Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 0.0e+00 1095.5 535 100.0
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 3.1e-301 1037.7 529 96.0
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 9.9e-292 1006.1 535 90.7
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 3.0e-288 994.6 535 88.2
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 8.7e-288 993.0 535 89.7
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 1.1e-287 992.6 535 89.5
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 8.1e-286 986.5 534 88.4
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 5.3e-285 983.8 535 87.7
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 6.9e-285 983.4 535 88.0
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 2.0e-284 981.9 537 88.6
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 5.8e-284 980.3 535 86.9
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 7.6e-284 979.9 535 87.1
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 1.7e-283 978.8 537 88.6
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 2.9e-283 978.0 535 88.8
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 3.2e-282 974.5 535 87.3
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 2.1e-281 971.8 535 87.5
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 3.5e-281 971.1 535 86.5
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 7.9e-281 969.9 535 86.2
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 3.0e-280 968.0 535 86.5
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 1.1e-279 966.1 535 86.7
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 1.9e-279 965.3 535 86.0
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 2.5e-279 964.9 535 86.9
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 4.3e-279 964.1 535 86.4
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 2.8e-278 961.4 535 86.2
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 8.1e-278 959.9 535 86.2
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 1.4e-277 959.1 529 87.3
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 1.8e-277 958.7 535 85.4
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 1.8e-277 958.7 540 85.0
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 1.2e-276 956.1 535 85.4
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 1.2e-276 956.1 535 85.2
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.2e-276 956.1 535 85.6
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 3.4e-276 954.5 535 86.4
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 3.4e-276 954.5 535 86.4
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 3.4e-276 954.5 535 85.0
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 4.5e-276 954.1 535 85.0
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 5.8e-276 953.7 535 85.2
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 5.8e-276 953.7 535 85.0
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 7.6e-276 953.4 535 85.4
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 1.3e-275 952.6 536 85.8
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 1.7e-275 952.2 535 85.6
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 1.7e-275 952.2 535 85.6
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 2.2e-275 951.8 535 84.9
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 2.2e-275 951.8 536 85.8
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 6.4e-275 950.3 542 84.3
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 8.4e-275 949.9 535 84.9
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 8.4e-275 949.9 535 85.2
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.4e-274 949.1 535 84.5
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 3.2e-274 948.0 535 84.5
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 5.5e-274 947.2 535 85.2
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 2.1e-273 945.3 535 84.9
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 4.6e-273 944.1 534 85.4
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 1.3e-272 942.6 529 84.3
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 2.3e-272 941.8 535 83.6
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 3.0e-272 941.4 535 84.1
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 5.1e-272 940.6 535 83.7
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 6.7e-272 940.3 535 84.1
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 2.5e-271 938.3 537 82.9
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 9.6e-271 936.4 535 83.6
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 9.6e-271 936.4 535 84.3
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 1.3e-270 936.0 537 82.5
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 4.8e-270 934.1 537 82.5
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 4.8e-270 934.1 535 82.4
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 1.4e-269 932.6 536 84.1
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 3.1e-269 931.4 535 84.1
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 5.3e-269 930.6 536 82.8
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 1.2e-268 929.5 536 85.1
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 2.0e-268 928.7 527 83.1
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 3.4e-268 927.9 537 81.8
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 7.6e-268 926.8 535 82.6
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 2.2e-267 925.2 535 81.9
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 1.1e-266 922.9 529 82.4
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 1.4e-266 922.5 536 82.1
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 1.9e-266 922.2 534 82.4
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 4.2e-266 921.0 536 82.3
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 1.6e-265 919.1 528 82.6
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 4.6e-265 917.5 535 82.1
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 8.7e-264 913.3 535 81.5
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 1.5e-263 912.5 535 81.5
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 3.3e-263 911.4 535 80.9
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 4.3e-263 911.0 537 81.9
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 1.6e-262 909.1 535 81.3
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 4.8e-262 907.5 536 81.5
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 8.2e-262 906.7 535 80.9
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 8.2e-262 906.7 558 79.0
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 1.4e-261 906.0 535 80.9
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 2.4e-261 905.2 535 80.4
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 2.4e-261 905.2 535 80.7
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 2.4e-261 905.2 558 78.7
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 5.3e-261 904.0 533 81.1
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 5.3e-261 904.0 536 80.2
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 6.9e-261 903.7 535 79.8
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 3.4e-260 901.4 533 80.5
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 7.6e-260 900.2 535 81.1
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 1.0e-259 899.8 535 80.9
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 2.2e-259 898.7 536 81.2
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 2.9e-259 898.3 535 79.6
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 6.5e-259 897.1 530 80.9
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 8.5e-259 896.7 535 80.2
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 7.2e-258 893.6 536 80.2
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 4.6e-257 891.0 536 79.3
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 1.0e-256 889.8 496 87.3
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 2.3e-256 888.6 536 79.5
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 3.3e-255 884.8 536 79.1
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 3.3e-255 884.8 535 81.5
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 1.3e-254 882.9 528 78.6
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 3.7e-254 881.3 682 66.7
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 2.4e-253 878.6 530 79.4
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 5.9e-252 874.0 528 77.7
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 2.9e-251 871.7 493 85.8
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 5.5e-250 867.5 529 78.8
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 1.5e-247 859.4 494 84.0
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 2.6e-244 848.6 666 66.4
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 3.1e-237 825.1 539 73.8
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 2.8e-230 802.0 562 69.0
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 9.1e-229 797.0 527 70.6
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 5.2e-224 781.2 525 69.9
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 9.1e-221 770.4 536 73.1
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 2.7e-220 768.8 530 68.3
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 1.7e-219 766.1 526 68.6
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 4.4e-215 751.5 535 65.4
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 1.6e-209 733.0 442 82.4
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 6.1e-209 731.1 527 64.9
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 3.2e-205 718.8 405 83.5
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 1.5e-202 709.9 527 63.8
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 9.5e-194 680.6 497 66.2
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 1.2e-193 680.2 525 62.1
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 5.2e-192 674.9 363 87.3
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 1.6e-185 653.3 495 68.3
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 6.9e-176 621.3 422 73.2
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 3.4e-175 619.0 710 52.8
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 9.3e-149 531.2 299 84.9
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 1.5e-138 497.3 536 51.1
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 4.4e-130 469.2 312 74.0
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 3.5e-119 433.0 537 46.6
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 8.8e-107 391.7 262 74.0
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 6.5e-102 375.6 411 49.4
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 2.4e-88 330.5 184 85.9
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 4.1e-72 276.6 148 89.9
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 5.4e-64 249.6 148 77.7
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 5.8e-42 176.4 132 64.4
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 8.4e-41 172.6 104 78.8
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 1.3e-38 165.2 95 82.1
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 3.9e-38 163.7 216 42.1
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 2.1e-36 157.9 110 70.0
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 5.3e-35 153.3 94 79.8
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 1.5e-21 108.6 97 58.8
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 6.3e-20 103.2 92 57.6
Cc06_g21260 Coffea canephora HOM05D004282 ORTHO05D017169 5.0e-17 93.6 46 93.5
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 6.7e-14 83.2 53 75.5
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 8.8e-14 82.8 45 86.7
VMungo0464G0647 Vigna mungo HOM05D004282 ORTHO05D021217 8.8e-14 82.8 44 90.9
VMungo0540G0566 Vigna mungo HOM05D004282 ORTHO05D021217 8.8e-14 82.8 44 90.9
RcHm_v2.0_Chr1g0321151 Rosa chinensis HOM05D004282 ORTHO05D022242 1.2e-10 72.4 47 74.5
RcHm_v2.0_Chr7g0219111 Rosa chinensis HOM05D004282 ORTHO05D022242 4.5e-10 70.5 87 51.7
A09p35740 Brassica napus HOM05D004282 ORTHO05D017169 3.8e-09 67.4 40 80.0
A09p59280 Brassica napus HOM05D004282 ORTHO05D017169 3.8e-09 67.4 40 80.0
BraA09t41310Z Brassica rapa HOM05D004282 ORTHO05D017169 3.8e-09 67.4 40 80.0
A03p47680 Brassica napus HOM05D004282 ORTHO05D017169 4.7e-07 60.5 37 78.4
BraA09t37854Z Brassica rapa HOM05D004282 ORTHO05D017169 4.7e-07 60.5 37 78.4
Ca_12957_v3 Cicer arietinum L. HOM05D004282 ORTHO05D149096 6.1e-07 60.1 47 57.4
SGA_v2.0_scaffold43G16453 Striga asiatica HOM05D004282 ORTHO05D404191 1.0e-06 59.3 41 68.3
PGR042G1447 Punica granatum HOM05D001661 ORTHO05D001575 2.3e-06 58.2 122 30.3
Ca_07210_v3 Cicer arietinum L. HOM05D004282 ORTHO05D147921 3.0e-06 57.8 65 43.1


User provided reference genes

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