Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G031801 Manihot esculenta HOM05D005851 ORTHO05D007137 1.7e-94 349.4 176 100.0
Sabra01G0087800 Salix brachista HOM05D005851 ORTHO05D007137 1.8e-53 213.0 171 68.4
Potri.001G114800 Populus trichocarpa HOM05D005851 ORTHO05D007137 3.0e-51 205.7 168 65.5
FAN04G1422 Fragaria x ananassa HOM05D005851 ORTHO05D007137 3.9e-43 178.7 146 65.8
Duzib205G1229 Durio zibethinus HOM05D005851 ORTHO05D007137 8.6e-43 177.6 181 58.6
FvH4_5g00940 Fragaria vesca HOM05D005851 ORTHO05D007137 8.6e-43 177.6 146 65.1
FAN13G0774 Fragaria x ananassa HOM05D005851 ORTHO05D007137 8.6e-43 177.6 146 65.1
TAR629G1703 Trochodendron aralioides HOM05D005851 ORTHO05D007137 1.1e-42 177.2 184 54.9
QL12p015621 Quercus lobata HOM05D005851 ORTHO05D007137 1.9e-42 176.4 185 55.7
TWI60G0484 Tripterygium wilfordii HOM05D005851 ORTHO05D007137 4.3e-42 175.3 116 75.9
RcHm_v2.0_Chr7g0200451 Rosa chinensis HOM05D005851 ORTHO05D007137 7.3e-42 174.5 147 66.0
Cpa.g.sc29.62 Carica papaya HOM05D005851 ORTHO05D007137 9.5e-42 174.1 115 76.5
Gohir.D12G225000 Gossypium hirsutum HOM05D005851 ORTHO05D007137 1.2e-41 173.7 118 75.4
Gorai.008G241100 Gossypium raimondii HOM05D005851 ORTHO05D007137 1.2e-41 173.7 181 60.2
Gohir.A12G222500 Gossypium hirsutum HOM05D005851 ORTHO05D007137 4.7e-41 171.8 177 58.2
Hma1.2p1_0367F.1_g137205 Hydrangea macrophylla HOM05D005851 ORTHO05D007137 4.7e-41 171.8 183 54.1
GSVIVG01019923001 Vitis vinifera HOM05D005851 ORTHO05D007137 1.4e-40 170.2 119 72.3
Actinidia14484 Actinidia chinensis HOM05D005851 ORTHO05D007137 1.8e-40 169.9 119 71.4
Sc01g0009080 Simmondsia chinensis HOM05D005851 ORTHO05D007137 4.0e-40 168.7 134 64.2
Oeu064711.1 Olea europaea HOM05D005851 ORTHO05D007137 1.2e-39 167.2 164 60.4
PGR042G2385 Punica granatum HOM05D005851 ORTHO05D007137 2.6e-39 166.0 116 69.0
Ciclev10024430m.g Citrus clementina HOM05D005851 ORTHO05D007137 5.8e-39 164.9 161 58.4
vmacro00216 Vaccinium macrocarpon HOM05D005851 ORTHO05D007137 5.8e-39 164.9 120 70.0
MD06G1068000 Malus domestica HOM05D005851 ORTHO05D007137 9.9e-39 164.1 141 60.3
ECA233G5981 Erigeron canadensis HOM05D005851 ORTHO05D007137 6.4e-38 161.4 120 70.8
Atru.chr9.1473 Acer truncatum HOM05D005851 ORTHO05D007137 8.3e-38 161.0 173 56.6
Sed0022049 Sechium edule HOM05D005851 ORTHO05D007137 8.3e-38 161.0 154 59.7
Peaxi162Scf00620g00019 Petunia axillaris HOM05D005851 ORTHO05D007137 2.4e-37 159.5 183 53.6
DCAR_000876 Daucus carota HOM05D005851 ORTHO05D007137 4.1e-37 158.7 101 78.2
Rhsim05G0172500 Rhododendron simsii HOM05D005851 ORTHO05D007137 5.4e-37 158.3 135 63.0
Sopen08g028040 Solanum pennellii HOM05D005851 ORTHO05D007137 5.4e-37 158.3 122 65.6
Solyc08g079680.3 Solanum lycopersicum HOM05D005851 ORTHO05D007137 7.1e-37 157.9 122 65.6
Nitab4.5_0006122g0020 Nicotiana tabacum HOM05D005851 ORTHO05D007137 9.2e-37 157.5 160 55.6
BolC1t01669H Brassica oleracea HOM05D005851 ORTHO05D007137 1.2e-36 157.1 164 54.9
CsaV3_3G003320 Cucumis sativus L. HOM05D005851 ORTHO05D007137 1.2e-36 157.1 143 62.9
Migut.E01010 Erythranthe guttata HOM05D005851 ORTHO05D007137 1.6e-36 156.8 160 55.0
MBI12_g34479_MAGBIO Magnolia biondii HOM05D005851 ORTHO05D007137 1.6e-36 156.8 142 62.0
AUR62010535 Chenopodium quinoa HOM05D005851 ORTHO05D007137 2.1e-36 156.4 166 55.4
HanXRQChr09g0246661 Helianthus annuus HOM05D005851 ORTHO05D007137 2.1e-36 156.4 167 55.1
Medtr5g011460 Medicago truncatula HOM05D005851 ORTHO05D007137 2.7e-36 156.0 130 60.8
PGSC0003DMG400003949 Solanum tuberosum HOM05D005851 ORTHO05D007137 2.7e-36 156.0 122 64.8
BcaC09g51070 Brassica carinata HOM05D005851 ORTHO05D007137 3.5e-36 155.6 164 54.3
BcaC09g51071 Brassica carinata HOM05D005851 ORTHO05D007137 3.5e-36 155.6 164 54.3
C01p17300 Brassica napus HOM05D005851 ORTHO05D007137 3.5e-36 155.6 164 54.3
Nitab4.5_0000439g0090 Nicotiana tabacum HOM05D005851 ORTHO05D007137 3.5e-36 155.6 138 58.0
CSS0019536 Camellia sinensis var. sinensis HOM05D005851 ORTHO05D007137 4.6e-36 155.2 122 68.0
AUR62017360 Chenopodium quinoa HOM05D005851 ORTHO05D007137 4.6e-36 155.2 166 53.6
EL10Ac5g12653 Beta vulgaris HOM05D005851 ORTHO05D007137 7.8e-36 154.5 110 71.8
SalBow1G3546 Salvia bowleyana HOM05D005851 ORTHO05D007137 7.8e-36 154.5 139 59.0
Psat2g180400 Pisum sativum HOM05D005851 ORTHO05D007137 1.7e-35 153.3 138 58.0
SGA_v2.0_scaffold144G35989 Striga asiatica HOM05D005851 ORTHO05D007137 1.7e-35 153.3 141 57.4
A01p14080 Brassica napus HOM05D005851 ORTHO05D007137 3.0e-35 152.5 164 54.3
BraA01t01356Z Brassica rapa HOM05D005851 ORTHO05D007137 3.0e-35 152.5 164 54.3
AL7G30690 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 3.9e-35 152.1 121 65.3
Cc08_g13500 Coffea canephora HOM05D005851 ORTHO05D007137 3.9e-35 152.1 116 66.4
TPR.G19565 Trifolium pratense HOM05D005851 ORTHO05D007137 3.9e-35 152.1 123 62.6
Nitab4.5_0001816g0070 Nicotiana tabacum HOM05D005851 ORTHO05D007137 5.1e-35 151.8 119 65.5
Carub.0007s1844 Capsella rubella HOM05D005851 ORTHO05D007137 8.6e-35 151.0 120 65.0
THA.LOC104814025 Tarenaya hassleriana HOM05D005851 ORTHO05D007137 8.6e-35 151.0 182 48.9
CARHR229860 Cardamine hirsuta HOM05D005851 ORTHO05D007137 1.1e-34 150.6 171 52.6
MELO3C013999.2 Cucumis melo HOM05D005851 ORTHO05D007137 1.9e-34 149.8 151 59.6
Lj2g0003035 Lotus japonicus HOM05D005851 ORTHO05D007137 1.9e-34 149.8 111 68.5
arahy.Tifrunner.gnm1.ann1.KEJN3W Arachis hypogaea HOM05D005851 ORTHO05D007137 2.5e-34 149.4 112 67.0
FAN08G3582 Fragaria x ananassa HOM05D005851 ORTHO05D007137 2.5e-34 149.4 148 57.4
Thhalv10026321m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 3.3e-34 149.1 121 64.5
Phvul.002G151800 Phaseolus vulgaris HOM05D005851 ORTHO05D007137 4.3e-34 148.7 114 66.7
HPP92_025677 Vanilla planifolia HOM05D005851 ORTHO05D007137 4.3e-34 148.7 139 56.1
arahy.Tifrunner.gnm1.ann1.BUTP6K Arachis hypogaea HOM05D005851 ORTHO05D007137 5.6e-34 148.3 125 60.0
BcaNung01022 Brassica carinata HOM05D005851 ORTHO05D007137 5.6e-34 148.3 121 62.8
CDE04G1030 Ceratophyllum demersum HOM05D005851 ORTHO05D007137 5.6e-34 148.3 172 51.7
CAN.G630.46 Capsicum annuum HOM05D005851 ORTHO05D007137 9.5e-34 147.5 113 67.3
Aa31LG6G4910 Aethionema arabicum HOM05D000943 ORTHO05D002475 1.2e-33 147.1 183 47.5
AT4G22830 Arabidopsis thaliana HOM05D005851 ORTHO05D007137 1.2e-33 147.1 121 62.0
Glyma.01G213300 Glycine max HOM05D005851 ORTHO05D007137 1.2e-33 147.1 145 57.9
PGSC0003DMG400012515 Solanum tuberosum HOM05D005851 ORTHO05D007137 1.2e-33 147.1 146 54.8
Glyma.11G028600 Glycine max HOM05D005851 ORTHO05D007137 1.6e-33 146.7 127 63.0
Nitab4.5_0001265g0130 Nicotiana tabacum HOM05D005851 ORTHO05D007137 1.6e-33 146.7 102 71.6
SEGI_29987 Sequoiadendron giganteum HOM05D005851 ORTHO05D007137 1.6e-33 146.7 82 82.9
Solyc08g007580.4 Solanum lycopersicum HOM05D005851 ORTHO05D007137 1.6e-33 146.7 137 58.4
Zm00001eb103020 Zea mays HOM05D005851 ORTHO05D007137 3.6e-33 145.6 92 72.8
CiPaw.11G145200 Carya illinoinensis HOM05D005851 ORTHO05D007137 4.7e-33 145.2 174 48.9
Os04g0379400 Oryza sativa ssp. japonica HOM05D005851 ORTHO05D007137 6.2e-33 144.8 118 60.2
Sopen08g003540 Solanum pennellii HOM05D005851 ORTHO05D007137 1.4e-32 143.7 108 65.7
MSTRG.1924 Avicennia marina HOM05D005851 ORTHO05D007137 4.0e-32 142.1 175 48.6
VMungo1215G2211 Vigna mungo HOM05D005851 ORTHO05D007137 4.0e-32 142.1 97 75.3
CAN.G1394.24 Capsicum annuum HOM05D005851 ORTHO05D007137 6.8e-32 141.4 127 57.5
ATR0810G218 Amborella trichopoda HOM05D005851 ORTHO05D007137 8.9e-32 141.0 112 61.6
Ah.02g116130 Amaranthus hybridus HOM05D005851 ORTHO05D007137 1.2e-31 140.6 92 71.7
Pp3c10_11850 Physcomitrium patens HOM05D005851 ORTHO05D007137 6.4e-30 134.8 88 69.3
Lalb_Chr16g0379871 Lupinus albus HOM05D005851 ORTHO05D007137 7.1e-29 131.3 149 52.3
Pp3c12_9510 Physcomitrium patens HOM05D005851 ORTHO05D007137 1.2e-28 130.6 161 47.2
SMO364G0744 Selaginella moellendorffii HOM05D005851 ORTHO05D007137 1.2e-28 130.6 110 59.1
Mapoly0066s0013 Marchantia polymorpha HOM05D005851 ORTHO05D007137 6.0e-28 128.3 88 64.8
Thecc.03G264400 Theobroma cacao HOM05D005851 ORTHO05D007137 1.0e-27 127.5 151 57.0
FAN18G0436 Fragaria x ananassa HOM05D005851 ORTHO05D007137 3.9e-27 125.6 107 65.4
Nn1g01189 Nelumbo nucifera HOM05D005851 ORTHO05D007137 6.6e-27 124.8 84 72.6
CANSAT95G0001 Cannabis sativa HOM05D005851 ORTHO05D007137 9.6e-26 120.9 164 48.8
Cre12.g555400 Chlamydomonas reinhardtii HOM05D005851 ORTHO05D007137 1.1e-24 117.5 115 51.3
Hund14676 Selenicereus undatus HOM05D005851 ORTHO05D007137 4.0e-24 115.5 126 54.8
COL.COLO4_23838 Corchorus olitorius HOM05D005851 ORTHO05D007137 2.4e-21 106.3 63 76.2
ClCG00G000050 Citrullus lanatus HOM05D005851 ORTHO05D007137 4.2e-21 105.5 122 53.3
ClCG00G005270 Citrullus lanatus HOM05D005851 ORTHO05D007137 4.2e-21 105.5 122 53.3
ClCG10G003300 Citrullus lanatus HOM05D005851 ORTHO05D007137 4.2e-21 105.5 122 53.3
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 5.4e-21 105.1 88 52.3
ClCG00G004660 Citrullus lanatus HOM05D005851 ORTHO05D007137 2.1e-20 103.2 135 50.4
Eucgr.E00492 Eucalyptus grandis HOM05D005851 ORTHO05D007137 2.1e-20 103.2 110 55.5
Lsat_1_v5_gn_6_10241 Lactuca sativa HOM05D005851 ORTHO05D007137 2.1e-20 103.2 84 67.9
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 4.6e-20 102.1 122 45.9
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 7.8e-20 101.3 94 53.2
Lj2A204T50 Lonicera japonica HOM05D005851 ORTHO05D007137 1.0e-19 100.9 46 93.5
unitig_699.g19746 Utricularia gibba HOM05D002021 ORTHO05D002077 1.7e-19 100.1 77 67.5
Ca_06681_v3 Cicer arietinum L. HOM05D000943 ORTHO05D002475 1.5e-18 97.1 63 74.6
PSO782G0540 Papaver somniferum HOM05D005851 ORTHO05D007137 3.3e-18 95.9 88 61.4
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 5.6e-18 95.1 109 44.0
MCO14G294 Micromonas commoda HOM05D005851 ORTHO05D007137 1.3e-17 94.0 79 50.6
COL.COLO4_23837 Corchorus olitorius HOM05D005851 ORTHO05D007137 1.6e-12 77.0 89 56.2
BolC3t15330H Brassica oleracea HOM05D005851 ORTHO05D007137 3.3e-10 69.3 41 78.0
Lj2C204G6 Lonicera japonica HOM05D005851 ORTHO05D007137 3.7e-09 65.9 97 49.5
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 2.4e-08 63.2 97 40.2
Cfa020517 Carpinus fangiana HOM05D005851 ORTHO05D007137 4.0e-08 62.4 111 43.2
Aqoxy5G03942 Aquilegia oxysepala HOM05D001344 ORTHO05D002590 2.6e-07 59.7 69 50.7
MD04G1076900 Malus domestica HOM05D005851 ORTHO05D007137 2.6e-07 59.7 42 64.3
Dinv39057 Davidia involucrata HOM05D005851 ORTHO05D007137 5.8e-07 58.5 41 63.4
Dinv39056 Davidia involucrata HOM05D005851 ORTHO05D007137 7.6e-07 58.2 136 39.0
BcaC09g48268 Brassica carinata HOM05D002423 ORTHO05D007137 9.9e-07 57.8 69 53.6
C01p52310 Brassica napus HOM05D002423 ORTHO05D007137 9.9e-07 57.8 69 53.6
Nn4g26436 Nelumbo nucifera HOM05D005851 ORTHO05D007137 2.9e-06 56.2 40 60.0
arahy.Tifrunner.gnm1.ann1.UAJL6I Arachis hypogaea HOM05D005851 ORTHO05D007137 6.4e-06 55.1 63 52.4
Haze_09033 Corylus avellana HOM05D000491 ORTHO05D000359 8.4e-06 54.7 93 41.9


User provided reference genes

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