Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 2942.5 1474 100.0
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 2041.5 1480 72.0
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 2022.3 1479 72.3
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1988.4 1482 70.7
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 1944.1 1484 68.5
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 1930.2 1483 68.7
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1904.0 1485 67.1
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1861.7 1483 66.5
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1855.1 1484 65.2
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1854.7 1483 66.2
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 1850.9 1515 65.0
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 1840.1 1484 65.8
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1838.5 1482 66.1
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1832.0 1477 65.1
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1831.2 1476 65.9
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1822.0 1477 64.8
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 1815.8 1484 64.6
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1803.5 1520 64.2
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 1788.1 1483 63.9
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1765.7 1490 63.4
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1752.3 1499 62.8
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1745.3 1453 64.6
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1744.6 1586 59.7
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1706.8 1579 59.2
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1694.9 1517 60.1
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1683.3 1499 61.0
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1678.3 1423 63.1
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1642.9 1487 59.5
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1638.6 1490 59.7
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1629.4 1488 58.9
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1627.8 1492 59.2
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 1624.8 1486 58.6
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1622.1 1481 58.5
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 1620.1 1478 59.6
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 1618.2 1487 58.8
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 1614.7 1475 58.6
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 1609.7 1484 58.1
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 1608.6 1476 58.4
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 1600.5 1489 57.6
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 1597.0 1487 57.9
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1593.6 1479 58.0
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1592.8 1477 57.7
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1590.9 1491 57.2
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1588.2 1480 58.0
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1584.7 1488 57.6
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1582.8 1493 57.7
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 1579.7 1483 58.1
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1574.7 1310 63.8
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 0.0e+00 1570.1 1479 57.7
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1567.0 1486 57.7
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1565.4 1489 57.5
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1559.7 1483 57.0
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1559.7 1483 57.0
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 1559.3 1485 57.9
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1557.0 1506 57.0
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1557.0 1481 57.1
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 1553.9 1508 56.8
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1553.1 1529 56.3
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1550.8 1485 56.3
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 1548.1 1502 56.3
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 1545.0 1517 56.5
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1541.6 1481 56.9
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 0.0e+00 1527.7 1487 56.5
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 1519.6 1503 55.4
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1515.4 1493 55.3
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1513.8 1513 54.5
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 0.0e+00 1512.7 1543 54.4
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1510.4 1501 54.2
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1509.2 1534 54.3
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1504.6 1488 55.0
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1504.2 1478 55.3
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 1494.6 1493 55.0
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 1486.5 1504 54.2
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1479.5 1502 54.1
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1470.7 1513 53.9
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 1467.2 1481 53.7
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 0.0e+00 1460.3 1486 53.8
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1451.8 1483 54.1
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 0.0e+00 1444.1 1425 55.4
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1430.2 1443 54.7
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 0.0e+00 1427.9 1490 52.2
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 1426.8 1503 53.3
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1418.3 1486 53.0
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 0.0e+00 1404.4 1369 56.0
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 0.0e+00 1402.5 1497 53.5
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 0.0e+00 1387.1 1484 52.4
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1377.8 1330 58.0
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 0.0e+00 1362.4 1563 50.6
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1362.1 1463 52.8
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 0.0e+00 1304.7 1253 55.9
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 0.0e+00 1236.1 1512 47.0
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 0.0e+00 1203.7 1509 47.7
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1149.0 1089 57.4
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 0.0e+00 1119.4 993 60.6
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 0.0e+00 1095.5 1503 43.4
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1091.6 1120 54.0
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 7.8e-254 881.7 1576 36.1
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 2.6e-241 840.1 907 51.6
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 1.5e-180 638.3 453 73.3
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 1.4e-173 615.1 448 73.2
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 2.8e-171 607.4 1473 30.5
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 3.4e-169 600.5 1038 37.2
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 3.5e-145 520.8 690 45.2
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 1.9e-127 461.8 407 60.7
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 5.1e-80 304.3 592 34.0
FAN08G3186 Fragaria x ananassa HOM05D006693 ORTHO05D008092 1.5e-60 239.6 187 62.0
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 1.0e-51 210.3 179 64.2
Cpa.g.c42974 Carica papaya HOM05D006693 ORTHO05D008092 1.9e-26 126.3 84 70.2
Actinidia27361 Actinidia chinensis HOM05D006693 ORTHO05D008092 5.5e-26 124.8 101 63.4
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 3.6e-25 122.1 81 81.5
CAN.G532.47 Capsicum annuum HOM05D006693 ORTHO05D008092 2.0e-23 116.3 90 60.0
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 3.4e-23 115.5 87 67.8
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 3.4e-23 115.5 87 67.8
ClCG07G007840 Citrullus lanatus HOM05D006693 ORTHO05D008092 1.6e-20 106.7 59 78.0
Cpa.g.sc180.5 Carica papaya HOM05D006693 ORTHO05D008092 2.0e-20 106.3 57 78.9
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 1.0e-16 94.0 67 76.1
Sabra01G0074000 Salix brachista HOM05D000115 ORTHO05D000464 6.8e-08 64.7 83 50.6
Actinidia33727 Actinidia chinensis HOM05D006693 ORTHO05D008092 2.9e-06 59.3 74 50.0


User provided reference genes

Program Settings