Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G012350 Manihot esculenta HOM05D007041 ORTHO05D008036 2.3e-75 285.4 138 100.0
Manes.02G012400 Manihot esculenta HOM05D007041 ORTHO05D008036 6.5e-70 267.3 138 94.2
QL02p031389 Quercus lobata HOM05D007041 ORTHO05D008036 2.6e-18 95.9 105 43.8
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.9e-16 89.7 115 45.2
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 5.4e-16 88.2 115 42.6
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 4.6e-15 85.1 115 43.5
Potri.001G094000 Populus trichocarpa HOM05D007041 ORTHO05D008036 3.0e-14 82.4 118 43.2
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 3.0e-14 82.4 118 39.0
TAR636G2915 Trochodendron aralioides HOM05D007041 ORTHO05D008036 1.8e-11 73.2 120 38.3
vmacro22515 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 2.3e-11 72.8 125 36.8
CiPaw.01G073300 Carya illinoinensis HOM05D007041 ORTHO05D008036 3.1e-11 72.4 61 62.3
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 5.2e-11 71.6 128 37.5
Prupe.5G115500 Prunus persica HOM05D007041 ORTHO05D008036 8.9e-11 70.9 109 38.5
Rhsim01G0170500 Rhododendron simsii HOM05D007041 ORTHO05D008036 1.5e-10 70.1 125 36.8
CiPaw.02G039100 Carya illinoinensis HOM05D007041 ORTHO05D008036 2.6e-10 69.3 61 54.1
Lj3g0003817 Lotus japonicus HOM05D007041 ORTHO05D008036 4.4e-10 68.6 120 36.7
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 5.8e-10 68.2 140 32.9
Potri.003G137600 Populus trichocarpa HOM05D007041 ORTHO05D008036 5.8e-10 68.2 102 39.2
FvH4_7g16050 Fragaria vesca HOM05D007041 ORTHO05D008036 7.5e-10 67.8 130 36.2
FAN03G1744 Fragaria x ananassa HOM05D007041 ORTHO05D008036 7.5e-10 67.8 130 34.6
FAN10G1361 Fragaria x ananassa HOM05D007041 ORTHO05D008036 7.5e-10 67.8 130 36.2
Nitab4.5_0007594g0010 Nicotiana tabacum HOM05D007041 ORTHO05D008036 7.5e-10 67.8 122 32.0
Sabra01G0069900 Salix brachista HOM05D007041 ORTHO05D008036 9.8e-10 67.4 100 41.0
PGSC0003DMG400012302 Solanum tuberosum HOM05D007041 ORTHO05D008036 9.8e-10 67.4 118 32.2
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.7e-09 66.6 130 36.2
vmacro22516 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 1.7e-09 66.6 126 36.5
Lsat_1_v5_gn_7_2180 Lactuca sativa HOM05D007041 ORTHO05D008036 2.2e-09 66.2 61 47.5
Glyma.07G057800 Glycine max HOM05D007041 ORTHO05D008036 2.9e-09 65.9 57 57.9
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 2.9e-09 65.9 39 66.7
Nn1g01816 Nelumbo nucifera HOM05D007041 ORTHO05D008036 2.9e-09 65.9 136 34.6
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 2.9e-09 65.9 123 35.0
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.1e-08 63.9 55 52.7
FAN06G2039 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.1e-08 63.9 130 35.4
Glyma.16G026800 Glycine max HOM05D007041 ORTHO05D008036 1.1e-08 63.9 58 56.9
Nitab4.5_0000305g0050 Nicotiana tabacum HOM05D007041 ORTHO05D008036 1.1e-08 63.9 120 32.5
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 1.1e-08 63.9 136 33.8
Lalb_Chr17g0342361 Lupinus albus HOM05D007041 ORTHO05D008036 1.4e-08 63.5 114 32.5
Gorai.008G252800 Gossypium raimondii HOM05D007041 ORTHO05D008036 1.9e-08 63.2 92 41.3
Gorai.001G156400 Gossypium raimondii HOM05D007041 ORTHO05D008036 2.4e-08 62.8 96 41.7
Rhsim01G0170200 Rhododendron simsii HOM05D007041 ORTHO05D008036 2.4e-08 62.8 132 34.1
Gohir.D12G236050 Gossypium hirsutum HOM05D007041 ORTHO05D008036 4.1e-08 62.0 81 43.2
Sopen08g030330 Solanum pennellii HOM05D002045 ORTHO05D002014 4.1e-08 62.0 50 50.0
Thecc.03G293400 Theobroma cacao HOM05D007041 ORTHO05D008036 4.1e-08 62.0 92 38.0
HPP92_007621 Vanilla planifolia HOM05D007041 ORTHO05D008036 4.1e-08 62.0 53 58.5
FAN06G3979 Fragaria x ananassa HOM05D007041 ORTHO05D008036 5.4e-08 61.6 65 47.7
Manes.05G025400 Manihot esculenta HOM05D007041 ORTHO05D008036 5.4e-08 61.6 119 36.1
Haze_08658 Corylus avellana HOM05D007041 ORTHO05D008036 7.1e-08 61.2 74 43.2
Gohir.A12G234950 Gossypium hirsutum HOM05D007041 ORTHO05D008036 7.1e-08 61.2 92 40.2
Gohir.D07G144400 Gossypium hirsutum HOM05D007041 ORTHO05D008036 7.1e-08 61.2 96 40.6
EL10Ac1g00306 Beta vulgaris HOM05D007041 ORTHO05D008036 9.2e-08 60.8 56 51.8
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 9.2e-08 60.8 92 37.0
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 9.2e-08 60.8 92 37.0
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 9.2e-08 60.8 149 32.9
Peaxi162Scf00843g00001 Petunia axillaris HOM05D007041 ORTHO05D008036 1.2e-07 60.5 125 27.2
Nn3g19073 Nelumbo nucifera HOM05D007041 ORTHO05D008036 1.6e-07 60.1 71 50.7
arahy.Tifrunner.gnm1.ann1.JU2T19 Arachis hypogaea HOM05D007041 ORTHO05D008036 2.1e-07 59.7 42 64.3
arahy.Tifrunner.gnm1.ann1.LKBY4F Arachis hypogaea HOM05D007041 ORTHO05D008036 2.1e-07 59.7 42 64.3
Potri.002G168300 Populus trichocarpa HOM05D007041 ORTHO05D008036 2.1e-07 59.7 54 51.9
Actinidia28494 Actinidia chinensis HOM05D000017 ORTHO05D008036 2.7e-07 59.3 49 57.1
Thhalv10006386m.g Eutrema salsugineum HOM05D007041 ORTHO05D008036 2.7e-07 59.3 36 66.7
Sc01g0010130 Simmondsia chinensis HOM05D007041 ORTHO05D008036 2.7e-07 59.3 39 61.5
VMungo0331G1585 Vigna mungo HOM05D007041 ORTHO05D008036 2.7e-07 59.3 94 38.3
Thecc.01G346300 Theobroma cacao HOM05D007041 ORTHO05D008036 3.5e-07 58.9 124 32.3
Phvul.010G111500 Phaseolus vulgaris HOM05D007041 ORTHO05D008036 4.6e-07 58.5 42 61.9
Sp5g01745 Schrenkiella parvula HOM05D007041 ORTHO05D008036 4.6e-07 58.5 41 61.0
Carub.0005s2835 Capsella rubella HOM05D007041 ORTHO05D008036 6.0e-07 58.2 51 51.0
Cpa.g.sc2382.1 Carica papaya HOM05D007041 ORTHO05D008036 6.0e-07 58.2 53 54.7
AUR62023489 Chenopodium quinoa HOM05D007041 ORTHO05D008036 6.0e-07 58.2 106 41.5
A09p53730 Brassica napus HOM05D007041 ORTHO05D008036 7.8e-07 57.8 53 52.8
C08p36510 Brassica napus HOM05D007041 ORTHO05D008036 7.8e-07 57.8 38 68.4
BolC8t51234H Brassica oleracea HOM05D007041 ORTHO05D008036 7.8e-07 57.8 38 68.4
BraA09t40795Z Brassica rapa HOM05D007041 ORTHO05D008036 7.8e-07 57.8 53 52.8
CARHR171970 Cardamine hirsuta HOM05D007041 ORTHO05D008036 7.8e-07 57.8 51 49.0
Gohir.A07G139300 Gossypium hirsutum HOM05D007041 ORTHO05D008036 7.8e-07 57.8 96 36.5
Zm00001eb310140 Zea mays HOM05D007041 ORTHO05D008036 7.8e-07 57.8 47 51.1
Zm00001eb441140 Zea mays HOM05D007041 ORTHO05D008036 7.8e-07 57.8 47 51.1
AL5G44060 Arabidopsis lyrata HOM05D007041 ORTHO05D008036 1.0e-06 57.4 30 73.3
AT3G61660 Arabidopsis thaliana HOM05D007041 ORTHO05D008036 1.0e-06 57.4 51 51.0
TPR.G7661 Trifolium pratense HOM05D007041 ORTHO05D008036 1.3e-06 57.0 127 29.1
Glyma.19G254100 Glycine max HOM05D007041 ORTHO05D008036 3.0e-06 55.8 109 36.7
Potri.014G095600 Populus trichocarpa HOM05D007041 ORTHO05D008036 3.0e-06 55.8 56 53.6
Atru.chr5.628 Acer truncatum HOM05D007041 ORTHO05D008036 3.9e-06 55.5 121 30.6
CsaV3_3G008250 Cucumis sativus L. HOM05D007041 ORTHO05D008036 3.9e-06 55.5 118 31.4
Oeu007854.1 Olea europaea HOM05D007041 ORTHO05D008036 3.9e-06 55.5 111 29.7
Oeu009948.1 Olea europaea HOM05D007041 ORTHO05D008036 3.9e-06 55.5 39 59.0
CANSAT56G1227 Cannabis sativa HOM05D007041 ORTHO05D008036 5.1e-06 55.1 39 64.1
ECA236G3839 Erigeron canadensis HOM05D007041 ORTHO05D008036 5.1e-06 55.1 62 46.8
Nn2g15118 Nelumbo nucifera HOM05D007041 ORTHO05D008036 5.1e-06 55.1 103 38.8
Oeu007855.1 Olea europaea HOM05D007041 ORTHO05D008036 5.1e-06 55.1 109 30.3
RcHm_v2.0_Chr7g0195411 Rosa chinensis HOM05D017100 ORTHO05D008036 5.1e-06 55.1 44 54.5
Sabra14G0070100 Salix brachista HOM05D007041 ORTHO05D008036 5.1e-06 55.1 56 53.6
HPP92_005512 Vanilla planifolia HOM05D007041 ORTHO05D008036 5.1e-06 55.1 63 44.4
Sed0010994 Sechium edule HOM05D007041 ORTHO05D008036 6.6e-06 54.7 29 72.4
Os01g0656300 Oryza sativa ssp. japonica HOM05D007041 ORTHO05D008036 8.6e-06 54.3 44 56.8


User provided reference genes

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