Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G026900 Manihot esculenta HOM05D006075 ORTHO05D007527 1.6e-269 932.2 469 100.0
Manes.01G066100 Manihot esculenta HOM05D006075 ORTHO05D007527 6.7e-167 591.3 522 64.4
Potri.001G109200 Populus trichocarpa HOM05D006075 ORTHO05D007527 4.3e-150 535.4 514 59.7
TWI81G0173 Tripterygium wilfordii HOM05D006075 ORTHO05D007527 2.2e-149 533.1 511 59.3
Prupe.5G091900 Prunus persica HOM05D006075 ORTHO05D007527 4.1e-148 528.9 526 58.2
QL12p017421 Quercus lobata HOM05D006075 ORTHO05D007527 4.5e-147 525.4 519 57.8
CiPaw.11G140500 Carya illinoinensis HOM05D006075 ORTHO05D007527 6.5e-146 521.5 526 58.4
Atru.chr9.1549 Acer truncatum HOM05D006075 ORTHO05D007527 1.4e-145 520.4 515 58.1
Sabra01G0082500 Salix brachista HOM05D006075 ORTHO05D007527 1.9e-145 520.0 549 56.3
Ciclev10019953m.g Citrus clementina HOM05D006075 ORTHO05D007527 2.5e-145 519.6 525 56.4
Eucgr.E00536 Eucalyptus grandis HOM05D006075 ORTHO05D007527 4.6e-144 515.4 511 57.1
Dinv37681 Davidia involucrata HOM05D006075 ORTHO05D007527 2.3e-143 513.1 511 57.5
Medtr4g102820 Medicago truncatula HOM05D006075 ORTHO05D007527 3.0e-143 512.7 527 55.0
RcHm_v2.0_Chr7g0199111 Rosa chinensis HOM05D006075 ORTHO05D007527 1.5e-142 510.4 521 57.4
GSVIVG01019817001 Vitis vinifera HOM05D006075 ORTHO05D007527 2.5e-142 509.6 499 57.5
MD06G1073700 Malus domestica HOM05D006075 ORTHO05D007527 4.3e-142 508.8 523 56.8
TPR.G19222 Trifolium pratense HOM05D006075 ORTHO05D007527 9.7e-142 507.7 517 55.7
Glyma.17G131000 Glycine max HOM05D006075 ORTHO05D007527 3.7e-141 505.8 514 57.4
Rhsim07G0094000 Rhododendron simsii HOM05D006075 ORTHO05D007527 1.1e-140 504.2 524 55.3
Phvul.003G211900 Phaseolus vulgaris HOM05D006075 ORTHO05D007527 1.4e-140 503.8 517 56.5
Lj4g0025720 Lotus japonicus HOM05D006075 ORTHO05D007527 3.1e-140 502.7 516 54.7
CANSAT21G0515 Cannabis sativa HOM05D006075 ORTHO05D007527 4.1e-140 502.3 514 55.8
FAN18G0544 Fragaria x ananassa HOM05D006075 ORTHO05D007527 6.9e-140 501.5 521 56.0
FAN08G0877 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.2e-139 500.7 521 56.0
Thecc.02G127300 Theobroma cacao HOM05D006075 ORTHO05D007527 1.2e-139 500.7 511 56.9
TPR.G23260 Trifolium pratense HOM05D006075 ORTHO05D007527 2.0e-139 500.0 508 56.5
Nn6g34229 Nelumbo nucifera HOM05D006075 ORTHO05D007527 3.4e-139 499.2 507 55.4
FAN04G1557 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.0e-138 497.7 521 55.5
Psat1g082240 Pisum sativum HOM05D006075 ORTHO05D007527 1.7e-138 496.9 525 53.7
Gorai.002G011900 Gossypium raimondii HOM05D006075 ORTHO05D007527 2.2e-138 496.5 507 56.8
Gohir.A01G010200 Gossypium hirsutum HOM05D006075 ORTHO05D007527 5.0e-138 495.4 507 56.6
Gohir.D01G009800 Gossypium hirsutum HOM05D006075 ORTHO05D007527 2.5e-137 493.0 507 56.4
Psat4g067760 Pisum sativum HOM05D006075 ORTHO05D007527 2.5e-137 493.0 525 53.7
CAN.G981.23 Capsicum annuum HOM05D006075 ORTHO05D007527 5.5e-137 491.9 498 57.4
Cc08_g14070 Coffea canephora HOM05D006075 ORTHO05D007527 1.6e-136 490.3 494 57.1
CSS0042428 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 2.3e-135 486.5 479 56.6
MELO3C005634.2 Cucumis melo HOM05D006075 ORTHO05D007527 3.0e-135 486.1 515 54.0
CsaV3_5G003210 Cucumis sativus L. HOM05D006075 ORTHO05D007527 3.9e-135 485.7 515 54.0
Sed0007766 Sechium edule HOM05D006075 ORTHO05D007527 3.9e-135 485.7 504 55.2
Sopen08g028750 Solanum pennellii HOM05D006075 ORTHO05D007527 5.1e-135 485.3 506 56.9
Oeu011664.1 Olea europaea HOM05D006075 ORTHO05D007527 2.6e-134 483.0 511 53.8
Solyc08g080420.4 Solanum lycopersicum HOM05D006075 ORTHO05D007527 9.7e-134 481.1 506 55.9
PSO478G2556 Papaver somniferum HOM05D006075 ORTHO05D007527 8.2e-133 478.0 508 53.7
Lalb_Chr16g0389751 Lupinus albus HOM05D006075 ORTHO05D007527 1.4e-132 477.2 506 54.9
MSTRG.13821 Avicennia marina HOM05D006075 ORTHO05D007527 4.1e-132 475.7 510 53.7
Lj2A193G48 Lonicera japonica HOM05D006075 ORTHO05D007527 4.1e-132 475.7 481 57.4
Migut.E01290 Erythranthe guttata HOM05D006075 ORTHO05D007527 1.5e-131 473.8 505 54.1
PSO782G2103 Papaver somniferum HOM05D006075 ORTHO05D007527 3.5e-131 472.6 508 53.3
AL2G12410 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 1.3e-130 470.7 514 54.3
Carub.0002s0185 Capsella rubella HOM05D006075 ORTHO05D007527 1.7e-130 470.3 512 53.9
Lalb_Chr09g0333281 Lupinus albus HOM05D006075 ORTHO05D007527 2.2e-130 469.9 507 53.1
arahy.Tifrunner.gnm1.ann1.M2EVQD Arachis hypogaea HOM05D006075 ORTHO05D007527 3.8e-130 469.2 517 52.8
Thhalv10023435m.g Eutrema salsugineum HOM05D006075 ORTHO05D007527 1.9e-129 466.8 506 53.6
A09p15680 Brassica napus HOM05D006075 ORTHO05D007527 2.5e-129 466.5 523 53.3
BraA09t37209Z Brassica rapa HOM05D006075 ORTHO05D007527 2.5e-129 466.5 523 53.3
Sp2g01480 Schrenkiella parvula HOM05D006075 ORTHO05D007527 3.2e-129 466.1 502 54.2
MD04G1066500 Malus domestica HOM05D006075 ORTHO05D007527 5.5e-129 465.3 490 56.3
BcaC04g22472 Brassica carinata HOM05D006075 ORTHO05D007527 7.2e-129 464.9 502 53.8
THA.LOC104818186 Tarenaya hassleriana HOM05D006075 ORTHO05D007527 9.4e-129 464.5 514 53.3
BcaB07g31383 Brassica carinata HOM05D006075 ORTHO05D007527 1.2e-128 464.2 502 53.8
AT1G63110 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 1.6e-128 463.8 519 53.0
C09p18910 Brassica napus HOM05D006075 ORTHO05D007527 2.1e-128 463.4 503 53.9
Aa31LG2G590 Aethionema arabicum HOM05D006075 ORTHO05D007527 3.7e-125 452.6 518 52.5
VMungo1215G1399 Vigna mungo HOM05D006075 ORTHO05D007527 3.7e-125 452.6 481 55.5
ECA240G3011 Erigeron canadensis HOM05D006075 ORTHO05D007527 1.2e-123 447.6 498 52.6
CDE11G0531 Ceratophyllum demersum HOM05D006075 ORTHO05D007527 4.5e-123 445.7 469 53.3
Peaxi162Scf00714g00528 Petunia axillaris HOM05D006075 ORTHO05D007527 1.7e-122 443.7 553 48.8
PGR042G3166 Punica granatum HOM05D006075 ORTHO05D007527 3.8e-122 442.6 505 52.9
HanXRQChr03g0085661 Helianthus annuus HOM05D006075 ORTHO05D007527 6.5e-122 441.8 494 54.0
HPP92_001310 Vanilla planifolia HOM05D006075 ORTHO05D007527 2.5e-121 439.9 486 51.4
BolC9t54793H Brassica oleracea HOM05D006075 ORTHO05D007527 4.2e-121 439.1 506 52.6
arahy.Tifrunner.gnm1.ann1.S8HR28 Arachis hypogaea HOM05D006075 ORTHO05D007527 1.0e-119 434.5 517 51.3
SGA_v2.0_scaffold385G50455 Striga asiatica HOM05D006075 ORTHO05D007527 3.4e-118 429.5 491 51.7
Os02g0688900 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 7.5e-118 428.3 496 50.8
EL10Ac5g12736 Beta vulgaris HOM05D006075 ORTHO05D007527 1.4e-116 424.1 519 48.7
FvH4_5g01570 Fragaria vesca HOM05D006075 ORTHO05D007527 7.0e-116 421.8 470 53.4
AT1G12730 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 7.7e-115 418.3 495 49.7
Actinidia05225 Actinidia chinensis HOM05D006075 ORTHO05D007527 2.9e-114 416.4 514 49.2
FAN13G2280 Fragaria x ananassa HOM05D006075 ORTHO05D007527 2.5e-113 413.3 433 56.1
SalBow1G6580 Salvia bowleyana HOM05D006075 ORTHO05D007527 7.2e-113 411.8 610 43.1
ClCG01G003090 Citrullus lanatus HOM05D006075 ORTHO05D007527 4.5e-107 392.5 501 48.3
Lsat_1_v5_gn_6_87521 Lactuca sativa HOM05D006075 ORTHO05D007527 4.5e-107 392.5 470 50.9
Carub.0001s1243 Capsella rubella HOM05D006075 ORTHO05D007527 2.3e-106 390.2 511 46.2
vmacro13924 Vaccinium macrocarpon HOM05D006075 ORTHO05D007527 1.2e-104 384.4 474 48.9
TAR629G3145 Trochodendron aralioides HOM05D006075 ORTHO05D007527 1.6e-104 384.0 422 52.4
TAR629G0535 Trochodendron aralioides HOM05D006075 ORTHO05D007527 8.0e-104 381.7 388 55.9
SEGI_27555 Sequoiadendron giganteum HOM05D006075 ORTHO05D007527 3.7e-101 372.9 508 43.3
PGSC0003DMG400003033 Solanum tuberosum HOM05D006075 ORTHO05D007527 3.5e-99 366.3 434 51.2
FAN08G0114 Fragaria x ananassa HOM05D006075 ORTHO05D007527 7.8e-99 365.2 457 49.7
HanXRQChr11g0323321 Helianthus annuus HOM05D006075 ORTHO05D007527 4.3e-97 359.4 478 49.8
AL1G24320 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 5.2e-95 352.4 495 44.6
COL.COLO4_32412 Corchorus olitorius HOM05D006075 ORTHO05D007527 8.3e-93 345.1 504 45.4
Duzib052G1148 Durio zibethinus HOM05D006075 ORTHO05D007527 4.6e-91 339.3 482 46.3
PSO478G1113 Papaver somniferum HOM05D006075 ORTHO05D007527 7.8e-91 338.6 361 54.6
Nitab4.5_0016932g0010 Nicotiana tabacum HOM05D006075 ORTHO05D007527 1.0e-90 338.2 492 45.3
unitig_744.g24646 Utricularia gibba HOM05D006075 ORTHO05D007527 2.8e-88 330.1 500 43.2
Nitab4.5_0002853g0070 Nicotiana tabacum HOM05D006075 ORTHO05D007527 6.2e-88 328.9 536 42.4
Haze_08940 Corylus avellana HOM05D006075 ORTHO05D007527 1.9e-84 317.4 281 64.1
ATR0322G053 Amborella trichopoda HOM05D006075 ORTHO05D007527 3.2e-84 316.6 371 51.2
Glyma.05G049100 Glycine max HOM05D006075 ORTHO05D007527 7.8e-83 312.0 386 49.7
CARHR013020 Cardamine hirsuta HOM05D006075 ORTHO05D007527 7.3e-81 305.4 405 46.7
Pp3c9_23740 Physcomitrium patens HOM05D006075 ORTHO05D007527 2.3e-79 300.4 512 38.9
Sc01g0008740 Simmondsia chinensis HOM05D006075 ORTHO05D007527 1.3e-77 294.7 399 45.6
Sed0016840 Sechium edule HOM05D006075 ORTHO05D007527 8.3e-77 292.0 272 59.2
Mapoly0001s0316 Marchantia polymorpha HOM05D006075 ORTHO05D007527 7.8e-75 285.4 519 37.2
Ah.12g057560 Amaranthus hybridus HOM05D006075 ORTHO05D007527 1.4e-68 264.6 477 40.5
CARHR048400 Cardamine hirsuta HOM05D006075 ORTHO05D007527 1.3e-61 241.5 291 50.5
SMO270G0127 Selaginella moellendorffii HOM05D006075 ORTHO05D007527 1.7e-61 241.1 480 36.9
Hund14727 Selenicereus undatus HOM05D006075 ORTHO05D007527 1.7e-58 231.1 489 38.0
Os01g0870201 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 3.6e-56 223.4 450 34.9
Zm00001eb251050 Zea mays HOM05D006075 ORTHO05D007527 6.4e-53 212.6 342 40.4
Cpa.g.sc74.79 Carica papaya HOM05D006075 ORTHO05D007527 8.4e-53 212.2 287 45.3
Dinv39003 Davidia involucrata HOM05D006075 ORTHO05D007527 1.5e-49 201.4 291 44.3
AagrBONN_evm.TU.Sc2ySwM_117.1004 Anthoceros agrestis HOM05D006075 ORTHO05D007527 7.9e-43 179.1 403 34.5
CBR_g17923 Chara braunii HOM05D006075 ORTHO05D007527 5.1e-42 176.4 160 53.1
Ca_20251_v3 Cicer arietinum L. HOM05D006075 ORTHO05D007527 5.7e-41 172.9 156 57.7
TAR636G1294 Trochodendron aralioides HOM05D006075 ORTHO05D007527 6.9e-31 139.4 168 48.2
AUR62017286 Chenopodium quinoa HOM05D006075 ORTHO05D007527 3.4e-30 137.1 187 47.1
C09p15950 Brassica napus HOM05D006075 ORTHO05D007527 3.9e-26 123.6 92 67.4
TAR636G2798 Trochodendron aralioides HOM05D006075 ORTHO05D007527 5.1e-26 123.2 71 84.5
AUR62010644 Chenopodium quinoa HOM05D006075 ORTHO05D007527 4.3e-25 120.2 163 45.4
CSS0009197 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 8.2e-24 115.9 443 28.4
BolC9t54506H Brassica oleracea HOM05D006075 ORTHO05D007527 3.2e-20 104.0 109 55.0
MCO15G123 Micromonas commoda HOM05D006075 ORTHO05D007527 3.2e-20 104.0 469 25.6
PRCOL_00005762 Prasinoderma coloniale HOM05D006075 ORTHO05D007527 3.0e-18 97.4 161 34.8
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.8e-15 88.2 111 48.6
Actinidia27405 Actinidia chinensis HOM05D006075 ORTHO05D007527 1.1e-12 79.0 63 61.9
ATR0322G060 Amborella trichopoda HOM05D006075 ORTHO05D007527 8.0e-11 72.8 85 45.9
Pp3c15_22645 Physcomitrium patens HOM05D006075 ORTHO05D007527 1.0e-10 72.4 116 42.2
Cre03.g150400 Chlamydomonas reinhardtii HOM05D006075 ORTHO05D007527 3.0e-10 70.9 162 29.6
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 2.4e-07 61.2 54 51.9


User provided reference genes

Program Settings