Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G012400 Manihot esculenta HOM05D007041 ORTHO05D008036 7.9e-76 287.0 138 100.0
Manes.02G012350 Manihot esculenta HOM05D007041 ORTHO05D008036 2.2e-70 268.9 138 94.2
QL02p031389 Quercus lobata HOM05D007041 ORTHO05D008036 1.2e-18 97.1 105 43.8
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 4.9e-17 91.7 115 43.5
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 2.4e-16 89.4 115 44.3
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 2.4e-16 89.4 115 42.6
Potri.001G094000 Populus trichocarpa HOM05D007041 ORTHO05D008036 1.3e-14 83.6 118 43.2
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 3.0e-14 82.4 122 36.9
TAR636G2915 Trochodendron aralioides HOM05D007041 ORTHO05D008036 4.7e-12 75.1 120 38.3
vmacro22515 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 4.7e-12 75.1 125 36.8
CiPaw.01G073300 Carya illinoinensis HOM05D007041 ORTHO05D008036 8.1e-12 74.3 61 62.3
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 8.1e-12 74.3 128 36.7
Prupe.5G115500 Prunus persica HOM05D007041 ORTHO05D008036 1.4e-11 73.6 112 38.4
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 4.0e-11 72.0 140 32.9
Rhsim01G0170500 Rhododendron simsii HOM05D007041 ORTHO05D008036 5.2e-11 71.6 129 36.4
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 8.9e-11 70.9 123 35.8
CiPaw.02G039100 Carya illinoinensis HOM05D007041 ORTHO05D008036 1.5e-10 70.1 61 54.1
vmacro22516 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 1.5e-10 70.1 130 35.4
Potri.003G137600 Populus trichocarpa HOM05D007041 ORTHO05D008036 2.6e-10 69.3 102 39.2
FAN06G2039 Fragaria x ananassa HOM05D007041 ORTHO05D008036 3.4e-10 68.9 135 33.3
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 3.4e-10 68.9 136 34.6
Sabra01G0069900 Salix brachista HOM05D007041 ORTHO05D008036 5.8e-10 68.2 100 41.0
FAN03G1744 Fragaria x ananassa HOM05D007041 ORTHO05D008036 7.5e-10 67.8 139 30.9
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 9.8e-10 67.4 39 66.7
FvH4_7g16050 Fragaria vesca HOM05D007041 ORTHO05D008036 1.3e-09 67.0 65 50.8
FAN06G3979 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.3e-09 67.0 65 50.8
FAN10G1361 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.3e-09 67.0 65 50.8
Lj3g0003817 Lotus japonicus HOM05D007041 ORTHO05D008036 1.3e-09 67.0 119 37.0
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 2.9e-09 65.9 65 50.8
Rhsim01G0170200 Rhododendron simsii HOM05D007041 ORTHO05D008036 3.7e-09 65.5 129 33.3
Nitab4.5_0007594g0010 Nicotiana tabacum HOM05D007041 ORTHO05D008036 4.9e-09 65.1 127 30.7
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 6.4e-09 64.7 55 52.7
Glyma.07G057800 Glycine max HOM05D007041 ORTHO05D008036 6.4e-09 64.7 57 56.1
Gorai.001G156400 Gossypium raimondii HOM05D007041 ORTHO05D008036 6.4e-09 64.7 96 41.7
Lsat_1_v5_gn_7_2180 Lactuca sativa HOM05D007041 ORTHO05D008036 6.4e-09 64.7 61 45.9
Gorai.008G252800 Gossypium raimondii HOM05D007041 ORTHO05D008036 1.4e-08 63.5 92 40.2
Manes.05G025400 Manihot esculenta HOM05D007041 ORTHO05D008036 1.4e-08 63.5 119 36.1
Gohir.D07G144400 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.9e-08 63.2 96 40.6
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.9e-08 63.2 92 37.0
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 1.9e-08 63.2 92 37.0
Nn1g01816 Nelumbo nucifera HOM05D007041 ORTHO05D008036 1.9e-08 63.2 101 39.6
PGSC0003DMG400012302 Solanum tuberosum HOM05D007041 ORTHO05D008036 1.9e-08 63.2 118 30.5
EL10Ac1g00306 Beta vulgaris HOM05D007041 ORTHO05D008036 2.4e-08 62.8 56 51.8
Haze_08658 Corylus avellana HOM05D007041 ORTHO05D008036 2.4e-08 62.8 74 43.2
Thecc.01G346300 Theobroma cacao HOM05D007041 ORTHO05D008036 2.4e-08 62.8 124 32.3
Glyma.16G026800 Glycine max HOM05D007041 ORTHO05D008036 3.2e-08 62.4 58 55.2
Glyma.19G254100 Glycine max HOM05D007041 ORTHO05D008036 3.2e-08 62.4 109 38.5
Gohir.D12G236050 Gossypium hirsutum HOM05D007041 ORTHO05D008036 3.2e-08 62.4 81 42.0
Gohir.A12G234950 Gossypium hirsutum HOM05D007041 ORTHO05D008036 5.4e-08 61.6 92 39.1
Nn3g19073 Nelumbo nucifera HOM05D007041 ORTHO05D008036 5.4e-08 61.6 71 50.7
Nitab4.5_0000305g0050 Nicotiana tabacum HOM05D007041 ORTHO05D008036 5.4e-08 61.6 120 30.0
Lalb_Chr17g0342361 Lupinus albus HOM05D007041 ORTHO05D008036 7.1e-08 61.2 103 34.0
Actinidia28494 Actinidia chinensis HOM05D000017 ORTHO05D008036 9.2e-08 60.8 52 55.8
AUR62023489 Chenopodium quinoa HOM05D007041 ORTHO05D008036 9.2e-08 60.8 37 70.3
Phvul.010G111500 Phaseolus vulgaris HOM05D007041 ORTHO05D008036 1.2e-07 60.5 42 61.9
TPR.G7661 Trifolium pratense HOM05D007041 ORTHO05D008036 1.2e-07 60.5 121 33.1
Thhalv10006386m.g Eutrema salsugineum HOM05D007041 ORTHO05D008036 1.6e-07 60.1 36 66.7
Atru.chr5.628 Acer truncatum HOM05D007041 ORTHO05D008036 2.1e-07 59.7 121 31.4
CANSAT56G1227 Cannabis sativa HOM05D007041 ORTHO05D008036 2.1e-07 59.7 39 66.7
Cpa.g.sc2382.1 Carica papaya HOM05D007041 ORTHO05D008036 2.1e-07 59.7 53 54.7
Gohir.A07G139300 Gossypium hirsutum HOM05D007041 ORTHO05D008036 2.1e-07 59.7 96 36.5
Sc01g0010130 Simmondsia chinensis HOM05D007041 ORTHO05D008036 2.1e-07 59.7 39 61.5
Thecc.03G293400 Theobroma cacao HOM05D007041 ORTHO05D008036 2.1e-07 59.7 92 35.9
VMungo0331G1585 Vigna mungo HOM05D007041 ORTHO05D008036 2.1e-07 59.7 41 63.4
Carub.0005s2835 Capsella rubella HOM05D007041 ORTHO05D008036 2.7e-07 59.3 51 51.0
Peaxi162Scf00843g00001 Petunia axillaris HOM05D007041 ORTHO05D008036 2.7e-07 59.3 125 26.4
CARHR171970 Cardamine hirsuta HOM05D007041 ORTHO05D008036 3.5e-07 58.9 51 49.0
Potri.002G168300 Populus trichocarpa HOM05D007041 ORTHO05D008036 3.5e-07 58.9 54 48.1
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 3.5e-07 58.9 54 51.9
AT3G61660 Arabidopsis thaliana HOM05D007041 ORTHO05D008036 4.6e-07 58.5 51 51.0
CsaV3_3G008250 Cucumis sativus L. HOM05D007041 ORTHO05D008036 6.0e-07 58.2 118 32.2
arahy.Tifrunner.gnm1.ann1.JU2T19 Arachis hypogaea HOM05D007041 ORTHO05D008036 7.8e-07 57.8 36 66.7
arahy.Tifrunner.gnm1.ann1.LKBY4F Arachis hypogaea HOM05D007041 ORTHO05D008036 7.8e-07 57.8 36 66.7
RcHm_v2.0_Chr7g0195411 Rosa chinensis HOM05D017100 ORTHO05D008036 7.8e-07 57.8 44 56.8
FAN13G1599 Fragaria x ananassa HOM05D017100 ORTHO05D008036 1.0e-06 57.4 106 34.0
FAN18G2618 Fragaria x ananassa HOM05D017100 ORTHO05D008036 1.0e-06 57.4 106 34.0
Oeu009948.1 Olea europaea HOM05D007041 ORTHO05D008036 1.0e-06 57.4 39 61.5
ECA236G3839 Erigeron canadensis HOM05D007041 ORTHO05D008036 1.7e-06 56.6 62 46.8
FAN08G3467 Fragaria x ananassa HOM05D017100 ORTHO05D008036 1.7e-06 56.6 79 34.2
MELO3C006045.2 Cucumis melo HOM05D007041 ORTHO05D008036 2.3e-06 56.2 118 28.8
AL5G44060 Arabidopsis lyrata HOM05D007041 ORTHO05D008036 3.0e-06 55.8 34 64.7
Sp5g01745 Schrenkiella parvula HOM05D007041 ORTHO05D008036 3.0e-06 55.8 34 64.7
C08p36510 Brassica napus HOM05D007041 ORTHO05D008036 3.9e-06 55.5 34 67.6
BolC8t51234H Brassica oleracea HOM05D007041 ORTHO05D008036 3.9e-06 55.5 34 67.6
Sopen08g030330 Solanum pennellii HOM05D002045 ORTHO05D002014 3.9e-06 55.5 50 46.0
HPP92_007621 Vanilla planifolia HOM05D007041 ORTHO05D008036 3.9e-06 55.5 49 55.1
A09p53730 Brassica napus HOM05D007041 ORTHO05D008036 5.1e-06 55.1 49 51.0
BraA09t40795Z Brassica rapa HOM05D007041 ORTHO05D008036 5.1e-06 55.1 49 51.0
FvH4_5g04090 Fragaria vesca HOM05D017100 ORTHO05D008036 5.1e-06 55.1 29 72.4
FAN18G0435 Fragaria x ananassa HOM05D017100 ORTHO05D008036 5.1e-06 55.1 29 72.4
SalBow3G2736 Salvia bowleyana HOM05D007041 ORTHO05D008036 5.1e-06 55.1 103 28.2
FAN04G1004 Fragaria x ananassa HOM05D017100 ORTHO05D008036 6.6e-06 54.7 79 34.2
FAN04G2843 Fragaria x ananassa HOM05D017100 ORTHO05D008036 6.6e-06 54.7 79 34.2
Potri.014G095600 Populus trichocarpa HOM05D007041 ORTHO05D008036 6.6e-06 54.7 56 50.0
Oeu007854.1 Olea europaea HOM05D007041 ORTHO05D008036 8.6e-06 54.3 111 28.8
Oeu007855.1 Olea europaea HOM05D007041 ORTHO05D008036 8.6e-06 54.3 109 28.4


User provided reference genes

Program Settings