Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 9.5e-62 240.0 118 100.0
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 2.7e-56 221.9 118 88.1
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 7.8e-56 220.3 118 88.1
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 7.8e-56 220.3 118 88.1
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 1.0e-55 219.9 118 88.1
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 1.0e-55 219.9 118 87.3
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 5.0e-55 217.6 118 86.4
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 6.6e-55 217.2 118 85.6
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 8.6e-55 216.9 118 86.4
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 1.1e-54 216.5 118 86.4
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 1.1e-54 216.5 113 90.3
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 1.5e-54 216.1 118 84.7
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 1.9e-54 215.7 115 87.8
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.5e-54 215.3 118 86.4
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 4.3e-54 214.5 116 88.8
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 7.3e-54 213.8 116 87.1
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 9.5e-54 213.4 118 83.1
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 9.5e-54 213.4 118 84.7
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 1.2e-53 213.0 116 87.1
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 1.6e-53 212.6 118 83.1
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 1.6e-53 212.6 116 83.6
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 2.1e-53 212.2 113 88.5
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 2.8e-53 211.8 116 84.5
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 3.6e-53 211.5 113 88.5
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 3.6e-53 211.5 119 88.2
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 3.6e-53 211.5 119 88.2
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 6.2e-53 210.7 116 86.2
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 8.0e-53 210.3 119 87.4
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 1.0e-52 209.9 120 84.2
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 1.4e-52 209.5 116 87.1
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 5.2e-52 207.6 117 83.8
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 5.2e-52 207.6 117 86.3
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 5.2e-52 207.6 118 81.4
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 8.9e-52 206.8 116 85.3
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 1.5e-51 206.1 116 84.5
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 1.5e-51 206.1 115 85.2
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 2.0e-51 205.7 118 80.5
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 2.6e-51 205.3 119 84.9
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 2.6e-51 205.3 117 84.6
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 4.4e-51 204.5 118 85.6
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 4.4e-51 204.5 118 85.6
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 4.4e-51 204.5 115 84.3
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 4.4e-51 204.5 127 78.0
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 5.8e-51 204.1 118 82.2
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 5.8e-51 204.1 119 80.7
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 5.8e-51 204.1 116 81.9
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 5.8e-51 204.1 115 80.9
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 7.5e-51 203.8 116 82.8
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 9.8e-51 203.4 114 82.5
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 1.3e-50 203.0 116 79.3
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.7e-50 202.6 118 79.7
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 1.7e-50 202.6 117 81.2
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.7e-50 202.6 116 82.8
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.7e-50 202.6 116 82.8
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 1.7e-50 202.6 116 82.8
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 1.7e-50 202.6 115 80.9
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 1.7e-50 202.6 116 83.6
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 2.2e-50 202.2 118 78.8
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 2.2e-50 202.2 114 83.3
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 2.2e-50 202.2 114 83.3
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 2.2e-50 202.2 114 83.3
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 2.2e-50 202.2 118 80.5
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 2.9e-50 201.8 117 80.3
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 2.9e-50 201.8 117 80.3
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 3.7e-50 201.4 117 80.3
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 3.7e-50 201.4 117 80.3
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 3.7e-50 201.4 117 80.3
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 3.7e-50 201.4 116 79.3
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 4.9e-50 201.1 116 80.2
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 4.9e-50 201.1 114 81.6
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 6.4e-50 200.7 117 79.5
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 6.4e-50 200.7 117 79.5
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 6.4e-50 200.7 114 81.6
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 8.3e-50 200.3 117 79.5
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 8.3e-50 200.3 117 79.5
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 1.4e-49 199.5 117 79.5
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 1.9e-49 199.1 117 79.5
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 1.9e-49 199.1 114 80.7
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 2.4e-49 198.7 117 78.6
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 2.4e-49 198.7 117 78.6
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 2.4e-49 198.7 114 80.7
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 3.2e-49 198.4 117 78.6
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 4.1e-49 198.0 116 79.3
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 7.0e-49 197.2 114 81.6
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 9.2e-49 196.8 116 79.3
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 9.2e-49 196.8 130 73.8
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 1.2e-48 196.4 116 80.2
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 1.6e-48 196.1 116 75.9
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 2.0e-48 195.7 117 76.9
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 2.0e-48 195.7 118 76.3
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 2.7e-48 195.3 114 81.6
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 2.7e-48 195.3 115 78.3
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 6.0e-48 194.1 119 79.0
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 6.0e-48 194.1 119 79.0
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 6.0e-48 194.1 119 79.0
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 6.0e-48 194.1 119 79.0
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 6.0e-48 194.1 119 79.0
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 7.8e-48 193.7 114 81.6
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 7.8e-48 193.7 123 75.6
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 1.3e-47 193.0 117 76.9
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 1.7e-47 192.6 119 78.2
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 3.0e-47 191.8 119 78.2
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 3.9e-47 191.4 117 76.9
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 5.0e-47 191.0 118 73.7
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 5.0e-47 191.0 118 73.7
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 8.6e-47 190.3 119 78.2
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 1.9e-46 189.1 118 79.7
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 7.3e-46 187.2 114 77.2
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 9.5e-46 186.8 118 75.4
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 1.6e-45 186.0 119 77.3
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 4.0e-44 181.4 116 74.1
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 5.2e-44 181.0 133 67.7
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 6.8e-44 180.6 116 71.6
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 2.0e-43 179.1 119 71.4
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 2.6e-43 178.7 115 74.8
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 2.6e-43 178.7 116 77.6
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 7.5e-43 177.2 114 74.6
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 7.5e-43 177.2 166 57.2
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.7e-42 176.0 100 82.0
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.7e-42 176.0 100 82.0
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.9e-41 172.6 103 77.7
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 2.4e-41 172.2 97 82.5
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 1.2e-40 169.9 118 75.4
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.2e-40 169.9 98 82.7
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 2.3e-39 165.6 101 77.2
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 3.9e-39 164.9 96 81.2
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 1.2e-37 159.8 100 75.0
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 4.7e-37 157.9 120 67.5
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 6.2e-37 157.5 99 76.8
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 4.4e-35 151.4 100 74.0
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 9.9e-35 150.2 110 61.8
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 1.7e-34 149.4 113 61.1
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 2.4e-33 145.6 101 70.3
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 2.4e-33 145.6 112 59.8
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 2.4e-33 145.6 97 73.2
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 2.5e-30 135.6 114 55.3
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 1.4e-25 119.8 64 84.4
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 9.3e-25 117.1 66 86.4
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 1.6e-24 116.3 63 85.7
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 2.1e-24 115.9 118 53.4
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 3.5e-24 115.2 71 81.7
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 1.0e-23 113.6 64 82.8
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.3e-23 112.5 64 76.6
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 3.0e-23 112.1 64 84.4
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 3.3e-22 108.6 160 43.8
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 1.3e-21 106.7 68 75.0
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 1.3e-21 106.7 59 84.7
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 2.1e-21 105.9 61 78.7
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 3.6e-21 105.1 60 80.0
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 6.2e-21 104.4 54 90.7
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 3.1e-20 102.1 57 80.7
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 1.5e-19 99.8 53 88.7
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 2.2e-18 95.9 53 81.1
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 3.8e-18 95.1 119 47.1
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 6.4e-18 94.4 53 81.1
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 3.5e-16 88.6 130 40.0
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 1.0e-15 87.0 136 37.5
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 5.8e-11 71.2 70 51.4
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 9.9e-11 70.5 52 71.2
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 2.1e-08 62.8 35 82.9
MD08G1129600 Malus domestica HOM05D001461 ORTHO05D005534 3.0e-07 58.9 98 41.8
Atru.chr9.2072 Acer truncatum HOM05D001461 ORTHO05D005534 5.6e-06 54.7 114 35.1


User provided reference genes

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