Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 3.2e-84 315.1 164 100.0
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 2.8e-56 222.2 155 76.1
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 1.1e-55 220.3 161 73.3
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 1.6e-54 216.5 160 73.8
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 2.7e-54 215.7 161 70.8
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 4.2e-52 208.4 162 71.0
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 5.2e-50 201.4 161 69.6
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 6.8e-50 201.1 149 71.8
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 1.2e-49 200.3 149 71.8
Potri.001G103800 Populus trichocarpa HOM05D005411 ORTHO05D006463 3.4e-49 198.7 160 66.9
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 4.4e-49 198.4 139 74.8
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 1.3e-48 196.8 150 69.3
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 1.8e-47 193.0 141 72.3
CiPaw.12G092800 Carya illinoinensis HOM05D005411 ORTHO05D006463 2.0e-46 189.5 151 68.2
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 2.0e-46 189.5 203 54.7
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 7.8e-46 187.6 159 66.0
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 2.9e-45 185.7 118 79.7
PSO478G4730 Papaver somniferum HOM05D005411 ORTHO05D006463 5.0e-45 184.9 150 66.7
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 6.6e-45 184.5 130 72.3
Dinv38942 Davidia involucrata HOM05D005411 ORTHO05D006463 1.9e-44 183.0 161 65.8
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 1.9e-44 183.0 150 66.0
CsaV3_4G005950 Cucumis sativus L. HOM05D005411 ORTHO05D006463 2.5e-44 182.6 150 64.7
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 2.5e-44 182.6 151 66.9
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 2.5e-44 182.6 156 64.7
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 3.3e-44 182.2 149 68.5
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 5.6e-44 181.4 139 68.3
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 9.5e-44 180.6 138 71.0
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 2.1e-43 179.5 139 67.6
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 2.8e-43 179.1 156 66.7
Nitab4.5_0013184g0010 Nicotiana tabacum HOM05D005411 ORTHO05D006463 3.6e-43 178.7 113 79.6
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 4.7e-43 178.3 119 78.2
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 6.1e-43 177.9 129 72.9
Peaxi162Scf00119g00941 Petunia axillaris HOM05D005411 ORTHO05D006463 8.0e-43 177.6 140 67.1
Solyc08g081130.4 Solanum lycopersicum HOM05D005411 ORTHO05D006463 1.0e-42 177.2 119 75.6
Sopen08g029430 Solanum pennellii HOM05D005411 ORTHO05D006463 1.0e-42 177.2 119 75.6
PGSC0003DMG403012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 1.0e-42 177.2 119 75.6
Nitab4.5_0001615g0100 Nicotiana tabacum HOM05D005411 ORTHO05D006463 1.4e-42 176.8 113 77.0
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 1.4e-42 176.8 131 71.8
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 1.8e-42 176.4 161 64.0
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 5.2e-42 174.9 167 61.1
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 5.2e-42 174.9 139 66.2
CAN.G774.50 Capsicum annuum HOM05D005411 ORTHO05D006463 6.8e-42 174.5 119 73.9
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 6.8e-42 174.5 140 65.7
Lsat_1_v5_gn_6_6580 Lactuca sativa HOM05D005411 ORTHO05D006463 1.5e-41 173.3 166 59.0
Migut.A00759 Erythranthe guttata HOM05D005411 ORTHO05D006463 2.0e-41 172.9 130 69.2
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 3.4e-41 172.2 143 66.4
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 7.5e-41 171.0 150 64.7
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 4.9e-40 168.3 160 59.4
HanXRQChr13g0394241 Helianthus annuus HOM05D005411 ORTHO05D006463 6.4e-40 167.9 125 67.2
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 4.1e-39 165.2 134 67.2
THA.LOC104814574 Tarenaya hassleriana HOM05D005411 ORTHO05D006463 5.4e-39 164.9 137 64.2
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 7.0e-39 164.5 169 58.0
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 7.0e-39 164.5 169 58.0
AL7G30140 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 1.2e-38 163.7 147 61.9
TPR.G12871 Trifolium pratense HOM05D005411 ORTHO05D006463 1.2e-38 163.7 128 66.4
AT4G23330 Arabidopsis thaliana HOM05D005411 ORTHO05D006463 1.6e-38 163.3 147 61.2
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 1.6e-38 163.3 126 67.5
BcaC09g51012 Brassica carinata HOM05D005411 ORTHO05D006463 2.7e-38 162.5 147 61.2
A01p14570 Brassica napus HOM05D005411 ORTHO05D006463 2.7e-38 162.5 147 61.2
BolC1t01733H Brassica oleracea HOM05D005411 ORTHO05D006463 2.7e-38 162.5 147 61.2
BraA01t01399Z Brassica rapa HOM05D005411 ORTHO05D006463 2.7e-38 162.5 147 61.2
Carub.0007s1784 Capsella rubella HOM05D005411 ORTHO05D006463 2.7e-38 162.5 147 62.6
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 3.5e-38 162.2 110 74.5
Thhalv10026496m.g Eutrema salsugineum HOM05D005411 ORTHO05D006463 4.6e-38 161.8 118 70.3
Sabra01G0078400 Salix brachista HOM05D005411 ORTHO05D006463 4.6e-38 161.8 155 59.4
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 7.8e-38 161.0 179 53.6
CARHR230670 Cardamine hirsuta HOM05D005411 ORTHO05D006463 1.0e-37 160.6 147 60.5
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 1.0e-37 160.6 127 66.9
Ca_17530_v3 Cicer arietinum L. HOM05D005411 ORTHO05D006463 1.3e-37 160.2 106 75.5
Psat7g033000 Pisum sativum HOM05D005411 ORTHO05D006463 1.3e-37 160.2 108 73.1
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 1.3e-37 160.2 127 64.6
MSTRG.25610 Avicennia marina HOM05D005411 ORTHO05D006463 2.3e-37 159.5 143 61.5
BraA03t14482Z Brassica rapa HOM05D000022 ORTHO05D000071 3.0e-37 159.1 157 58.6
SalBow4G3209 Salvia bowleyana HOM05D005411 ORTHO05D006463 3.0e-37 159.1 120 68.3
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 5.0e-37 158.3 160 57.5
ATR0680G335 Amborella trichopoda HOM05D005411 ORTHO05D006463 6.6e-37 157.9 106 76.4
BcaNung01456 Brassica carinata HOM05D005411 ORTHO05D006463 1.1e-36 157.1 113 69.9
A03p54210 Brassica napus HOM05D005411 ORTHO05D006463 1.1e-36 157.1 112 71.4
C07p52580 Brassica napus HOM05D000022 ORTHO05D000071 1.1e-36 157.1 113 69.9
BolC7t45755H Brassica oleracea HOM05D005411 ORTHO05D006463 1.1e-36 157.1 113 69.9
BcaC03g18356 Brassica carinata HOM05D005411 ORTHO05D006463 1.5e-36 156.8 112 71.4
C02p64340 Brassica napus HOM05D005411 ORTHO05D006463 1.5e-36 156.8 112 71.4
BcaNung03266 Brassica carinata HOM05D005411 ORTHO05D006463 3.3e-36 155.6 130 63.8
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 4.3e-36 155.2 128 64.1
unitig_46.g18551 Utricularia gibba HOM05D005411 ORTHO05D006463 2.8e-35 152.5 136 60.3
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 6.2e-35 151.4 181 50.3
Lj8E221T1 Lonicera japonica HOM05D005411 ORTHO05D006463 1.1e-34 150.6 103 74.8
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 5.2e-34 148.3 126 65.1
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 6.8e-34 147.9 118 69.5
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 6.8e-34 147.9 118 69.5
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 2.0e-33 146.4 91 81.3
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 3.4e-33 145.6 112 66.1
SGA_v2.0_scaffold173G39183 Striga asiatica HOM05D005411 ORTHO05D006463 5.8e-33 144.8 111 68.5
Duzib205G1808 Durio zibethinus HOM05D005411 ORTHO05D006463 9.8e-33 144.1 149 55.7
Os07g0483400 Oryza sativa ssp. japonica HOM05D005411 ORTHO05D006463 1.3e-32 143.7 109 65.1
AUR62022799 Chenopodium quinoa HOM05D005411 ORTHO05D006463 4.9e-32 141.7 117 60.7
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 6.4e-32 141.4 107 69.2
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 8.3e-32 141.0 112 67.9
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 3.2e-31 139.0 112 67.0
Aa31LG9G10800 Aethionema arabicum HOM05D005411 ORTHO05D006463 3.5e-30 135.6 122 59.0
CDE11G0686 Ceratophyllum demersum HOM05D003133 ORTHO05D006463 3.0e-29 132.5 100 67.0
SEGI_09083 Sequoiadendron giganteum HOM05D005411 ORTHO05D006463 4.3e-28 128.6 104 63.5
AUR62012163 Chenopodium quinoa HOM05D005411 ORTHO05D006463 1.8e-26 123.2 156 48.7
EL10Ac2g04672 Beta vulgaris HOM05D005411 ORTHO05D006463 3.1e-26 122.5 91 64.8
BolC5t34770H Brassica oleracea HOM05D005411 ORTHO05D006463 3.4e-25 119.0 94 68.1
Zm00001eb104990 Zea mays HOM05D005411 ORTHO05D006463 1.3e-24 117.1 83 68.7
BcaNung00981 Brassica carinata HOM05D005411 ORTHO05D006463 4.9e-24 115.2 155 48.4
Potri.003G127900 Populus trichocarpa HOM05D005411 ORTHO05D006463 4.1e-23 112.1 156 46.2
Sc01g0009600 Simmondsia chinensis HOM05D005411 ORTHO05D006463 9.2e-23 110.9 100 59.0
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 1.6e-22 110.2 110 56.4
CDE09G0994 Ceratophyllum demersum HOM05D005411 ORTHO05D006463 2.1e-22 109.8 80 67.5
Pp3c11_2200 Physcomitrium patens HOM05D005411 ORTHO05D006463 3.5e-22 109.0 156 42.9
Atru.chr9.2185 Acer truncatum HOM05D005411 ORTHO05D006463 4.6e-22 108.6 100 57.0
BcaNung00977 Brassica carinata HOM05D005411 ORTHO05D006463 6.0e-22 108.2 68 76.5
Mapoly0008s0209 Marchantia polymorpha HOM05D005411 ORTHO05D006463 7.3e-20 101.3 99 48.5
AagrBONN_evm.TU.Sc2ySwM_369.479 Anthoceros agrestis HOM05D005411 ORTHO05D006463 2.1e-19 99.8 103 51.5
Duzib084G0828 Durio zibethinus HOM05D005411 ORTHO05D006463 1.4e-18 97.1 141 41.8
Sabra17G0003100 Salix brachista HOM05D005411 ORTHO05D006463 4.0e-18 95.5 97 56.7
Sabra17G0003800 Salix brachista HOM05D005411 ORTHO05D006463 4.0e-18 95.5 97 56.7
Sabra18G0123000 Salix brachista HOM05D005411 ORTHO05D006463 1.5e-17 93.6 97 55.7
Hma1.2p1_0377F.1_g139290 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 2.0e-17 93.2 64 79.7
CSS0044618 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 2.6e-17 92.8 72 70.8
Sabra14G0123800 Salix brachista HOM05D005411 ORTHO05D006463 5.8e-17 91.7 97 54.6
SHI07138 Sapria himalayana HOM05D005411 ORTHO05D006463 2.9e-16 89.4 67 68.7
Oeu047371.1 Olea europaea HOM05D005411 ORTHO05D006463 1.9e-15 86.7 70 62.9
Sabra17G0034500 Salix brachista HOM05D005411 ORTHO05D006463 1.0e-13 80.9 94 50.0
BcaC01g04135 Brassica carinata HOM05D005411 ORTHO05D006463 3.9e-13 79.0 56 67.9
COL.COLO4_34468 Corchorus olitorius HOM05D005411 ORTHO05D006463 3.9e-13 79.0 70 57.1
Sabra11G0012500 Salix brachista HOM05D005411 ORTHO05D006463 4.3e-12 75.5 84 53.6
BolC3t16740H Brassica oleracea HOM05D005411 ORTHO05D006463 7.3e-12 74.7 68 60.3
SMO329G0027 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 7.3e-12 74.7 67 53.7
SMO358G0504 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 7.3e-12 74.7 67 53.7
C03p44770 Brassica napus HOM05D005411 ORTHO05D006463 9.6e-12 74.3 68 60.3
Sabra05G0164800 Salix brachista HOM05D005411 ORTHO05D006463 1.2e-11 73.9 115 45.2
HPP92_001497 Vanilla planifolia HOM05D005411 ORTHO05D006463 1.2e-09 67.4 46 69.6
Eucgr.H02258 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.3e-08 63.9 76 52.6
BcaB05g22557 Brassica carinata HOM05D002513 ORTHO05D002720 1.7e-08 63.5 77 49.4
Hund13808 Selenicereus undatus HOM05D005411 ORTHO05D006463 1.2e-06 57.4 42 71.4
PGSC0003DMG402012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 6.0e-06 55.1 46 60.9
CSS0004409 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 7.8e-06 54.7 55 56.4
CSS0027281 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 7.8e-06 54.7 55 56.4


User provided reference genes

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