Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G011100 Manihot esculenta HOM05D007275 ORTHO05D009279 1.1e-47 193.0 97 100.0
Potri.001G092700 Populus trichocarpa HOM05D007275 ORTHO05D009279 2.1e-38 162.2 95 85.3
AUR62010827 Chenopodium quinoa HOM05D007275 ORTHO05D009279 4.6e-38 161.0 95 84.2
Haze_08628 Corylus avellana HOM05D007275 ORTHO05D009279 7.8e-38 160.2 97 82.5
Thecc.03G296000 Theobroma cacao HOM05D007275 ORTHO05D009279 1.0e-37 159.8 97 84.5
Dinv38844 Davidia involucrata HOM05D007275 ORTHO05D009279 1.3e-37 159.5 97 83.5
GSVIVG01019513001 Vitis vinifera HOM05D007275 ORTHO05D009279 1.3e-37 159.5 97 84.5
Sabra01G0069000 Salix brachista HOM05D007275 ORTHO05D009279 2.3e-37 158.7 92 84.8
Cfa012796 Carpinus fangiana HOM05D007275 ORTHO05D009279 3.0e-37 158.3 97 81.4
Hma1.2p1_0359F.1_g135280 Hydrangea macrophylla HOM05D007275 ORTHO05D009279 3.9e-37 157.9 94 84.0
Nn1g01839 Nelumbo nucifera HOM05D007275 ORTHO05D009279 3.9e-37 157.9 94 84.0
QL02p030913 Quercus lobata HOM05D007275 ORTHO05D009279 5.1e-37 157.5 93 83.9
Actinidia22145 Actinidia chinensis HOM05D007275 ORTHO05D009279 1.5e-36 156.0 94 84.0
Sabra03G0100000 Salix brachista HOM05D007275 ORTHO05D009279 2.5e-36 155.2 90 82.2
COL.COLO4_10681 Corchorus olitorius HOM05D007275 ORTHO05D009279 3.3e-36 154.8 92 82.6
Gohir.D11G024100 Gossypium hirsutum HOM05D007275 ORTHO05D009279 3.3e-36 154.8 95 81.1
Gorai.007G025800 Gossypium raimondii HOM05D007275 ORTHO05D009279 3.3e-36 154.8 95 81.1
Potri.003G138800 Populus trichocarpa HOM05D007275 ORTHO05D009279 3.3e-36 154.8 91 81.3
Atru.chr9.2015 Acer truncatum HOM05D007275 ORTHO05D009279 4.3e-36 154.5 97 80.4
Gohir.A11G024400 Gossypium hirsutum HOM05D007275 ORTHO05D009279 5.6e-36 154.1 95 81.1
Gohir.D12G236900 Gossypium hirsutum HOM05D007275 ORTHO05D009279 5.6e-36 154.1 97 81.4
Gorai.008G253500 Gossypium raimondii HOM05D007275 ORTHO05D009279 5.6e-36 154.1 97 81.4
TAR375G1117 Trochodendron aralioides HOM05D007275 ORTHO05D009279 5.6e-36 154.1 94 80.9
Ciclev10024283m.g Citrus clementina HOM05D007275 ORTHO05D009279 9.6e-36 153.3 92 82.6
Gohir.A12G235700 Gossypium hirsutum HOM05D007275 ORTHO05D009279 1.3e-35 152.9 97 80.4
Nn3g19047 Nelumbo nucifera HOM05D007275 ORTHO05D009279 1.3e-35 152.9 94 79.8
DCAR_005035 Daucus carota HOM05D007275 ORTHO05D009279 2.1e-35 152.1 97 76.3
EL10Ac5g12903 Beta vulgaris HOM05D007275 ORTHO05D009279 4.8e-35 151.0 95 77.9
Hma1.2p1_0229F.1_g097175 Hydrangea macrophylla HOM05D007275 ORTHO05D009279 4.8e-35 151.0 97 76.3
Hma1.2p1_0229F.1_g097200 Hydrangea macrophylla HOM05D007275 ORTHO05D009279 4.8e-35 151.0 97 76.3
Peaxi162Scf00074g01033 Petunia axillaris HOM05D007275 ORTHO05D009279 4.8e-35 151.0 97 77.3
Phvul.002G297500 Phaseolus vulgaris HOM05D007275 ORTHO05D009279 1.1e-34 149.8 97 80.4
arahy.Tifrunner.gnm1.ann1.IALD8X Arachis hypogaea HOM05D007275 ORTHO05D009279 1.8e-34 149.1 92 79.3
MD14G1123400 Malus domestica HOM05D007275 ORTHO05D009279 1.8e-34 149.1 92 82.6
Eucgr.D01727 Eucalyptus grandis HOM05D007275 ORTHO05D009279 3.1e-34 148.3 94 79.8
Cc08_g15930 Coffea canephora HOM05D007275 ORTHO05D009279 4.0e-34 147.9 94 79.8
PGSC0003DMG400012158 Solanum tuberosum HOM05D007275 ORTHO05D009279 4.0e-34 147.9 95 75.8
Peaxi162Scf00117g01123 Petunia axillaris HOM05D007275 ORTHO05D009279 5.3e-34 147.5 95 77.9
arahy.Tifrunner.gnm1.ann1.GQP3LI Arachis hypogaea HOM05D007275 ORTHO05D009279 6.9e-34 147.1 92 78.3
Sc01g0010220 Simmondsia chinensis HOM05D007275 ORTHO05D009279 6.9e-34 147.1 95 77.9
Dinv37542 Davidia involucrata HOM05D007275 ORTHO05D009279 9.0e-34 146.7 84 88.1
MD06G1104700 Malus domestica HOM05D007275 ORTHO05D009279 9.0e-34 146.7 92 80.4
Nitab4.5_0010144g0020 Nicotiana tabacum HOM05D007275 ORTHO05D009279 9.0e-34 146.7 95 76.8
Prupe.5G117300 Prunus persica HOM05D007275 ORTHO05D009279 1.2e-33 146.4 92 81.5
TAR629G0721 Trochodendron aralioides HOM05D007275 ORTHO05D010861 1.5e-33 146.0 98 76.5
PGR031G2423 Punica granatum HOM05D007275 ORTHO05D009279 2.0e-33 145.6 97 76.3
CSS0010422 Camellia sinensis var. sinensis HOM05D007275 ORTHO05D009279 2.6e-33 145.2 95 76.8
CAN.G532.107 Capsicum annuum HOM05D007275 ORTHO05D009279 2.6e-33 145.2 90 80.0
CiPaw.12G084200 Carya illinoinensis HOM05D007275 ORTHO05D009279 5.8e-33 144.1 94 77.7
Nitab4.5_0000726g0090 Nicotiana tabacum HOM05D007275 ORTHO05D009279 7.6e-33 143.7 90 77.8
Glyma.08G022200 Glycine max HOM05D007275 ORTHO05D009279 9.9e-33 143.3 93 78.5
Solyc08g082160.3 Solanum lycopersicum HOM05D007275 ORTHO05D009279 9.9e-33 143.3 95 74.7
Sopen08g030440 Solanum pennellii HOM05D007275 ORTHO05D009279 9.9e-33 143.3 95 74.7
Lj4g0015273 Lotus japonicus HOM05D007275 ORTHO05D009279 1.3e-32 142.9 93 78.5
Glyma.05G216300 Glycine max HOM05D007275 ORTHO05D009279 1.7e-32 142.5 93 78.5
TPR.G3422 Trifolium pratense HOM05D007275 ORTHO05D009279 2.2e-32 142.1 97 73.2
SalBow1G0766 Salvia bowleyana HOM05D007275 ORTHO05D009279 4.9e-32 141.0 92 77.2
MBI06_g46619_MAGBIO Magnolia biondii HOM05D007275 ORTHO05D009279 8.4e-32 140.2 88 77.3
MBI06_g46730_MAGBIO Magnolia biondii HOM05D007275 ORTHO05D000022 8.4e-32 140.2 88 77.3
Oeu038573.1 Olea europaea HOM05D007275 ORTHO05D009279 8.4e-32 140.2 90 77.8
Nitab4.5_0000223g0330 Nicotiana tabacum HOM05D007275 ORTHO05D009279 1.1e-31 139.8 90 76.7
SalBow1G5261 Salvia bowleyana HOM05D007275 ORTHO05D009279 1.1e-31 139.8 92 76.1
CSS0024458 Camellia sinensis var. sinensis HOM05D007275 ORTHO05D009279 1.9e-31 139.0 94 75.5
Lalb_Chr16g0390621 Lupinus albus HOM05D007275 ORTHO05D009279 2.4e-31 138.7 94 73.4
TWI60G1254 Tripterygium wilfordii HOM05D007275 ORTHO05D009279 3.2e-31 138.3 93 74.2
Migut.A00668 Erythranthe guttata HOM05D007275 ORTHO05D009279 1.6e-30 136.0 97 69.1
HanXRQChr06g0166541 Helianthus annuus HOM05D007275 ORTHO05D009279 1.6e-30 136.0 95 69.5
RcHm_v2.0_Chr7g0195121 Rosa chinensis HOM05D007275 ORTHO05D009279 3.5e-30 134.8 92 75.0
CANSAT21G2355 Cannabis sativa HOM05D007275 ORTHO05D009279 6.0e-30 134.0 96 71.9
MELO3C032816.2 Cucumis melo HOM05D007275 ORTHO05D009279 3.3e-28 128.3 93 69.9
AUR62019826 Chenopodium quinoa HOM05D007275 ORTHO05D009279 5.6e-28 127.5 74 82.4
ECA246G4125 Erigeron canadensis HOM05D007275 ORTHO05D009279 5.6e-28 127.5 95 67.4
ClCG07G014960 Citrullus lanatus HOM05D007275 ORTHO05D009279 7.4e-28 127.1 87 70.1
FvH4_5g04420 Fragaria vesca HOM05D007275 ORTHO05D009279 7.4e-28 127.1 93 69.9
FAN18G1142 Fragaria x ananassa HOM05D007275 ORTHO05D009279 7.4e-28 127.1 93 69.9
FAN18G2266 Fragaria x ananassa HOM05D007275 ORTHO05D009279 7.4e-28 127.1 93 69.9
FAN08G0060 Fragaria x ananassa HOM05D007275 ORTHO05D009279 9.6e-28 126.7 92 69.6
Aqoxy7G00131 Aquilegia oxysepala HOM05D007275 ORTHO05D009279 1.3e-27 126.3 97 64.9
HanXRQChr17g0535191 Helianthus annuus HOM05D007275 ORTHO05D009279 1.6e-27 125.9 93 65.6
Medtr8g099385 Medicago truncatula HOM05D007275 ORTHO05D009279 1.6e-27 125.9 94 69.1
Lsat_1_v5_gn_3_10301 Lactuca sativa HOM05D007275 ORTHO05D009279 4.8e-27 124.4 91 68.1
Ah.12g052450 Amaranthus hybridus HOM05D006525 ORTHO05D007845 1.1e-26 123.2 69 84.1
CsaV3_4G006490 Cucumis sativus L. HOM05D007275 ORTHO05D009279 1.4e-26 122.9 90 70.0
FvH4_3g01740 Fragaria vesca HOM05D007275 ORTHO05D009279 1.4e-26 122.9 93 67.7
Zm00001eb338790 Zea mays HOM05D007275 ORTHO05D009279 1.4e-26 122.9 96 66.7
ATR0320G041 Amborella trichopoda HOM05D007275 ORTHO05D009279 4.5e-25 117.9 90 65.6
Hma1.2p1_2596F.1_g325120 Hydrangea macrophylla HOM05D007275 ORTHO05D009279 4.5e-25 117.9 69 85.5
Psat7g026480 Pisum sativum HOM05D007275 ORTHO05D009279 9.9e-25 116.7 95 65.3
Sed0004885 Sechium edule HOM05D007275 ORTHO05D009279 1.3e-24 116.3 88 67.0
Nitab4.5_0007661g0010 Nicotiana tabacum HOM05D007275 ORTHO05D009279 2.9e-24 115.2 77 71.4
BcaNung01088 Brassica carinata HOM05D007275 ORTHO05D009279 4.9e-24 114.4 95 61.1
BcaNung01089 Brassica carinata HOM05D007275 ORTHO05D009279 4.9e-24 114.4 93 60.2
Duzib068G1121 Durio zibethinus HOM05D007275 ORTHO05D009279 6.4e-24 114.0 71 83.1
BcaC09g50944 Brassica carinata HOM05D007275 ORTHO05D009279 8.4e-24 113.6 92 58.7
A01p15130 Brassica napus HOM05D007275 ORTHO05D009279 8.4e-24 113.6 92 58.7
C01p19030 Brassica napus HOM05D007275 ORTHO05D009279 8.4e-24 113.6 92 58.7
BolC1t01829H Brassica oleracea HOM05D007275 ORTHO05D009279 8.4e-24 113.6 92 58.7
FAN13G1788 Fragaria x ananassa HOM05D007275 ORTHO05D009279 1.1e-23 113.2 121 53.7
CDE10G0124 Ceratophyllum demersum HOM05D007275 ORTHO05D009279 1.9e-23 112.5 82 67.1
CDE10G0242 Ceratophyllum demersum HOM05D000974 ORTHO05D002201 4.2e-23 111.3 82 68.3
unitig_748.g8124 Utricularia gibba HOM05D007275 ORTHO05D009279 5.5e-23 110.9 87 67.8
Oeu063532.1 Olea europaea HOM05D007275 ORTHO05D009279 9.3e-23 110.2 80 71.2
CSS0026606 Camellia sinensis var. sinensis HOM05D007275 ORTHO05D009279 1.8e-21 105.9 69 75.4
SEGI_25349 Sequoiadendron giganteum HOM05D007275 ORTHO05D009279 4.8e-19 97.8 93 51.6
Rhsim02G0242000 Rhododendron simsii HOM05D007275 ORTHO05D009279 3.1e-18 95.1 67 74.6
FAN04G0348 Fragaria x ananassa HOM05D007275 ORTHO05D009279 2.7e-14 82.0 93 50.5
Thhalv10027148m.g Eutrema salsugineum HOM05D007275 ORTHO05D009279 6.0e-14 80.9 67 59.7
Lalb_Chr16g0390631 Lupinus albus HOM05D007275 ORTHO05D009279 1.1e-12 76.6 50 72.0
Aqoxy2G01184 Aquilegia oxysepala HOM05D000015 ORTHO05D009146 2.9e-08 62.0 102 41.2
Aqoxy1G02962 Aquilegia oxysepala HOM05D000015 ORTHO05D009146 6.5e-08 60.8 103 39.8
Manes.14G157400 Manihot esculenta HOM05D000015 ORTHO05D003525 2.5e-07 58.9 106 34.0
Manes.06G020400 Manihot esculenta HOM05D000015 ORTHO05D003525 4.2e-07 58.2 106 33.0
CiPaw.08G033100 Carya illinoinensis HOM05D000015 ORTHO05D003525 9.3e-07 57.0 73 41.1
HanXRQChr15g0470561 Helianthus annuus HOM05D000015 ORTHO05D009146 2.1e-06 55.8 75 44.0
TWI34G1472 Tripterygium wilfordii HOM05D000015 ORTHO05D003525 2.1e-06 55.8 59 47.5
Atru.chr7.770 Acer truncatum HOM05D000015 ORTHO05D003525 2.7e-06 55.5 73 38.4
Atru.chr7.789 Acer truncatum HOM05D000015 ORTHO05D003525 2.7e-06 55.5 73 38.4
CDE06G1972 Ceratophyllum demersum HOM05D000015 ORTHO05D003525 3.6e-06 55.1 73 38.4
Dinv13936 Davidia involucrata HOM05D000015 ORTHO05D009146 3.6e-06 55.1 57 52.6
Dinv25433 Davidia involucrata HOM05D000015 ORTHO05D003525 6.1e-06 54.3 59 44.1
ECA236G1637 Erigeron canadensis HOM05D000015 ORTHO05D009146 6.1e-06 54.3 91 37.4
Manes.17G027600 Manihot esculenta HOM05D000015 ORTHO05D009146 6.1e-06 54.3 79 41.8
QL03p004924 Quercus lobata HOM05D000015 ORTHO05D009146 6.1e-06 54.3 57 52.6
QL05p071991 Quercus lobata HOM05D000015 ORTHO05D009146 6.1e-06 54.3 57 52.6
GSVIVG01010871001 Vitis vinifera HOM05D000015 ORTHO05D003525 6.1e-06 54.3 59 45.8
CDE02G0421 Ceratophyllum demersum HOM05D000015 ORTHO05D003525 7.9e-06 53.9 72 37.5
Medtr4g132620 Medicago truncatula HOM05D000015 ORTHO05D009146 7.9e-06 53.9 68 47.1


User provided reference genes

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