ORTHO05D004143 4.9e-06 55.1 89 40.4
BolC4t24719H Brassica oleracea HOM05D003683 ORTHO05D004143 6.4e-06 54.7 40 67.5
BraA04t15855Z Brassica rapa HOM05D003683 ORTHO05D004143 6.4e-06 54.7 40 67.5
PGR031G2056 Punica granatum HOM05D003683 ORTHO05D004143 6.4e-06 54.7 50 56.0
Solyc01g091490.3 Solanum lycopersicum HOM05D003683 ORTHO05D004143 6.4e-06 54.7 78 46.2
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 6.4e-06 54.7 97 40.2


User provided reference genes

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