Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G016400 Manihot esculenta HOM05D006267 ORTHO05D007490 5.2e-301 1036.9 527 100.0
Manes.01G056900 Manihot esculenta HOM05D006267 ORTHO05D007490 1.8e-213 746.1 525 75.0
Potri.001G098500 Populus trichocarpa HOM05D006267 ORTHO05D007490 1.4e-165 587.0 520 62.3
Potri.003G133100 Populus trichocarpa HOM05D006267 ORTHO05D007490 2.0e-156 556.6 530 60.0
Sabra03G0095400 Salix brachista HOM05D006267 ORTHO05D007490 1.3e-150 537.3 528 58.5
Thecc.03G287200 Theobroma cacao HOM05D006267 ORTHO05D007490 1.9e-146 523.5 538 56.3
Sabra01G0073800 Salix brachista HOM05D006267 ORTHO05D007490 9.5e-146 521.2 537 56.1
GSVIVG01019426001 Vitis vinifera HOM05D006267 ORTHO05D007490 4.4e-143 512.3 539 54.2
COL.COLO4_08352 Corchorus olitorius HOM05D006267 ORTHO05D007490 7.8e-140 501.5 537 54.7
Prupe.5G107200 Prunus persica HOM05D006267 ORTHO05D007490 1.2e-137 494.2 551 52.8
Duzib084G0031 Durio zibethinus HOM05D006267 ORTHO05D007490 1.5e-135 487.3 538 53.7
Atru.chr9.2105 Acer truncatum HOM05D006267 ORTHO05D007490 8.3e-134 481.5 527 53.9
Gorai.007G024600 Gossypium raimondii HOM05D006267 ORTHO05D007490 2.1e-132 476.9 539 53.6
Gohir.D11G022800 Gossypium hirsutum HOM05D006267 ORTHO05D007490 6.0e-132 475.3 539 53.4
QL02p033236 Quercus lobata HOM05D006267 ORTHO05D007490 1.0e-131 474.6 541 53.8
Gohir.A11G023100 Gossypium hirsutum HOM05D006267 ORTHO05D007490 2.3e-131 473.4 539 54.2
Dinv38895 Davidia involucrata HOM05D006267 ORTHO05D007490 6.2e-129 465.3 544 50.9
MD14G1113000 Malus domestica HOM05D006267 ORTHO05D007490 5.2e-128 462.2 547 50.8
Cfa012253 Carpinus fangiana HOM05D006267 ORTHO05D007490 5.8e-127 458.8 544 52.8
Ciclev10019222m.g Citrus clementina HOM05D006267 ORTHO05D007490 1.9e-125 453.8 530 50.6
MD06G1092500 Malus domestica HOM05D006267 ORTHO05D007490 2.1e-124 450.3 545 49.2
RcHm_v2.0_Chr7g0196491 Rosa chinensis HOM05D006267 ORTHO05D007490 3.0e-123 446.4 555 49.2
FvH4_5g03290 Fragaria vesca HOM05D006267 ORTHO05D007490 8.7e-123 444.9 555 49.4
FAN18G3550 Fragaria x ananassa HOM05D006267 ORTHO05D007490 5.6e-122 442.2 547 49.5
FAN04G2714 Fragaria x ananassa HOM05D006267 ORTHO05D007490 5.3e-120 435.6 555 49.5
FAN08G1104 Fragaria x ananassa HOM05D006267 ORTHO05D007490 1.3e-118 431.0 577 47.8
Dinv37589 Davidia involucrata HOM05D006267 ORTHO05D007490 2.2e-118 430.3 544 48.9
CANSAT21G1484 Cannabis sativa HOM05D006267 ORTHO05D007490 1.1e-117 427.9 542 49.3
Duzib205G1874 Durio zibethinus HOM05D006267 ORTHO05D007490 7.1e-117 425.2 538 49.1
FAN04G3088 Fragaria x ananassa HOM05D006267 ORTHO05D007490 1.6e-116 424.1 579 47.5
CSS0029775 Camellia sinensis var. sinensis HOM05D006267 ORTHO05D007490 1.7e-115 420.6 534 48.9
FAN13G1859 Fragaria x ananassa HOM05D006267 ORTHO05D007490 1.7e-115 420.6 579 47.2
FAN13G1356 Fragaria x ananassa HOM05D006267 ORTHO05D007490 2.1e-113 413.7 579 46.8
ClCG07G007820 Citrullus lanatus HOM05D006267 ORTHO05D007490 4.5e-111 406.0 549 45.5
Glyma.08G018700 Glycine max HOM05D006267 ORTHO05D007490 2.2e-110 403.7 543 47.5
Actinidia33723 Actinidia chinensis HOM05D006267 ORTHO05D007490 2.4e-109 400.2 535 48.4
VMungo0251G1048 Vigna mungo HOM05D006267 ORTHO05D007490 7.1e-109 398.7 546 45.1
Lj4g0011337 Lotus japonicus HOM05D006267 ORTHO05D007490 9.3e-109 398.3 553 46.3
Cpa.g.sc201.8 Carica papaya HOM05D006267 ORTHO05D007490 1.8e-107 394.0 514 47.1
Hma1.2p1_0216F.1_g091140 Hydrangea macrophylla HOM05D006267 ORTHO05D007490 1.5e-106 391.0 541 46.2
TPR.G12935 Trifolium pratense HOM05D006267 ORTHO05D007490 1.5e-106 391.0 547 44.8
arahy.Tifrunner.gnm1.ann1.BRCM5A Arachis hypogaea HOM05D006267 ORTHO05D007490 4.8e-105 386.0 548 44.0
CsaV3_4G006140 Cucumis sativus L. HOM05D006267 ORTHO05D007490 8.1e-105 385.2 550 44.9
arahy.Tifrunner.gnm1.ann1.SWZD22 Arachis hypogaea HOM05D006267 ORTHO05D007490 1.1e-104 384.8 548 44.0
Actinidia27358 Actinidia chinensis HOM05D006267 ORTHO05D007490 2.4e-104 383.6 540 46.9
Sed0011828 Sechium edule HOM05D006267 ORTHO05D007490 4.0e-104 382.9 551 44.5
Glyma.05G212200 Glycine max HOM05D006267 ORTHO05D007490 9.0e-104 381.7 541 44.9
Ca_10954_v3 Cicer arietinum L. HOM05D006267 ORTHO05D007490 1.2e-103 381.3 543 45.7
Phvul.002G293500 Phaseolus vulgaris HOM05D006267 ORTHO05D007490 1.2e-103 381.3 541 44.9
Medtr8g098995 Medicago truncatula HOM05D006267 ORTHO05D007490 3.4e-103 379.8 557 43.4
Psat7g029320 Pisum sativum HOM05D006267 ORTHO05D007490 4.5e-103 379.4 556 45.0
TAR629G1352 Trochodendron aralioides HOM05D006267 ORTHO05D007490 5.5e-101 372.5 537 45.4
Lj2A177G41 Lonicera japonica HOM05D006267 ORTHO05D007490 1.2e-100 371.3 532 47.0
Lalb_Chr05g0224451 Lupinus albus HOM05D006267 ORTHO05D007490 3.5e-100 369.8 535 44.3
CiPaw.12G088700 Carya illinoinensis HOM05D006267 ORTHO05D007490 5.1e-99 365.9 445 51.2
TAR375G0718 Trochodendron aralioides HOM05D006267 ORTHO05D007490 9.6e-98 361.7 627 40.5
AUR62010761 Chenopodium quinoa HOM05D006267 ORTHO05D007490 8.2e-97 358.6 547 42.2
Lalb_Chr09g0333071 Lupinus albus HOM05D006267 ORTHO05D007490 1.2e-95 354.8 546 42.7
Sed0002932 Sechium edule HOM05D006267 ORTHO05D007490 2.0e-95 354.0 520 43.7
Nn1g01698 Nelumbo nucifera HOM05D006267 ORTHO05D007490 2.6e-95 353.6 563 43.5
TWI60G1512 Tripterygium wilfordii HOM05D006267 ORTHO05D007490 1.4e-93 347.8 444 49.1
TWI15G0222 Tripterygium wilfordii HOM05D006267 ORTHO05D007490 2.7e-92 343.6 446 48.4
EL10Ac5g12844 Beta vulgaris HOM05D006267 ORTHO05D007490 6.1e-92 342.4 543 41.4
MELO3C016335.2 Cucumis melo HOM05D006267 ORTHO05D007490 2.3e-91 340.5 545 42.6
Duzib068G0865 Durio zibethinus HOM05D006267 ORTHO05D007490 3.9e-91 339.7 538 44.2
TAR374G1011 Trochodendron aralioides HOM05D006267 ORTHO05D007490 6.7e-91 339.0 631 39.3
TWI81G0535 Tripterygium wilfordii HOM05D006267 ORTHO05D007490 8.7e-91 338.6 423 47.3
Haze_08744 Corylus avellana HOM05D006267 ORTHO05D007490 1.5e-90 337.8 364 55.2
Sc01g0009910 Simmondsia chinensis HOM05D006267 ORTHO05D007490 3.8e-86 323.2 548 40.1
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 3.2e-85 320.1 549 40.4
AUR62019762 Chenopodium quinoa HOM05D006267 ORTHO05D007490 9.4e-85 318.5 496 40.9
Cc08_g15330 Coffea canephora HOM05D006267 ORTHO05D007490 3.6e-84 316.6 543 39.0
Eucgr.E00783 Eucalyptus grandis HOM05D006267 ORTHO05D007490 4.6e-84 316.2 441 44.4
Rhsim07G0086900 Rhododendron simsii HOM05D006267 ORTHO05D007490 9.7e-82 308.5 493 43.4
vmacro13979 Vaccinium macrocarpon HOM05D006267 ORTHO05D007490 1.8e-80 304.3 581 39.1
DCAR_005575 Daucus carota HOM05D006267 ORTHO05D007490 5.9e-79 299.3 527 39.8
VMungo1215G1298 Vigna mungo HOM05D006267 ORTHO05D007490 5.0e-78 296.2 542 38.9
PGR042G1146 Punica granatum HOM05D006267 ORTHO05D007490 2.5e-77 293.9 517 42.4
Hund11430 Selenicereus undatus HOM05D006267 ORTHO05D007490 3.6e-76 290.0 524 39.3
Phvul.002G160500 Phaseolus vulgaris HOM05D006267 ORTHO05D007490 6.7e-75 285.8 534 38.4
Nitab4.5_0002381g0070 Nicotiana tabacum HOM05D006267 ORTHO05D007490 2.0e-66 257.7 517 37.5
Aqoxy7G00177 Aquilegia oxysepala HOM05D006267 ORTHO05D007490 3.3e-66 256.9 568 36.6
THA.LOC104817764 Tarenaya hassleriana HOM05D006267 ORTHO05D007490 7.5e-66 255.8 517 35.8
Carub.0002s0075 Capsella rubella HOM05D006267 ORTHO05D007490 3.7e-65 253.4 405 42.2
CARHR046900 Cardamine hirsuta HOM05D006267 ORTHO05D007490 9.1e-64 248.8 406 42.6
MSTRG.13864 Avicennia marina HOM05D006267 ORTHO05D007490 3.8e-62 243.4 525 36.0
AL2G11010 Arabidopsis lyrata HOM05D006267 ORTHO05D007490 2.5e-61 240.7 415 40.5
Sp2g00660 Schrenkiella parvula HOM05D006267 ORTHO05D007490 7.2e-61 239.2 414 40.3
Nitab4.5_0003366g0020 Nicotiana tabacum HOM05D006267 ORTHO05D007490 2.1e-60 237.7 514 35.8
ECA246G3109 Erigeron canadensis HOM05D006267 ORTHO05D007490 3.6e-60 236.9 539 36.5
MSTRG.1836 Avicennia marina HOM05D006267 ORTHO05D007490 3.0e-59 233.8 523 35.6
Aa31LG2G1120 Aethionema arabicum HOM05D006267 ORTHO05D007490 4.0e-59 233.4 407 41.3
AT1G64050 Arabidopsis thaliana HOM05D006267 ORTHO05D007490 4.8e-57 226.5 413 39.7
Thhalv10023327m.g Eutrema salsugineum HOM05D006267 ORTHO05D007490 4.8e-57 226.5 415 40.0
Peaxi162Scf00117g01519 Petunia axillaris HOM05D006267 ORTHO05D007490 8.3e-57 225.7 520 34.4
BolC9t54717H Brassica oleracea HOM05D006267 ORTHO05D007490 1.8e-56 224.6 426 38.5
Migut.E01211 Erythranthe guttata HOM05D006267 ORTHO05D007490 2.4e-56 224.2 487 38.6
BcaC04g22526 Brassica carinata HOM05D006267 ORTHO05D007490 4.1e-56 223.4 426 38.5
BraA09t37153Z Brassica rapa HOM05D006267 ORTHO05D007490 5.4e-56 223.0 427 38.6
A09p15090 Brassica napus HOM05D006267 ORTHO05D007490 9.1e-56 222.2 427 38.6
Lsat_1_v5_gn_3_11600 Lactuca sativa HOM05D006267 ORTHO05D007490 1.6e-55 221.5 525 37.3
C09p18210 Brassica napus HOM05D006267 ORTHO05D007490 2.7e-55 220.7 426 38.3
HanXRQChr17g0533871 Helianthus annuus HOM05D006267 ORTHO05D007490 2.7e-55 220.7 547 35.5
PSO063G3925 Papaver somniferum HOM05D006267 ORTHO05D007490 1.3e-54 218.4 620 32.9
BcaB07g31428 Brassica carinata HOM05D006267 ORTHO05D007490 1.7e-54 218.0 428 37.6
PSO170G4156 Papaver somniferum HOM05D006267 ORTHO05D007490 5.0e-54 216.5 624 32.4
MBI04_g06288_MAGBIO Magnolia biondii HOM05D006267 ORTHO05D007490 1.9e-53 214.5 315 43.8
SGA_v2.0_scaffold111G31467 Striga asiatica HOM05D006267 ORTHO05D007490 1.6e-52 211.5 512 36.9
Sopen12g028680 Solanum pennellii HOM05D006267 ORTHO05D007490 4.4e-50 203.4 532 34.8
Solyc12g056170.2 Solanum lycopersicum HOM05D006267 ORTHO05D007490 2.8e-49 200.7 532 34.6
PGSC0003DMG400004984 Solanum tuberosum HOM05D006267 ORTHO05D007490 2.8e-49 200.7 594 33.5
SHI07081 Sapria himalayana HOM05D006267 ORTHO05D007490 1.8e-48 198.0 478 34.3
CiPaw.11G129100 Carya illinoinensis HOM05D006267 ORTHO05D007490 7.5e-34 149.4 241 41.9
Zm00001eb237760 Zea mays HOM05D006267 ORTHO05D007490 7.5e-34 149.4 557 30.0
HPP92_003940 Vanilla planifolia HOM05D006267 ORTHO05D007490 4.9e-33 146.7 559 27.4
ATR0188G022 Amborella trichopoda HOM05D006267 ORTHO05D007490 3.3e-29 134.0 561 27.1
unitig_52.g17233 Utricularia gibba HOM05D006267 ORTHO05D007490 6.8e-27 126.3 346 32.4
HanXRQChr06g0166231 Helianthus annuus HOM05D006267 ORTHO05D007490 9.2e-16 89.4 133 41.4
CDE03G0464 Ceratophyllum demersum HOM05D000575 ORTHO05D004448 1.5e-13 82.0 412 28.2
CiPaw.11G129200 Carya illinoinensis HOM05D006267 ORTHO05D007490 2.4e-11 74.7 73 53.4
Zm00001eb203960 Zea mays HOM05D006267 ORTHO05D007490 2.4e-11 74.7 313 26.5
HPP92_023960 Vanilla planifolia HOM05D006267 ORTHO05D007490 1.9e-08 65.1 199 31.2
SEGI_39127 Sequoiadendron giganteum HOM05D006267 ORTHO05D007490 2.7e-07 61.2 294 25.9
HPP92_023938 Vanilla planifolia HOM05D006267 ORTHO05D007490 1.7e-06 58.5 191 29.8


User provided reference genes

Program Settings